data_F3O
# 
_chem_comp.id                                    F3O 
_chem_comp.name                                  
;3'-O-L-phenylalanyladenosine 5'-(dihydrogen phosphate)
;
_chem_comp.type                                  "RNA LINKING" 
_chem_comp.pdbx_type                             ATOMN 
_chem_comp.formula                               "C19 H23 N6 O8 P" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2014-07-01 
_chem_comp.pdbx_modified_date                    2023-09-18 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   OBS 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        494.395 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     F3O 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   Y 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        4QJT 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
F3O P     P     P 0 1 N N N 131.311 3.949  44.074 1.002  5.295  -0.184 P     F3O 1  
F3O OP1   OP1   O 0 1 N N N 130.630 5.289  43.815 -0.440 5.912  0.183  OP1   F3O 2  
F3O OP2   OP2   O 0 1 N N N 132.810 4.119  43.752 1.915  5.455  0.969  OP2   F3O 3  
F3O "C1'" "C1'" C 0 1 N N R 127.040 3.718  46.522 1.760  -0.476 -0.400 "C1'" F3O 4  
F3O "C2'" "C2'" C 0 1 N N R 127.289 4.769  47.586 0.943  -0.713 0.896  "C2'" F3O 5  
F3O "O2'" "O2'" O 0 1 N N N 126.082 5.394  47.968 0.400  -2.035 0.922  "O2'" F3O 6  
F3O "C3'" "C3'" C 0 1 N N S 128.325 5.662  46.897 -0.181 0.343  0.767  "C3'" F3O 7  
F3O "O3'" "O3'" O 0 1 N N N 127.676 6.609  46.039 -1.391 -0.263 0.241  "O3'" F3O 8  
F3O "C4'" "C4'" C 0 1 N N R 129.108 4.668  46.037 0.384  1.378  -0.225 "C4'" F3O 9  
F3O "O4'" "O4'" O 0 1 N N N 128.282 3.483  45.925 1.714  0.957  -0.570 "O4'" F3O 10 
F3O "C5'" "C5'" C 0 1 N N N 130.453 4.246  46.558 0.429  2.759  0.432  "C5'" F3O 11 
F3O "O5'" "O5'" O 0 1 N N N 131.173 3.481  45.591 0.843  3.731  -0.530 "O5'" F3O 12 
F3O N9    N9    N 0 1 Y N N 126.570 2.465  47.070 3.142  -0.931 -0.229 N9    F3O 13 
F3O C8    C8    C 0 1 Y N N 126.989 1.851  48.177 4.206  -0.161 0.137  C8    F3O 14 
F3O N7    N7    N 0 1 Y N N 126.267 0.737  48.337 5.283  -0.888 0.193  N7    F3O 15 
F3O C6    C6    C 0 1 Y N N 124.353 -0.200 46.884 5.716  -3.362 -0.239 C6    F3O 16 
F3O N6    N6    N 0 1 N N N 124.078 -1.326 47.616 7.075  -3.381 0.019  N6    F3O 17 
F3O C5    C5    C 0 1 Y N N 125.368 0.669  47.299 4.981  -2.168 -0.132 C5    F3O 18 
F3O C4    C4    C 0 1 Y N N 125.573 1.774  46.490 3.602  -2.213 -0.400 C4    F3O 19 
F3O N3    N3    N 0 1 Y N N 124.832 1.968  45.383 3.047  -3.371 -0.741 N3    F3O 20 
F3O C2    C2    C 0 1 Y N N 123.908 1.115  45.052 3.775  -4.465 -0.824 C2    F3O 21 
F3O N1    N1    N 0 1 Y N N 123.659 0.050  45.775 5.072  -4.473 -0.578 N1    F3O 22 
F3O C     C     C 0 1 N N N 127.100 7.695  46.740 -2.273 -0.739 1.133  C     F3O 23 
F3O O     O     O 0 1 N N N 127.489 7.935  47.846 -2.042 -0.652 2.316  O     F3O 24 
F3O CA    CA    C 0 1 N N S 125.785 8.312  46.278 -3.551 -1.382 0.661  CA    F3O 25 
F3O N     N     N 0 1 N N N 125.212 7.524  45.209 -4.101 -2.224 1.731  N     F3O 26 
F3O CB    CB    C 0 1 N N N 124.859 8.576  47.517 -4.564 -0.295 0.296  CB    F3O 27 
F3O CG    CG    C 0 1 Y N N 123.515 9.286  47.215 -5.797 -0.933 -0.291 CG    F3O 28 
F3O CD1   CD1   C 0 1 Y N N 122.442 9.173  48.112 -6.841 -1.307 0.533  CD1   F3O 29 
F3O CE1   CE1   C 0 1 Y N N 121.232 9.813  47.816 -7.971 -1.893 -0.006 CE1   F3O 30 
F3O CZ    CZ    C 0 1 Y N N 121.047 10.560 46.635 -8.057 -2.105 -1.369 CZ    F3O 31 
F3O CE2   CE2   C 0 1 Y N N 122.103 10.674 45.728 -7.012 -1.732 -2.194 CE2   F3O 32 
F3O CD2   CD2   C 0 1 Y N N 123.326 10.038 46.033 -5.884 -1.140 -1.655 CD2   F3O 33 
F3O H1    H1    H 0 1 N N N 131.275 5.920  43.517 -1.090 5.841  -0.529 H1    F3O 34 
F3O H3    H3    H 0 1 N N N 126.318 4.107  45.789 1.293  -0.981 -1.246 H3    F3O 35 
F3O H4    H4    H 0 1 N N N 127.762 4.289  48.456 1.553  -0.528 1.780  H4    F3O 36 
F3O H5    H5    H 0 1 N N N 126.215 6.333  48.025 1.068  -2.734 0.911  H5    F3O 37 
F3O H6    H6    H 0 1 N N N 128.981 6.145  47.636 -0.379 0.809  1.733  H6    F3O 38 
F3O H7    H7    H 0 1 N N N 129.243 5.110  45.039 -0.240 1.413  -1.119 H7    F3O 39 
F3O H8    H8    H 0 1 N N N 130.311 3.636  47.462 -0.562 3.016  0.804  H8    F3O 40 
F3O H9    H9    H 0 1 N N N 131.036 5.144  46.810 1.136  2.744  1.261  H9    F3O 41 
F3O H10   H10   H 0 1 N N N 127.776 2.194  48.832 4.161  0.897  0.348  H10   F3O 42 
F3O H11   H11   H 0 1 N N N 123.339 -1.837 47.178 7.532  -2.564 0.276  H11   F3O 43 
F3O H12   H12   H 0 1 N N N 124.896 -1.900 47.665 7.572  -4.210 -0.058 H12   F3O 44 
F3O H13   H13   H 0 1 N N N 123.330 1.289  44.157 3.293  -5.390 -1.104 H13   F3O 45 
F3O H14   H14   H 0 1 N N N 126.031 9.301  45.865 -3.346 -1.996 -0.216 H14   F3O 46 
F3O H15   H15   H 0 1 N N N 124.351 7.938  44.914 -3.478 -2.989 1.945  H15   F3O 47 
F3O H16   H16   H 0 1 N N N 125.849 7.495  44.438 -4.299 -1.678 2.556  H16   F3O 48 
F3O H18   H18   H 0 1 N N N 124.631 7.605  47.981 -4.837 0.263  1.192  H18   F3O 49 
F3O H19   H19   H 0 1 N N N 125.418 9.201  48.229 -4.123 0.383  -0.434 H19   F3O 50 
F3O H20   H20   H 0 1 N N N 122.548 8.599  49.021 -6.775 -1.141 1.598  H20   F3O 51 
F3O H21   H21   H 0 1 N N N 120.413 9.732  48.516 -8.788 -2.185 0.638  H21   F3O 52 
F3O H22   H22   H 0 1 N N N 120.100 11.039 46.434 -8.939 -2.563 -1.790 H22   F3O 53 
F3O H23   H23   H 0 1 N N N 121.987 11.236 44.813 -7.080 -1.893 -3.259 H23   F3O 54 
F3O H24   H24   H 0 1 N N N 124.147 10.129 45.338 -5.068 -0.848 -2.299 H24   F3O 55 
F3O OP3   OP3   O 0 1 N Y N ?       ?      ?      1.607  6.068  -1.460 OP3   F3O 56 
F3O H2    H2    H 0 1 N Y N ?       ?      ?      1.730  7.018  -1.323 H2    F3O 57 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
F3O OP2   P     DOUB N N 1  
F3O OP1   P     SING N N 2  
F3O P     "O5'" SING N N 3  
F3O C2    N3    DOUB Y N 4  
F3O C2    N1    SING Y N 5  
F3O N     CA    SING N N 6  
F3O N3    C4    SING Y N 7  
F3O "O5'" "C5'" SING N N 8  
F3O CE2   CD2   DOUB Y N 9  
F3O CE2   CZ    SING Y N 10 
F3O N1    C6    DOUB Y N 11 
F3O "O4'" "C4'" SING N N 12 
F3O "O4'" "C1'" SING N N 13 
F3O CD2   CG    SING Y N 14 
F3O "C4'" "C5'" SING N N 15 
F3O "C4'" "C3'" SING N N 16 
F3O "O3'" C     SING N N 17 
F3O "O3'" "C3'" SING N N 18 
F3O CA    C     SING N N 19 
F3O CA    CB    SING N N 20 
F3O C4    N9    SING Y N 21 
F3O C4    C5    DOUB Y N 22 
F3O "C1'" N9    SING N N 23 
F3O "C1'" "C2'" SING N N 24 
F3O CZ    CE1   DOUB Y N 25 
F3O C     O     DOUB N N 26 
F3O C6    C5    SING Y N 27 
F3O C6    N6    SING N N 28 
F3O "C3'" "C2'" SING N N 29 
F3O N9    C8    SING Y N 30 
F3O CG    CB    SING N N 31 
F3O CG    CD1   DOUB Y N 32 
F3O C5    N7    SING Y N 33 
F3O "C2'" "O2'" SING N N 34 
F3O CE1   CD1   SING Y N 35 
F3O C8    N7    DOUB Y N 36 
F3O OP1   H1    SING N N 37 
F3O "C1'" H3    SING N N 38 
F3O "C2'" H4    SING N N 39 
F3O "O2'" H5    SING N N 40 
F3O "C3'" H6    SING N N 41 
F3O "C4'" H7    SING N N 42 
F3O "C5'" H8    SING N N 43 
F3O "C5'" H9    SING N N 44 
F3O C8    H10   SING N N 45 
F3O N6    H11   SING N N 46 
F3O N6    H12   SING N N 47 
F3O C2    H13   SING N N 48 
F3O CA    H14   SING N N 49 
F3O N     H15   SING N N 50 
F3O N     H16   SING N N 51 
F3O CB    H18   SING N N 52 
F3O CB    H19   SING N N 53 
F3O CD1   H20   SING N N 54 
F3O CE1   H21   SING N N 55 
F3O CZ    H22   SING N N 56 
F3O CE2   H23   SING N N 57 
F3O CD2   H24   SING N N 58 
F3O P     OP3   SING N N 59 
F3O OP3   H2    SING N N 60 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
F3O SMILES           ACDLabs              12.01 "O=P(O)(O)OCC4OC(n2cnc1c(ncnc12)N)C(O)C4OC(=O)C(N)Cc3ccccc3"                                                                                                                                                                
F3O InChI            InChI                1.03  "InChI=1S/C19H23N6O8P/c20-11(6-10-4-2-1-3-5-10)19(27)33-15-12(7-31-34(28,29)30)32-18(14(15)26)25-9-24-13-16(21)22-8-23-17(13)25/h1-5,8-9,11-12,14-15,18,26H,6-7,20H2,(H2,21,22,23)(H2,28,29,30)/t11-,12+,14+,15+,18+/m0/s1" 
F3O InChIKey         InChI                1.03  DITNEQHUTYSTHA-URQYDQELSA-N                                                                                                                                                                                                 
F3O SMILES_CANONICAL CACTVS               3.385 "N[C@@H](Cc1ccccc1)C(=O)O[C@H]2[C@@H](O)[C@@H](O[C@@H]2CO[P](O)(O)=O)n3cnc4c(N)ncnc34"                                                                                                                                      
F3O SMILES           CACTVS               3.385 "N[CH](Cc1ccccc1)C(=O)O[CH]2[CH](O)[CH](O[CH]2CO[P](O)(O)=O)n3cnc4c(N)ncnc34"                                                                                                                                               
F3O SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "c1ccc(cc1)C[C@@H](C(=O)O[C@@H]2[C@H](O[C@H]([C@@H]2O)n3cnc4c3ncnc4N)COP(=O)(O)O)N"                                                                                                                                         
F3O SMILES           "OpenEye OEToolkits" 1.7.6 "c1ccc(cc1)CC(C(=O)OC2C(OC(C2O)n3cnc4c3ncnc4N)COP(=O)(O)O)N"                                                                                                                                                                
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
F3O "SYSTEMATIC NAME" ACDLabs              12.01 
;3'-O-L-phenylalanyladenosine 5'-(dihydrogen phosphate)
;
F3O "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "[(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-4-oxidanyl-2-(phosphonooxymethyl)oxolan-3-yl] (2S)-2-azanyl-3-phenyl-propanoate" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
F3O "Create component"   2014-07-01 RCSB 
F3O "Initial release"    2014-10-01 RCSB 
F3O "Obsolete component" 2023-08-17 RCSB 
# 
