data_6PO
# 
_chem_comp.id                                    6PO 
_chem_comp.name                                  "9-(2-deoxy-5-O-phosphono-beta-D-erythro-pentofuranosyl)-6-propoxy-9H-purin-2-amine" 
_chem_comp.type                                  "DNA LINKING" 
_chem_comp.pdbx_type                             ATOMN 
_chem_comp.formula                               "C13 H20 N5 O7 P" 
_chem_comp.mon_nstd_parent_comp_id               DG 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2012-04-27 
_chem_comp.pdbx_modified_date                    2012-06-15 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        389.301 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     6PO 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   Y 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        4ENK 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
6PO OP2    O2P   O 0 1 N N N 21.493 -28.094 7.182 7.093  0.437  0.021  OP2    6PO 1  
6PO P      P     P 0 1 N N N 22.631 -29.172 7.299 5.792  1.328  0.343  P      6PO 2  
6PO OP1    O1P   O 0 1 N N N 23.706 -28.783 8.376 5.565  2.287  -0.762 OP1    6PO 3  
6PO "O5'"  "O5'" O 0 1 N N N 23.259 -29.505 5.872 4.508  0.368  0.492  "O5'"  6PO 4  
6PO "C5'"  "C5'" C 0 1 N N N 24.579 -29.094 5.597 3.982  -0.403 -0.590 "C5'"  6PO 5  
6PO "C4'"  "C4'" C 0 1 N N R 24.959 -28.340 4.452 2.767  -1.198 -0.107 "C4'"  6PO 6  
6PO "C3'"  "C3'" C 0 1 N N S 26.333 -27.888 4.699 2.258  -2.134 -1.226 "C3'"  6PO 7  
6PO "O3'"  "O3'" O 0 1 N N N 27.120 -28.064 3.585 2.750  -3.461 -1.031 "O3'"  6PO 8  
6PO "C2'"  "C2'" C 0 1 N N N 26.218 -26.460 5.037 0.721  -2.099 -1.074 "C2'"  6PO 9  
6PO "O4'"  "O4'" O 0 1 N N N 24.140 -27.150 4.338 1.661  -0.311 0.164  "O4'"  6PO 10 
6PO "C1'"  "C1'" C 0 1 N N R 25.000 -26.049 4.301 0.483  -1.146 0.119  "C1'"  6PO 11 
6PO N9     N9    N 0 1 Y N N 24.378 -24.885 4.884 -0.712 -0.330 -0.111 N9     6PO 12 
6PO C8     C8    C 0 1 Y N N 23.239 -24.955 5.617 -0.749 0.902  -0.696 C8     6PO 13 
6PO N7     N7    N 0 1 Y N N 22.825 -23.694 5.926 -1.974 1.337  -0.739 N7     6PO 14 
6PO C5     C5    C 0 1 Y N N 23.736 -22.814 5.369 -2.800 0.415  -0.185 C5     6PO 15 
6PO C4     C4    C 0 1 Y N N 24.724 -23.538 4.710 -2.000 -0.668 0.219  C4     6PO 16 
6PO C6     C6    C 0 1 Y N N 23.803 -21.360 5.374 -4.184 0.340  0.038  C6     6PO 17 
6PO N1     N1    N 0 1 Y N N 24.824 -20.716 4.741 -4.675 -0.743 0.624  N1     6PO 18 
6PO C2     C2    C 0 1 Y N N 25.770 -21.469 4.113 -3.883 -1.742 0.996  C2     6PO 19 
6PO N2     N2    N 0 1 N N N 26.849 -20.792 3.465 -4.446 -2.851 1.604  N2     6PO 20 
6PO N3     N3    N 0 1 Y N N 25.739 -22.838 4.080 -2.576 -1.719 0.793  N3     6PO 21 
6PO O6     O6    O 0 1 N N N 22.758 -20.649 6.014 -5.000 1.354  -0.337 O6     6PO 22 
6PO C1X    C1X   C 0 1 N N N 22.708 -19.238 6.102 -6.395 1.195  -0.072 C1X    6PO 23 
6PO C2X    C2X   C 0 1 N N N 21.673 -18.632 7.054 -7.152 2.432  -0.561 C2X    6PO 24 
6PO C3X    C3X   C 0 1 N N N 21.109 -17.263 6.704 -8.646 2.262  -0.278 C3X    6PO 25 
6PO HOP2   HO2P  H 0 0 N N N 21.661 -27.387 7.794 7.302  -0.215 0.704  HOP2   6PO 26 
6PO "H5'"  H3    H 0 1 N N N 25.176 -30.017 5.556 3.682  0.264  -1.399 "H5'"  6PO 27 
6PO "H5''" H4    H 0 0 N N N 24.891 -28.494 6.465 4.747  -1.091 -0.951 "H5''" 6PO 28 
6PO "H4'"  H5    H 0 1 N N N 24.906 -28.946 3.535 3.021  -1.774 0.783  "H4'"  6PO 29 
6PO "H3'"  H6    H 0 1 N N N 26.748 -28.434 5.559 2.554  -1.756 -2.204 "H3'"  6PO 30 
6PO "HO3'" H7    H 0 0 N N N 28.002 -27.765 3.770 2.461  -4.091 -1.705 "HO3'" 6PO 31 
6PO "H2'"  H8    H 0 1 N N N 27.099 -25.898 4.692 0.257  -1.703 -1.977 "H2'"  6PO 32 
6PO "H2''" H9    H 0 0 N N N 26.094 -26.317 6.121 0.336  -3.094 -0.852 "H2''" 6PO 33 
6PO "H1'"  H10   H 0 1 N N N 25.277 -25.827 3.260 0.384  -1.712 1.045  "H1'"  6PO 34 
6PO H8     H11   H 0 1 N N N 22.739 -25.866 5.910 0.112  1.436  -1.069 H8     6PO 35 
6PO HN1    H12   H 0 1 N N N 27.466 -21.463 3.054 -5.404 -2.889 1.752  HN1    6PO 36 
6PO HN2    H13   H 0 1 N N N 26.486 -20.193 2.752 -3.883 -3.590 1.882  HN2    6PO 37 
6PO H1X1   H14   H 0 0 N N N 23.700 -18.891 6.428 -6.766 0.313  -0.593 H1X1   6PO 38 
6PO H1X2   H15   H 0 0 N N N 22.497 -18.851 5.094 -6.550 1.076  1.001  H1X2   6PO 39 
6PO H2X1   H16   H 0 0 N N N 20.826 -19.332 7.108 -6.781 3.315  -0.040 H2X1   6PO 40 
6PO H2X2   H17   H 0 0 N N N 22.145 -18.550 8.044 -6.997 2.551  -1.634 H2X2   6PO 41 
6PO H3X1   H18   H 0 0 N N N 20.383 -16.958 7.472 -9.016 1.379  -0.799 H3X1   6PO 42 
6PO H3X2   H19   H 0 0 N N N 21.928 -16.529 6.661 -8.800 2.142  0.795  H3X2   6PO 43 
6PO H3X3   H20   H 0 0 N N N 20.609 -17.312 5.726 -9.184 3.143  -0.626 H3X3   6PO 44 
6PO OP3    O3P   O 0 1 N Y N ?      ?       ?     6.021  2.135  1.716  OP3    6PO 45 
6PO HOP3   H1    H 0 0 N Y N ?      ?       ?     6.780  2.735  1.699  HOP3   6PO 46 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
6PO N2    C2     SING N N 1  
6PO "O3'" "C3'"  SING N N 2  
6PO N3    C2     DOUB Y N 3  
6PO N3    C4     SING Y N 4  
6PO C2    N1     SING Y N 5  
6PO "C1'" "O4'"  SING N N 6  
6PO "C1'" N9     SING N N 7  
6PO "C1'" "C2'"  SING N N 8  
6PO "O4'" "C4'"  SING N N 9  
6PO "C4'" "C3'"  SING N N 10 
6PO "C4'" "C5'"  SING N N 11 
6PO "C3'" "C2'"  SING N N 12 
6PO C4    N9     SING Y N 13 
6PO C4    C5     DOUB Y N 14 
6PO N1    C6     DOUB Y N 15 
6PO N9    C8     SING Y N 16 
6PO C5    C6     SING Y N 17 
6PO C5    N7     SING Y N 18 
6PO C6    O6     SING N N 19 
6PO "C5'" "O5'"  SING N N 20 
6PO C8    N7     DOUB Y N 21 
6PO "O5'" P      SING N N 22 
6PO O6    C1X    SING N N 23 
6PO C1X   C2X    SING N N 24 
6PO C3X   C2X    SING N N 25 
6PO OP2   P      SING N N 26 
6PO P     OP1    DOUB N N 27 
6PO OP2   HOP2   SING N N 28 
6PO "C5'" "H5'"  SING N N 29 
6PO "C5'" "H5''" SING N N 30 
6PO "C4'" "H4'"  SING N N 31 
6PO "C3'" "H3'"  SING N N 32 
6PO "O3'" "HO3'" SING N N 33 
6PO "C2'" "H2'"  SING N N 34 
6PO "C2'" "H2''" SING N N 35 
6PO "C1'" "H1'"  SING N N 36 
6PO C8    H8     SING N N 37 
6PO N2    HN1    SING N N 38 
6PO N2    HN2    SING N N 39 
6PO C1X   H1X1   SING N N 40 
6PO C1X   H1X2   SING N N 41 
6PO C2X   H2X1   SING N N 42 
6PO C2X   H2X2   SING N N 43 
6PO C3X   H3X1   SING N N 44 
6PO C3X   H3X2   SING N N 45 
6PO C3X   H3X3   SING N N 46 
6PO P     OP3    SING N N 47 
6PO OP3   HOP3   SING N N 48 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
6PO SMILES           ACDLabs              12.01 "O=P(O)(O)OCC3OC(n2cnc1c2nc(nc1OCCC)N)CC3O"                                                                                                                        
6PO InChI            InChI                1.03  "InChI=1S/C13H20N5O7P/c1-2-3-23-12-10-11(16-13(14)17-12)18(6-15-10)9-4-7(19)8(25-9)5-24-26(20,21)22/h6-9,19H,2-5H2,1H3,(H2,14,16,17)(H2,20,21,22)/t7-,8+,9+/m0/s1" 
6PO InChIKey         InChI                1.03  KGDNBXAYKVVLQA-DJLDLDEBSA-N                                                                                                                                        
6PO SMILES_CANONICAL CACTVS               3.370 "CCCOc1nc(N)nc2n(cnc12)[C@H]3C[C@H](O)[C@@H](CO[P](O)(O)=O)O3"                                                                                                     
6PO SMILES           CACTVS               3.370 "CCCOc1nc(N)nc2n(cnc12)[CH]3C[CH](O)[CH](CO[P](O)(O)=O)O3"                                                                                                         
6PO SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "CCCOc1c2c(nc(n1)N)n(cn2)[C@H]3C[C@@H]([C@H](O3)COP(=O)(O)O)O"                                                                                                     
6PO SMILES           "OpenEye OEToolkits" 1.7.6 "CCCOc1c2c(nc(n1)N)n(cn2)C3CC(C(O3)COP(=O)(O)O)O"                                                                                                                  
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
6PO "SYSTEMATIC NAME" ACDLabs              12.01 "9-(2-deoxy-5-O-phosphono-beta-D-erythro-pentofuranosyl)-6-propoxy-9H-purin-2-amine"               
6PO "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "[(2R,3S,5R)-5-(2-azanyl-6-propoxy-purin-9-yl)-3-oxidanyl-oxolan-2-yl]methyl dihydrogen phosphate" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
6PO "Create component" 2012-04-27 RCSB 
6PO "Modify atom id"   2012-04-28 RCSB 
# 
