data_GNP
# 
_chem_comp.id                                    GNP 
_chem_comp.name                                  "PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C10 H17 N6 O13 P3" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     1999-07-08 
_chem_comp.pdbx_modified_date                    2011-06-04 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         GTN 
_chem_comp.formula_weight                        522.196 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     GNP 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        ? 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        1CTQ 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
GNP PG     PG   P 0 1 N N N 4.935  31.507 21.691 -1.231 -0.295 7.212  PG     GNP 1  
GNP O1G    O1G  O 0 1 N N N 4.899  32.144 23.047 -1.759 1.078  7.063  O1G    GNP 2  
GNP O2G    O2G  O 0 1 N N N 4.129  32.343 20.710 -2.158 -1.118 8.240  O2G    GNP 3  
GNP O3G    O3G  O 0 1 N N N 4.556  30.076 21.650 0.274  -0.234 7.778  O3G    GNP 4  
GNP N3B    N3B  N 0 1 N N N 6.611  31.682 21.302 -1.236 -1.064 5.714  N3B    GNP 5  
GNP PB     PB   P 0 1 N N R 7.202  31.350 19.762 -0.252 -0.151 4.699  PB     GNP 6  
GNP O1B    O1B  O 0 1 N N N 7.408  29.908 19.616 -0.795 1.221  4.589  O1B    GNP 7  
GNP O2B    O2B  O 0 1 N N N 6.425  32.127 18.752 1.237  -0.091 5.307  O2B    GNP 8  
GNP O3A    O3A  O 0 1 N N N 8.690  32.006 19.856 -0.209 -0.830 3.240  O3A    GNP 9  
GNP PA     PA   P 0 1 N N S 9.197  33.390 19.367 0.744  0.089  2.326  PA     GNP 10 
GNP O1A    O1A  O 0 1 N N N 9.236  33.433 17.890 0.185  1.458  2.252  O1A    GNP 11 
GNP O2A    O2A  O 0 1 N N N 8.532  34.468 20.185 2.216  0.145  2.974  O2A    GNP 12 
GNP "O5'"  O5*  O 0 1 N N N 10.648 33.354 19.815 0.832  -0.534 0.845  "O5'"  GNP 13 
GNP "C5'"  C5*  C 0 1 N N N 11.013 33.228 21.198 1.688  0.322  0.086  "C5'"  GNP 14 
GNP "C4'"  C4*  C 0 1 N N R 12.433 33.663 21.389 1.815  -0.217 -1.339 "C4'"  GNP 15 
GNP "O4'"  O4*  O 0 1 N N N 13.401 32.943 20.714 0.524  -0.237 -1.986 "O4'"  GNP 16 
GNP "C3'"  C3*  C 0 1 N N S 12.657 35.142 20.956 2.674  0.734  -2.202 "C3'"  GNP 17 
GNP "O3'"  O3*  O 0 1 N N N 13.626 35.786 21.804 4.018  0.258  -2.285 "O3'"  GNP 18 
GNP "C2'"  C2*  C 0 1 N N R 13.257 34.966 19.546 1.997  0.695  -3.592 "C2'"  GNP 19 
GNP "O2'"  O2*  O 0 1 N N N 14.067 36.035 19.166 2.904  0.196  -4.577 "O2'"  GNP 20 
GNP "C1'"  C1*  C 0 1 N N R 14.116 33.758 19.817 0.808  -0.272 -3.402 "C1'"  GNP 21 
GNP N9     N9   N 0 1 Y N N 14.351 32.999 18.572 -0.352 0.188  -4.166 N9     GNP 22 
GNP C8     C8   C 0 1 Y N N 13.285 32.569 17.679 -1.315 1.051  -3.730 C8     GNP 23 
GNP N7     N7   N 0 1 Y N N 13.785 31.834 16.715 -2.196 1.240  -4.668 N7     GNP 24 
GNP C5     C5   C 0 1 Y N N 15.262 31.974 16.869 -1.853 0.512  -5.759 C5     GNP 25 
GNP C6     C6   C 0 1 Y N N 16.309 31.355 16.084 -2.423 0.330  -7.041 C6     GNP 26 
GNP O6     O6   O 0 1 N N N 16.242 30.767 15.067 -3.453 0.902  -7.354 O6     GNP 27 
GNP N1     N1   N 0 1 Y N N 17.523 31.709 16.581 -1.794 -0.489 -7.912 N1     GNP 28 
GNP C2     C2   C 0 1 Y N N 17.576 32.330 17.793 -0.646 -1.129 -7.549 C2     GNP 29 
GNP N2     N2   N 0 1 N N N 18.953 32.527 18.141 -0.033 -1.960 -8.453 N2     GNP 30 
GNP N3     N3   N 0 1 Y N N 16.717 32.788 18.612 -0.107 -0.968 -6.361 N3     GNP 31 
GNP C4     C4   C 0 1 Y N N 15.526 32.598 18.035 -0.670 -0.168 -5.449 C4     GNP 32 
GNP HOG2   2HOG H 0 0 N N N 4.151  31.939 19.850 -2.127 -0.645 9.083  HOG2   GNP 33 
GNP HOG3   3HOG H 0 0 N N N 4.578  29.672 20.790 0.579  -1.147 7.860  HOG3   GNP 34 
GNP HNB3   3HNB H 0 0 N N N 7.146  31.125 21.968 -2.175 -0.988 5.353  HNB3   GNP 35 
GNP HOB2   2HOB H 0 0 N N N 6.758  31.939 17.882 1.553  -1.004 5.362  HOB2   GNP 36 
GNP HOA2   2HOA H 0 0 N N N 8.842  35.314 19.885 2.543  -0.764 3.004  HOA2   GNP 37 
GNP "H5'2" 2H5* H 0 0 N N N 10.312 33.778 21.868 1.265  1.326  0.058  "H5'2" GNP 38 
GNP "H5'1" 1H5* H 0 0 N N N 10.833 32.198 21.586 2.673  0.356  0.551  "H5'1" GNP 39 
GNP "H4'"  H4*  H 0 1 N N N 12.560 33.493 22.483 2.251  -1.216 -1.329 "H4'"  GNP 40 
GNP "H3'"  H3*  H 0 1 N N N 11.732 35.763 21.003 2.652  1.744  -1.793 "H3'"  GNP 41 
GNP "HO3'" *HO3 H 0 0 N N N 13.762 36.688 21.539 4.505  0.889  -2.833 "HO3'" GNP 42 
GNP "H2'"  H2*  H 0 1 N N N 12.500 34.887 18.730 1.639  1.686  -3.871 "H2'"  GNP 43 
GNP "HO2'" *HO2 H 0 0 N N N 14.436 35.926 18.297 3.651  0.810  -4.606 "HO2'" GNP 44 
GNP "H1'"  H1*  H 0 1 N N N 15.102 34.070 20.230 1.087  -1.281 -3.708 "H1'"  GNP 45 
GNP H8     H8   H 0 1 N N N 12.203 32.779 17.728 -1.341 1.509  -2.752 H8     GNP 46 
GNP HN1    HN1  H 0 1 N N N 18.375 31.513 16.056 -2.166 -0.630 -8.797 HN1    GNP 47 
GNP HN21   1HN2 H 0 0 N N N 18.992 32.991 19.048 0.786  -2.419 -8.210 HN21   GNP 48 
GNP HN22   2HN2 H 0 0 N N N 19.471 33.029 17.420 -0.421 -2.092 -9.332 HN22   GNP 49 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
GNP PG    O1G    DOUB N N 1  
GNP PG    O2G    SING N N 2  
GNP PG    O3G    SING N N 3  
GNP PG    N3B    SING N N 4  
GNP O2G   HOG2   SING N N 5  
GNP O3G   HOG3   SING N N 6  
GNP N3B   PB     SING N N 7  
GNP N3B   HNB3   SING N N 8  
GNP PB    O1B    DOUB N N 9  
GNP PB    O2B    SING N N 10 
GNP PB    O3A    SING N N 11 
GNP O2B   HOB2   SING N N 12 
GNP O3A   PA     SING N N 13 
GNP PA    O1A    DOUB N N 14 
GNP PA    O2A    SING N N 15 
GNP PA    "O5'"  SING N N 16 
GNP O2A   HOA2   SING N N 17 
GNP "O5'" "C5'"  SING N N 18 
GNP "C5'" "C4'"  SING N N 19 
GNP "C5'" "H5'2" SING N N 20 
GNP "C5'" "H5'1" SING N N 21 
GNP "C4'" "O4'"  SING N N 22 
GNP "C4'" "C3'"  SING N N 23 
GNP "C4'" "H4'"  SING N N 24 
GNP "O4'" "C1'"  SING N N 25 
GNP "C3'" "O3'"  SING N N 26 
GNP "C3'" "C2'"  SING N N 27 
GNP "C3'" "H3'"  SING N N 28 
GNP "O3'" "HO3'" SING N N 29 
GNP "C2'" "O2'"  SING N N 30 
GNP "C2'" "C1'"  SING N N 31 
GNP "C2'" "H2'"  SING N N 32 
GNP "O2'" "HO2'" SING N N 33 
GNP "C1'" N9     SING N N 34 
GNP "C1'" "H1'"  SING N N 35 
GNP N9    C8     SING Y N 36 
GNP N9    C4     SING Y N 37 
GNP C8    N7     DOUB Y N 38 
GNP C8    H8     SING N N 39 
GNP N7    C5     SING Y N 40 
GNP C5    C6     SING Y N 41 
GNP C5    C4     DOUB Y N 42 
GNP C6    O6     DOUB N N 43 
GNP C6    N1     SING Y N 44 
GNP N1    C2     SING Y N 45 
GNP N1    HN1    SING N N 46 
GNP C2    N2     SING N N 47 
GNP C2    N3     DOUB Y N 48 
GNP N2    HN21   SING N N 49 
GNP N2    HN22   SING N N 50 
GNP N3    C4     SING Y N 51 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
GNP SMILES           ACDLabs              10.04 "O=P(O)(O)NP(=O)(O)OP(=O)(O)OCC3OC(n2cnc1c2N=C(N)NC1=O)C(O)C3O" 
GNP SMILES_CANONICAL CACTVS               3.341 "NC1=Nc2n(cnc2C(=O)N1)[C@@H]3O[C@H](CO[P@@](O)(=O)O[P@@](O)(=O)N[P](O)(O)=O)[C@@H](O)[C@H]3O" 
GNP SMILES           CACTVS               3.341 "NC1=Nc2n(cnc2C(=O)N1)[CH]3O[CH](CO[P](O)(=O)O[P](O)(=O)N[P](O)(O)=O)[CH](O)[CH]3O" 
GNP SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "c1nc2c(n1[C@H]3[C@@H]([C@@H]([C@H](O3)CO[P@](=O)(O)O[P@@](=O)(NP(=O)(O)O)O)O)O)N=C(NC2=O)N" 
GNP SMILES           "OpenEye OEToolkits" 1.5.0 "c1nc2c(n1C3C(C(C(O3)COP(=O)(O)OP(=O)(NP(=O)(O)O)O)O)O)N=C(NC2=O)N" 
GNP InChI            InChI                1.03  
"InChI=1S/C10H17N6O13P3/c11-10-13-7-4(8(19)14-10)12-2-16(7)9-6(18)5(17)3(28-9)1-27-32(25,26)29-31(23,24)15-30(20,21)22/h2-3,5-6,9,17-18H,1H2,(H,25,26)(H3,11,13,14,19)(H4,15,20,21,22,23,24)/t3-,5-,6-,9-/m1/s1" 
GNP InChIKey         InChI                1.03  UQABYHGXWYXDTK-UUOKFMHZSA-N 
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
GNP "SYSTEMATIC NAME" ACDLabs              10.04 "5'-O-[(S)-hydroxy{[(R)-hydroxy(phosphonoamino)phosphoryl]oxy}phosphoryl]guanosine"                                                                   
GNP "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "[[[[(2R,3S,4R,5R)-5-(2-amino-6-oxo-1H-purin-9-yl)-3,4-dihydroxy-oxolan-2-yl]methoxy-hydroxy-phosphoryl]oxy-hydroxy-phosphoryl]amino]phosphonic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
GNP "Create component"  1999-07-08 RCSB 
GNP "Modify descriptor" 2011-06-04 RCSB 
# 
