data_KPO
# 
_chem_comp.id                                    KPO 
_chem_comp.name                                  "1-[(8~{R},15~{S},18~{S})-15-(4-azanylbutyl)-18-(naphthalen-2-ylmethyl)-4,7,14,17,20-pentakis(oxidanylidene)-3,6,13,16,19-pentazabicyclo[20.3.1]hexacosa-1(25),22(26),23-trien-8-yl]guanidine" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C37 H49 N9 O5" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2022-06-01 
_chem_comp.pdbx_modified_date                    2023-06-09 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        699.842 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     KPO 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8A15 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
KPO N1  N1  N 0 1 N N N 5.582  -10.677 2.813  7.611  4.868  -0.304 N1  KPO 1   
KPO C7  C1  C 0 1 N N N -0.864 -14.600 3.571  -1.448 2.454  -1.365 C7  KPO 2   
KPO C8  C2  C 0 1 N N S -1.646 -13.553 2.772  -2.631 1.574  -1.679 C8  KPO 3   
KPO N2  N2  N 0 1 N N N 6.903  -10.362 4.781  6.593  3.032  -1.291 N2  KPO 4   
KPO C9  C3  C 0 1 N N N -2.395 -14.184 1.590  -3.911 2.238  -1.168 C9  KPO 5   
KPO O1  O1  O 0 1 N N N 6.680  -15.971 0.573  6.461  -1.214 -0.169 O1  KPO 6   
KPO C1  C4  C 0 1 N N R 4.089  -12.673 4.269  4.305  3.417  0.269  C1  KPO 7   
KPO C5  C5  C 0 1 N N N 1.238  -14.504 6.191  0.734  3.521  0.034  C5  KPO 8   
KPO C6  C6  C 0 1 N N N -0.031 -15.230 5.802  -0.459 4.404  -0.336 C6  KPO 9   
KPO N3  N3  N 0 1 N N N -0.871 -14.449 4.897  -1.636 3.544  -0.569 N3  KPO 10  
KPO C4  C7  C 0 1 N N N 2.080  -14.065 5.010  2.032  4.186  -0.427 C4  KPO 11  
KPO O4  O2  O 0 1 N N N -0.229 -15.495 3.002  -0.350 2.194  -1.808 O4  KPO 12  
KPO C3  C8  C 0 1 N N N 3.278  -13.249 5.430  3.049  4.168  0.716  C3  KPO 13  
KPO O3  O3  O 0 1 N N N -1.571 -10.804 3.465  -2.075 -0.642 -3.027 O3  KPO 14  
KPO C2  C9  C 0 1 N N N 5.916  -10.920 4.128  6.576  4.082  -0.403 C2  KPO 15  
KPO N4  N4  N 0 1 N N N -6.244 -10.940 0.915  -8.843 1.878  -1.022 N4  KPO 16  
KPO N   N5  N 0 1 N N N 5.160  -11.869 4.829  5.468  4.301  0.380  N   KPO 17  
KPO C   C10 C 0 1 N N N 4.593  -13.783 3.343  4.508  2.207  1.147  C   KPO 18  
KPO O   O4  O 0 1 N N N 3.924  -14.143 2.381  4.067  2.178  2.276  O   KPO 19  
KPO C10 C11 C 0 1 N N N -3.140 -13.159 0.711  -5.122 1.407  -1.595 C10 KPO 20  
KPO C11 C12 C 0 1 N N N -4.366 -12.523 1.351  -6.403 2.071  -1.084 C11 KPO 21  
KPO C12 C13 C 0 1 N N N -4.917 -11.413 0.476  -7.614 1.240  -1.512 C12 KPO 22  
KPO C13 C14 C 0 1 N N N -0.816 -11.242 2.597  -2.190 -0.794 -1.829 C13 KPO 23  
KPO C14 C15 C 0 1 N N S 0.048  -10.286 1.771  -2.040 -2.160 -1.210 C14 KPO 24  
KPO C15 C16 C 0 1 N N N -0.845 -9.240  1.071  -1.618 -2.016 0.254  C15 KPO 25  
KPO C16 C17 C 0 1 Y N N -0.124 -8.009  0.581  -2.673 -1.249 1.008  C16 KPO 26  
KPO C17 C18 C 0 1 Y N N -0.417 -6.790  1.132  -3.982 -1.598 0.872  C17 KPO 27  
KPO C18 C19 C 0 1 Y N N 0.287  -5.616  0.762  -4.968 -0.885 1.574  C18 KPO 28  
KPO C19 C20 C 0 1 Y N N 0.011  -4.349  1.336  -6.329 -1.217 1.459  C19 KPO 29  
KPO C20 C21 C 0 1 Y N N 0.753  -3.253  0.995  -7.257 -0.504 2.155  C20 KPO 30  
KPO C21 C22 C 0 1 Y N N 1.790  -3.359  0.087  -6.878 0.553  2.981  C21 KPO 31  
KPO C22 C23 C 0 1 Y N N 2.077  -4.554  -0.508 -5.570 0.902  3.117  C22 KPO 32  
KPO C23 C24 C 0 1 Y N N 1.327  -5.719  -0.195 -4.583 0.189  2.415  C23 KPO 33  
KPO C24 C25 C 0 1 Y N N 1.569  -6.983  -0.791 -3.222 0.521  2.530  C24 KPO 34  
KPO C25 C26 C 0 1 Y N N 0.861  -8.088  -0.409 -2.294 -0.196 1.839  C25 KPO 35  
KPO C26 C27 C 0 1 N N N 2.166  -11.074 0.790  -0.311 -3.834 -1.229 C26 KPO 36  
KPO C27 C28 C 0 1 N N N 2.793  -11.610 -0.486 0.763  -4.636 -1.922 C27 KPO 37  
KPO C28 C29 C 0 1 Y N N 4.286  -11.386 -0.585 1.861  -4.938 -0.934 C28 KPO 38  
KPO C29 C30 C 0 1 Y N N 5.175  -12.420 -0.309 2.985  -4.137 -0.880 C29 KPO 39  
KPO C30 C31 C 0 1 Y N N 6.551  -12.229 -0.371 3.985  -4.410 0.036  C30 KPO 40  
KPO C31 C32 C 0 1 N N N 7.489  -13.352 -0.013 5.212  -3.537 0.098  C31 KPO 41  
KPO C32 C33 C 0 1 N N N 6.701  -15.129 1.471  5.632  -1.240 0.716  C32 KPO 42  
KPO C33 C34 C 0 1 N N N 6.250  -15.475 2.879  5.366  -0.011 1.549  C33 KPO 43  
KPO C34 C35 C 0 1 Y N N 7.035  -10.983 -0.734 3.861  -5.488 0.892  C34 KPO 44  
KPO C35 C36 C 0 1 Y N N 6.165  -9.949  -1.013 2.740  -6.295 0.830  C35 KPO 45  
KPO C36 C37 C 0 1 Y N N 4.799  -10.148 -0.939 1.740  -6.018 -0.082 C36 KPO 46  
KPO N5  N6  N 0 1 N N N -0.715 -12.541 2.299  -2.456 0.268  -1.018 N5  KPO 47  
KPO N6  N7  N 0 1 N N N 0.834  -10.977 0.760  -1.006 -2.909 -1.957 N6  KPO 48  
KPO N7  N8  N 0 1 N N N 7.142  -13.887 1.294  4.930  -2.378 0.969  N7  KPO 49  
KPO N8  N9  N 0 1 N N N 5.765  -14.343 3.647  5.200  1.144  0.637  N8  KPO 50  
KPO O2  O5  O 0 1 N N N 2.838  -10.757 1.776  -0.552 -4.006 -0.053 O2  KPO 51  
KPO H1  H1  H 0 1 N N N 4.808  -11.235 2.514  7.599  5.609  0.322  H1  KPO 52  
KPO H2  H2  H 0 1 N N N -2.384 -13.086 3.441  -2.701 1.430  -2.757 H2  KPO 53  
KPO H3  H3  H 0 1 N N N 7.084  -10.620 5.730  7.375  2.877  -1.844 H3  KPO 54  
KPO H4  H4  H 0 1 N N N 7.477  -9.678  4.331  5.823  2.447  -1.365 H4  KPO 55  
KPO H5  H5  H 0 1 N N N -3.129 -14.900 1.987  -3.879 2.301  -0.080 H5  KPO 56  
KPO H6  H6  H 0 1 N N N -1.666 -14.716 0.961  -3.992 3.241  -1.587 H6  KPO 57  
KPO H7  H7  H 0 1 N N N 3.424  -12.021 3.683  4.188  3.099  -0.767 H7  KPO 58  
KPO H8  H8  H 0 1 N N N 1.843  -15.176 6.817  0.761  3.383  1.115  H8  KPO 59  
KPO H9  H9  H 0 1 N N N 0.962  -13.611 6.771  0.632  2.551  -0.453 H9  KPO 60  
KPO H10 H10 H 0 1 N N N -0.605 -15.449 6.714  -0.668 5.096  0.479  H10 KPO 61  
KPO H11 H11 H 0 1 N N N 0.241  -16.173 5.305  -0.231 4.964  -1.243 H11 KPO 62  
KPO H12 H12 H 0 1 N N N -1.484 -13.765 5.292  -2.500 3.745  -0.176 H12 KPO 63  
KPO H13 H13 H 0 1 N N N 1.456  -13.457 4.338  2.435  3.643  -1.281 H13 KPO 64  
KPO H14 H14 H 0 1 N N N 2.432  -14.959 4.475  1.829  5.218  -0.715 H14 KPO 65  
KPO H15 H15 H 0 1 N N N 3.941  -13.893 6.026  2.615  3.666  1.581  H15 KPO 66  
KPO H16 H16 H 0 1 N N N 2.924  -12.413 6.051  3.314  5.191  0.984  H16 KPO 67  
KPO H17 H17 H 0 1 N N N -6.557 -10.212 0.305  -9.658 1.347  -1.291 H17 KPO 68  
KPO H18 H18 H 0 1 N N N -6.894 -11.699 0.889  -8.810 2.006  -0.021 H18 KPO 69  
KPO H20 H20 H 0 1 N N N 5.376  -12.004 5.796  5.456  5.042  1.007  H20 KPO 70  
KPO H21 H21 H 0 1 N N N -3.463 -13.670 -0.208 -5.155 1.345  -2.683 H21 KPO 71  
KPO H22 H22 H 0 1 N N N -2.435 -12.355 0.455  -5.041 0.404  -1.176 H22 KPO 72  
KPO H23 H23 H 0 1 N N N -4.086 -12.105 2.329  -6.371 2.134  0.003  H23 KPO 73  
KPO H24 H24 H 0 1 N N N -5.141 -13.292 1.488  -6.484 3.074  -1.504 H24 KPO 74  
KPO H25 H25 H 0 1 N N N -5.001 -11.788 -0.555 -7.533 0.237  -1.093 H25 KPO 75  
KPO H26 H26 H 0 1 N N N -4.216 -10.565 0.502  -7.646 1.178  -2.600 H26 KPO 76  
KPO H27 H27 H 0 1 N N N 0.725  -9.754  2.456  -2.990 -2.692 -1.266 H27 KPO 77  
KPO H28 H28 H 0 1 N N N -1.619 -8.920  1.784  -1.501 -3.005 0.697  H28 KPO 78  
KPO H29 H29 H 0 1 N N N -1.321 -9.723  0.205  -0.671 -1.479 0.308  H29 KPO 79  
KPO H30 H30 H 0 1 N N N -1.205 -6.721  1.868  -4.260 -2.419 0.228  H30 KPO 80  
KPO H31 H31 H 0 1 N N N -0.793 -4.249  2.050  -6.637 -2.032 0.822  H31 KPO 81  
KPO H32 H32 H 0 1 N N N 0.527  -2.295  1.439  -8.302 -0.760 2.065  H32 KPO 82  
KPO H33 H33 H 0 1 N N N 2.380  -2.487  -0.154 -7.635 1.102  3.522  H33 KPO 83  
KPO H34 H34 H 0 1 N N N 2.883  -4.614  -1.224 -5.291 1.724  3.761  H34 KPO 84  
KPO H35 H35 H 0 1 N N N 2.324  -7.074  -1.558 -2.914 1.334  3.170  H35 KPO 85  
KPO H36 H36 H 0 1 N N N 1.066  -9.038  -0.880 -1.249 0.061  1.929  H36 KPO 86  
KPO H37 H37 H 0 1 N N N 2.312  -11.113 -1.342 0.339  -5.569 -2.293 H37 KPO 87  
KPO H38 H38 H 0 1 N N N 2.603  -12.692 -0.536 1.167  -4.062 -2.756 H38 KPO 88  
KPO H39 H39 H 0 1 N N N 4.788  -13.392 -0.041 3.084  -3.298 -1.554 H39 KPO 89  
KPO H40 H40 H 0 1 N N N 7.409  -14.149 -0.767 6.046  -4.107 0.509  H40 KPO 90  
KPO H41 H41 H 0 1 N N N 8.521  -12.972 0.010  5.464  -3.188 -0.903 H41 KPO 91  
KPO H42 H42 H 0 1 N N N 5.440  -16.216 2.809  4.456  -0.153 2.132  H42 KPO 92  
KPO H43 H43 H 0 1 N N N 7.104  -15.915 3.416  6.208  0.168  2.219  H43 KPO 93  
KPO H44 H44 H 0 1 N N N 8.101  -10.820 -0.799 4.639  -5.699 1.610  H44 KPO 94  
KPO H45 H45 H 0 1 N N N 6.553  -8.980  -1.290 2.647  -7.142 1.494  H45 KPO 95  
KPO H46 H46 H 0 1 N N N 4.126  -9.332  -1.159 0.863  -6.647 -0.128 H46 KPO 96  
KPO H47 H47 H 0 1 N N N 0.044  -12.834 1.718  -2.526 0.169  -0.055 H47 KPO 97  
KPO H48 H48 H 0 1 N N N 0.348  -11.405 -0.002 -0.833 -2.754 -2.899 H48 KPO 98  
KPO H49 H49 H 0 1 N N N 7.239  -13.295 2.094  4.276  -2.425 1.684  H49 KPO 99  
KPO H50 H50 H 0 1 N N N 6.310  -13.983 4.404  5.559  1.146  -0.264 H50 KPO 100 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
KPO C35 C36 DOUB Y N 1   
KPO C35 C34 SING Y N 2   
KPO C36 C28 SING Y N 3   
KPO C24 C25 DOUB Y N 4   
KPO C24 C23 SING Y N 5   
KPO C34 C30 DOUB Y N 6   
KPO C28 C27 SING N N 7   
KPO C28 C29 DOUB Y N 8   
KPO C22 C23 DOUB Y N 9   
KPO C22 C21 SING Y N 10  
KPO C27 C26 SING N N 11  
KPO C25 C16 SING Y N 12  
KPO C30 C29 SING Y N 13  
KPO C30 C31 SING N N 14  
KPO C23 C18 SING Y N 15  
KPO C31 N7  SING N N 16  
KPO C21 C20 DOUB Y N 17  
KPO C12 N4  SING N N 18  
KPO C12 C11 SING N N 19  
KPO O1  C32 DOUB N N 20  
KPO C16 C15 SING N N 21  
KPO C16 C17 DOUB Y N 22  
KPO C10 C11 SING N N 23  
KPO C10 C9  SING N N 24  
KPO N6  C26 SING N N 25  
KPO N6  C14 SING N N 26  
KPO C18 C17 SING Y N 27  
KPO C18 C19 DOUB Y N 28  
KPO C26 O2  DOUB N N 29  
KPO C20 C19 SING Y N 30  
KPO C15 C14 SING N N 31  
KPO N7  C32 SING N N 32  
KPO C32 C33 SING N N 33  
KPO C9  C8  SING N N 34  
KPO C14 C13 SING N N 35  
KPO N5  C13 SING N N 36  
KPO N5  C8  SING N N 37  
KPO O   C   DOUB N N 38  
KPO C13 O3  DOUB N N 39  
KPO C8  C7  SING N N 40  
KPO N1  C2  DOUB N N 41  
KPO C33 N8  SING N N 42  
KPO O4  C7  DOUB N N 43  
KPO C   N8  SING N N 44  
KPO C   C1  SING N N 45  
KPO C7  N3  SING N N 46  
KPO C2  N2  SING N N 47  
KPO C2  N   SING N N 48  
KPO C1  N   SING N N 49  
KPO C1  C3  SING N N 50  
KPO N3  C6  SING N N 51  
KPO C4  C3  SING N N 52  
KPO C4  C5  SING N N 53  
KPO C6  C5  SING N N 54  
KPO N1  H1  SING N N 55  
KPO C8  H2  SING N N 56  
KPO N2  H3  SING N N 57  
KPO N2  H4  SING N N 58  
KPO C9  H5  SING N N 59  
KPO C9  H6  SING N N 60  
KPO C1  H7  SING N N 61  
KPO C5  H8  SING N N 62  
KPO C5  H9  SING N N 63  
KPO C6  H10 SING N N 64  
KPO C6  H11 SING N N 65  
KPO N3  H12 SING N N 66  
KPO C4  H13 SING N N 67  
KPO C4  H14 SING N N 68  
KPO C3  H15 SING N N 69  
KPO C3  H16 SING N N 70  
KPO N4  H17 SING N N 71  
KPO N4  H18 SING N N 72  
KPO N   H20 SING N N 73  
KPO C10 H21 SING N N 74  
KPO C10 H22 SING N N 75  
KPO C11 H23 SING N N 76  
KPO C11 H24 SING N N 77  
KPO C12 H25 SING N N 78  
KPO C12 H26 SING N N 79  
KPO C14 H27 SING N N 80  
KPO C15 H28 SING N N 81  
KPO C15 H29 SING N N 82  
KPO C17 H30 SING N N 83  
KPO C19 H31 SING N N 84  
KPO C20 H32 SING N N 85  
KPO C21 H33 SING N N 86  
KPO C22 H34 SING N N 87  
KPO C24 H35 SING N N 88  
KPO C25 H36 SING N N 89  
KPO C27 H37 SING N N 90  
KPO C27 H38 SING N N 91  
KPO C29 H39 SING N N 92  
KPO C31 H40 SING N N 93  
KPO C31 H41 SING N N 94  
KPO C33 H42 SING N N 95  
KPO C33 H43 SING N N 96  
KPO C34 H44 SING N N 97  
KPO C35 H45 SING N N 98  
KPO C36 H46 SING N N 99  
KPO N5  H47 SING N N 100 
KPO N6  H48 SING N N 101 
KPO N7  H49 SING N N 102 
KPO N8  H50 SING N N 103 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
KPO InChI            InChI                1.06  "InChI=1S/C37H49N9O5/c38-16-5-3-12-29-34(49)41-17-6-4-13-30(46-37(39)40)35(50)43-23-33(48)42-22-26-9-7-8-24(18-26)21-32(47)44-31(36(51)45-29)20-25-14-15-27-10-1-2-11-28(27)19-25/h1-2,7-11,14-15,18-19,29-31H,3-6,12-13,16-17,20-23,38H2,(H,41,49)(H,42,48)(H,43,50)(H,44,47)(H,45,51)(H4,39,40,46)/t29-,30+,31-/m0/s1" 
KPO InChIKey         InChI                1.06  NLCKEQZZDLBRBR-YPKYBTACSA-N                                                                                                                                                                                                                                                                                              
KPO SMILES_CANONICAL CACTVS               3.385 "NCCCC[C@@H]1NC(=O)[C@H](Cc2ccc3ccccc3c2)NC(=O)Cc4cccc(CNC(=O)CNC(=O)[C@@H](CCCCNC1=O)NC(N)=N)c4"                                                                                                                                                                                                                        
KPO SMILES           CACTVS               3.385 "NCCCC[CH]1NC(=O)[CH](Cc2ccc3ccccc3c2)NC(=O)Cc4cccc(CNC(=O)CNC(=O)[CH](CCCCNC1=O)NC(N)=N)c4"                                                                                                                                                                                                                             
KPO SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "[H]/N=C(/N)\N[C@@H]1CCCCNC(=O)[C@@H](NC(=O)[C@@H](NC(=O)Cc2cccc(c2)CNC(=O)CNC1=O)Cc3ccc4ccccc4c3)CCCCN"                                                                                                                                                                                                                 
KPO SMILES           "OpenEye OEToolkits" 2.0.7 "c1ccc2cc(ccc2c1)CC3C(=O)NC(C(=O)NCCCCC(C(=O)NCC(=O)NCc4cccc(c4)CC(=O)N3)NC(=N)N)CCCCN"                                                                                                                                                                                                                                  
# 
_pdbx_chem_comp_identifier.comp_id           KPO 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "1-[(8~{R},15~{S},18~{S})-15-(4-azanylbutyl)-18-(naphthalen-2-ylmethyl)-4,7,14,17,20-pentakis(oxidanylidene)-3,6,13,16,19-pentazabicyclo[20.3.1]hexacosa-1(25),22(26),23-trien-8-yl]guanidine" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
KPO "Create component"  2022-06-01 PDBE 
KPO "Modify descriptor" 2022-08-22 RCSB 
KPO "Initial release"   2023-06-14 RCSB 
# 
