data_A1IMP
# 
_chem_comp.id                                    A1IMP 
_chem_comp.name                                  "7-[(4-chlorophenyl)methyl]-3-methyl-1-(3-oxidanylpropyl)-8-(1,1,3,3-tetramethyl-2-oxidanyl-isoindol-5-yl)oxy-purine-2,6-dione" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C28 H32 Cl N5 O5" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2024-08-27 
_chem_comp.pdbx_modified_date                    2025-09-05 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        554.037 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     A1IMP 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        9GL6 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
_chem_comp.pdbx_pcm                              ? 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
A1IMP C02  C1  C  0 1 N N N N N N 181.611 174.113 118.664 3.505  0.601  -0.187 C02  A1IMP 1  
A1IMP C03  C2  C  0 1 Y N N N N N 181.950 174.092 120.075 2.124  0.574  -0.452 C03  A1IMP 2  
A1IMP C04  C3  C  0 1 Y N N N N N 181.409 175.017 121.011 1.302  1.533  0.131  C04  A1IMP 3  
A1IMP C06  C4  C  0 1 Y N N N N N 182.749 173.684 122.144 0.039  0.243  -1.073 C06  A1IMP 4  
A1IMP C08  C5  C  0 1 Y N N N N N 184.379 173.869 123.857 -2.269 0.265  -1.340 C08  A1IMP 5  
A1IMP C09  C6  C  0 1 Y N N N N N 185.406 174.485 123.152 -2.655 1.482  -1.883 C09  A1IMP 6  
A1IMP C10  C7  C  0 1 Y N N N N N 186.344 175.263 123.828 -3.883 2.023  -1.559 C10  A1IMP 7  
A1IMP C11  C8  C  0 1 Y N N N N N 186.231 175.410 125.195 -4.729 1.355  -0.694 C11  A1IMP 8  
A1IMP C12  C9  C  0 1 N N N N N N 187.145 176.203 126.081 -6.105 1.696  -0.167 C12  A1IMP 9  
A1IMP C13  C10 C  0 1 N N N N N N 188.611 175.873 125.835 -6.167 3.172  0.231  C13  A1IMP 10 
A1IMP C14  C11 C  0 1 N N N N N N 186.912 177.713 125.928 -7.167 1.388  -1.225 C14  A1IMP 11 
A1IMP C17  C12 C  0 1 N N N N N N 185.303 175.112 127.381 -5.460 -0.349 0.748  C17  A1IMP 12 
A1IMP C18  C13 C  0 1 N N N N N N 184.268 176.165 127.797 -6.279 -1.426 0.034  C18  A1IMP 13 
A1IMP C19  C14 C  0 1 N N N N N N 185.212 173.910 128.309 -4.885 -0.902 2.053  C19  A1IMP 14 
A1IMP C20  C15 C  0 1 Y N N N N N 185.196 174.789 125.909 -4.346 0.140  -0.150 C20  A1IMP 15 
A1IMP C21  C16 C  0 1 Y N N N N N 184.254 174.009 125.251 -3.119 -0.405 -0.472 C21  A1IMP 16 
A1IMP C23  C17 C  0 1 N N N N N N 183.613 172.106 120.299 1.705  -1.389 -2.020 C23  A1IMP 17 
A1IMP C24  C18 C  0 1 Y N N N N N 184.968 172.519 119.783 1.646  -2.637 -1.176 C24  A1IMP 18 
A1IMP C25  C19 C  0 1 Y N N N N N 185.121 172.955 118.467 2.756  -3.034 -0.453 C25  A1IMP 19 
A1IMP C26  C20 C  0 1 Y N N N N N 186.375 173.336 117.997 2.703  -4.178 0.321  C26  A1IMP 20 
A1IMP C27  C21 C  0 1 Y N N N N N 187.454 173.271 118.863 1.540  -4.925 0.371  C27  A1IMP 21 
A1IMP C29  C22 C  0 1 Y N N N N N 187.335 172.842 120.172 0.430  -4.527 -0.353 C29  A1IMP 22 
A1IMP C30  C23 C  0 1 Y N N N N N 186.075 172.462 120.624 0.482  -3.380 -1.122 C30  A1IMP 23 
A1IMP C32  C24 C  0 1 N N N N N N 180.007 176.926 121.680 1.029  3.507  1.587  C32  A1IMP 24 
A1IMP C33  C25 C  0 1 N N N N N N 180.130 176.091 119.221 3.199  2.476  1.186  C33  A1IMP 25 
A1IMP C35  C26 C  0 1 N N N N N N 180.309 175.211 116.838 5.440  1.588  0.907  C35  A1IMP 26 
A1IMP C36  C27 C  0 1 N N N N N N 181.138 176.231 116.048 6.143  2.463  -0.132 C36  A1IMP 27 
A1IMP C37  C28 C  0 1 N N N N N N 180.592 176.309 114.622 7.644  2.497  0.160  C37  A1IMP 28 
A1IMP N05  N1  N  0 1 Y N N N N N 181.924 174.746 122.311 0.054  1.289  -0.275 N05  A1IMP 29 
A1IMP N15  N2  N  0 1 N N N N N N 186.680 175.790 127.483 -6.303 0.837  1.022  N15  A1IMP 30 
A1IMP N22  N3  N  0 1 Y N N N N N 182.824 173.224 120.825 1.296  -0.236 -1.215 N22  A1IMP 31 
A1IMP N31  N4  N  0 1 N N N N N N 180.532 175.998 120.662 1.872  2.487  0.959  N31  A1IMP 32 
A1IMP N34  N5  N  0 1 N N N N N N 180.709 175.109 118.264 4.003  1.555  0.627  N34  A1IMP 33 
A1IMP O01  O1  O  0 1 N N N N N N 182.083 173.302 117.842 4.244  -0.231 -0.683 O01  A1IMP 34 
A1IMP O07  O2  O  0 1 N N N N N N 183.458 173.097 123.160 -1.063 -0.273 -1.662 O07  A1IMP 35 
A1IMP O16  O3  O  0 1 N N N N N N 187.477 175.501 128.362 -5.867 1.519  2.240  O16  A1IMP 36 
A1IMP O38  O4  O  0 1 N N N N N N 180.058 175.055 114.290 8.300  3.315  -0.811 O38  A1IMP 37 
A1IMP O39  O5  O  0 1 N N N N N N 179.348 176.947 118.847 3.682  3.322  1.915  O39  A1IMP 38 
A1IMP CL28 CL1 CL 0 0 N N N N N N 189.040 173.754 118.271 1.473  -6.363 1.343  CL28 A1IMP 39 
A1IMP H1   H1  H  0 1 N N N N N N 185.477 174.361 122.082 -1.995 2.006  -2.559 H1   A1IMP 40 
A1IMP H2   H2  H  0 1 N N N N N N 187.147 175.744 123.290 -4.183 2.971  -1.981 H2   A1IMP 41 
A1IMP H3   H3  H  0 1 N N N N N N 189.241 176.477 126.505 -5.954 3.792  -0.640 H3   A1IMP 42 
A1IMP H4   H4  H  0 1 N N N N N N 188.784 174.805 126.033 -7.163 3.405  0.608  H4   A1IMP 43 
A1IMP H5   H5  H  0 1 N N N N N N 188.867 176.099 124.789 -5.429 3.370  1.008  H5   A1IMP 44 
A1IMP H6   H6  H  0 1 N N N N N N 187.598 178.260 126.591 -7.050 0.359  -1.567 H6   A1IMP 45 
A1IMP H7   H7  H  0 1 N N N N N N 187.097 178.009 124.885 -8.159 1.516  -0.792 H7   A1IMP 46 
A1IMP H8   H8  H  0 1 N N N N N N 185.873 177.953 126.198 -7.047 2.067  -2.069 H8   A1IMP 47 
A1IMP H9   H9  H  0 1 N N N N N N 184.372 176.378 128.871 -6.543 -1.080 -0.965 H9   A1IMP 48 
A1IMP H10  H10 H  0 1 N N N N N N 184.434 177.089 127.223 -5.690 -2.340 -0.042 H10  A1IMP 49 
A1IMP H11  H11 H  0 1 N N N N N N 183.256 175.784 127.595 -7.189 -1.626 0.601  H11  A1IMP 50 
A1IMP H12  H12 H  0 1 N N N N N N 185.300 174.245 129.353 -5.700 -1.214 2.706  H12  A1IMP 51 
A1IMP H13  H13 H  0 1 N N N N N N 184.244 173.408 128.165 -4.247 -1.758 1.835  H13  A1IMP 52 
A1IMP H14  H14 H  0 1 N N N N N N 186.027 173.207 128.080 -4.299 -0.128 2.548  H14  A1IMP 53 
A1IMP H15  H15 H  0 1 N N N N N N 183.453 173.526 125.791 -2.820 -1.352 -0.047 H15  A1IMP 54 
A1IMP H16  H16 H  0 1 N N N N N N 183.053 171.642 119.474 2.723  -1.240 -2.378 H16  A1IMP 55 
A1IMP H17  H17 H  0 1 N N N N N N 183.756 171.371 121.105 1.032  -1.495 -2.872 H17  A1IMP 56 
A1IMP H18  H18 H  0 1 N N N N N N 184.264 172.997 117.811 3.664  -2.451 -0.493 H18  A1IMP 57 
A1IMP H19  H19 H  0 1 N N N N N N 186.504 173.675 116.980 3.569  -4.489 0.885  H19  A1IMP 58 
A1IMP H20  H20 H  0 1 N N N N N N 188.195 172.803 120.824 -0.478 -5.110 -0.313 H20  A1IMP 59 
A1IMP H21  H21 H  0 1 N N N N N N 185.955 172.118 121.641 -0.386 -3.066 -1.683 H21  A1IMP 60 
A1IMP H22  H22 H  0 1 N N N N N N 180.434 176.674 122.662 1.649  4.164  2.198  H22  A1IMP 61 
A1IMP H23  H23 H  0 1 N N N N N N 180.283 177.957 121.414 0.530  4.093  0.815  H23  A1IMP 62 
A1IMP H24  H24 H  0 1 N N N N N N 178.911 176.840 121.724 0.282  3.024  2.216  H24  A1IMP 63 
A1IMP H25  H25 H  0 1 N N N N N N 179.251 175.510 116.792 5.842  0.575  0.861  H25  A1IMP 64 
A1IMP H26  H26 H  0 1 N N N N N N 180.431 174.223 116.369 5.608  2.000  1.902  H26  A1IMP 65 
A1IMP H27  H27 H  0 1 N N N N N N 182.191 175.913 116.024 5.975  2.051  -1.128 H27  A1IMP 66 
A1IMP H28  H28 H  0 1 N N N N N N 181.064 177.218 116.527 5.741  3.476  -0.086 H28  A1IMP 67 
A1IMP H29  H29 H  0 1 N N N N N N 181.404 176.565 113.925 7.811  2.909  1.155  H29  A1IMP 68 
A1IMP H30  H30 H  0 1 N N N N N N 179.805 177.076 114.565 8.046  1.485  0.113  H30  A1IMP 69 
A1IMP H31  H31 H  0 1 N N N N N N 187.006 175.273 129.155 -6.338 2.345  2.418  H31  A1IMP 70 
A1IMP H32  H32 H  0 1 N N N N N N 179.712 175.082 113.406 9.257  3.382  -0.687 H32  A1IMP 71 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
A1IMP O38  C37 SING N N 1  
A1IMP C37  C36 SING N N 2  
A1IMP C36  C35 SING N N 3  
A1IMP C35  N34 SING N N 4  
A1IMP O01  C02 DOUB N N 5  
A1IMP C26  C25 DOUB Y N 6  
A1IMP C26  C27 SING Y N 7  
A1IMP N34  C02 SING N N 8  
A1IMP N34  C33 SING N N 9  
A1IMP CL28 C27 SING N N 10 
A1IMP C25  C24 SING Y N 11 
A1IMP C02  C03 SING N N 12 
A1IMP O39  C33 DOUB N N 13 
A1IMP C27  C29 DOUB Y N 14 
A1IMP C33  N31 SING N N 15 
A1IMP C24  C23 SING N N 16 
A1IMP C24  C30 DOUB Y N 17 
A1IMP C03  N22 SING Y N 18 
A1IMP C03  C04 DOUB Y N 19 
A1IMP C29  C30 SING Y N 20 
A1IMP C23  N22 SING N N 21 
A1IMP N31  C04 SING N N 22 
A1IMP N31  C32 SING N N 23 
A1IMP N22  C06 SING Y N 24 
A1IMP C04  N05 SING Y N 25 
A1IMP C06  N05 DOUB Y N 26 
A1IMP C06  O07 SING N N 27 
A1IMP C09  C10 DOUB Y N 28 
A1IMP C09  C08 SING Y N 29 
A1IMP O07  C08 SING N N 30 
A1IMP C10  C11 SING Y N 31 
A1IMP C08  C21 DOUB Y N 32 
A1IMP C11  C20 DOUB Y N 33 
A1IMP C11  C12 SING N N 34 
A1IMP C21  C20 SING Y N 35 
A1IMP C13  C12 SING N N 36 
A1IMP C20  C17 SING N N 37 
A1IMP C14  C12 SING N N 38 
A1IMP C12  N15 SING N N 39 
A1IMP C17  N15 SING N N 40 
A1IMP C17  C18 SING N N 41 
A1IMP C17  C19 SING N N 42 
A1IMP N15  O16 SING N N 43 
A1IMP C09  H1  SING N N 44 
A1IMP C10  H2  SING N N 45 
A1IMP C13  H3  SING N N 46 
A1IMP C13  H4  SING N N 47 
A1IMP C13  H5  SING N N 48 
A1IMP C14  H6  SING N N 49 
A1IMP C14  H7  SING N N 50 
A1IMP C14  H8  SING N N 51 
A1IMP C18  H9  SING N N 52 
A1IMP C18  H10 SING N N 53 
A1IMP C18  H11 SING N N 54 
A1IMP C19  H12 SING N N 55 
A1IMP C19  H13 SING N N 56 
A1IMP C19  H14 SING N N 57 
A1IMP C21  H15 SING N N 58 
A1IMP C23  H16 SING N N 59 
A1IMP C23  H17 SING N N 60 
A1IMP C25  H18 SING N N 61 
A1IMP C26  H19 SING N N 62 
A1IMP C29  H20 SING N N 63 
A1IMP C30  H21 SING N N 64 
A1IMP C32  H22 SING N N 65 
A1IMP C32  H23 SING N N 66 
A1IMP C32  H24 SING N N 67 
A1IMP C35  H25 SING N N 68 
A1IMP C35  H26 SING N N 69 
A1IMP C36  H27 SING N N 70 
A1IMP C36  H28 SING N N 71 
A1IMP C37  H29 SING N N 72 
A1IMP C37  H30 SING N N 73 
A1IMP O16  H31 SING N N 74 
A1IMP O38  H32 SING N N 75 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
A1IMP InChI            InChI                1.06  "InChI=1S/C28H32ClN5O5/c1-27(2)20-12-11-19(15-21(20)28(3,4)34(27)38)39-25-30-23-22(33(25)16-17-7-9-18(29)10-8-17)24(36)32(13-6-14-35)26(37)31(23)5/h7-12,15,35,38H,6,13-14,16H2,1-5H3" 
A1IMP InChIKey         InChI                1.06  KVWONESNCHOGAF-UHFFFAOYSA-N                                                                                                                                                            
A1IMP SMILES_CANONICAL CACTVS               3.385 "CN1C(=O)N(CCCO)C(=O)c2n(Cc3ccc(Cl)cc3)c(Oc4ccc5c(c4)C(C)(C)N(O)C5(C)C)nc12"                                                                                                           
A1IMP SMILES           CACTVS               3.385 "CN1C(=O)N(CCCO)C(=O)c2n(Cc3ccc(Cl)cc3)c(Oc4ccc5c(c4)C(C)(C)N(O)C5(C)C)nc12"                                                                                                           
A1IMP SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC1(c2ccc(cc2C(N1O)(C)C)Oc3nc4c(n3Cc5ccc(cc5)Cl)C(=O)N(C(=O)N4C)CCCO)C"                                                                                                               
A1IMP SMILES           "OpenEye OEToolkits" 2.0.7 "CC1(c2ccc(cc2C(N1O)(C)C)Oc3nc4c(n3Cc5ccc(cc5)Cl)C(=O)N(C(=O)N4C)CCCO)C"                                                                                                               
# 
_pdbx_chem_comp_identifier.comp_id           A1IMP 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "7-[(4-chlorophenyl)methyl]-3-methyl-1-(3-oxidanylpropyl)-8-(1,1,3,3-tetramethyl-2-oxidanyl-isoindol-5-yl)oxy-purine-2,6-dione" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
A1IMP "Create component" 2024-08-27 PDBE 
A1IMP "Initial release"  2025-09-10 RCSB 
# 
