data_O6P
#

_chem_comp.id                                   O6P
_chem_comp.name                                 Doripenem
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAD
_chem_comp.formula                              "C15 H24 N4 O6 S2"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        
;(4R,5S,6S)-6-[(1R)-1-hydroxyethyl]-4-methyl-7-oxo-3-({(3S,5S)-5-[(sulfamoylamino)methyl]pyrrolidin-3-yl}sulfanyl)-1-aza
bicyclo[3.2.0]hept-2-ene-2-carboxylic acid
;

_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2019-06-12
_chem_comp.pdbx_modified_date                   2020-06-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       420.504
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    O6P
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       6P9C
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
O6P  C1   C1   C  0  1  N  N  R  22.462  -35.080  -19.166   2.614   1.238  -0.190  C1   O6P   1  
O6P  C2   C2   C  0  1  N  N  N  21.171  -35.822  -18.898   1.892  -0.054  -0.498  C2   O6P   2  
O6P  C3   C3   C  0  1  N  N  N  20.379  -35.805  -19.972   2.534  -1.067   0.114  C3   O6P   3  
O6P  C5   C4   C  0  1  N  N  S  22.412  -34.733  -20.662   3.759   0.827   0.748  C5   O6P   4  
O6P  C6   C5   C  0  1  N  N  S  22.033  -33.301  -21.126   5.114   0.649   0.051  C6   O6P   5  
O6P  C10  C6   C  0  1  N  N  N  22.567  -33.828  -18.301   3.172   1.856  -1.474  C10  O6P   6  
O6P  C11  C7   C  0  1  N  N  N  19.118  -36.529  -20.214   2.110  -2.416   0.047  C11  O6P   7  
O6P  C17  C8   C  0  1  N  N  S  22.164  -37.504  -16.877  -0.732   0.722  -0.481  C17  O6P   8  
O6P  C18  C9   C  0  1  N  N  N  22.479  -38.635  -17.852  -1.221  -0.122   0.722  C18  O6P   9  
O6P  C20  C10  C  0  1  N  N  S  21.857  -39.700  -15.825  -3.096   1.112  -0.120  C20  O6P  10  
O6P  C21  C11  C  0  1  N  N  N  21.800  -38.195  -15.569  -2.057   0.965  -1.252  C21  O6P  11  
O6P  C22  C12  C  0  1  N  N  N  20.665  -40.415  -15.183  -4.408   0.438  -0.528  C22  O6P  12  
O6P  C7   C13  C  0  1  N  N  N  20.676  -33.844  -21.433   4.917  -0.840   0.249  C7   O6P  13  
O6P  C8   C14  C  0  1  N  N  R  22.723  -32.755  -22.376   6.292   1.226   0.839  C8   O6P  14  
O6P  C9   C15  C  0  1  N  N  N  24.224  -33.008  -22.322   7.588   0.996   0.060  C9   O6P  15  
O6P  N19  N1   N  0  1  N  N  N  21.840  -39.847  -17.295  -2.540   0.446   1.072  N19  O6P  16  
O6P  N23  N2   N  0  1  N  N  N  20.163  -41.425  -16.142  -5.347   0.478   0.596  N23  O6P  17  
O6P  N27  N3   N  0  1  N  N  N  18.977  -43.738  -16.352  -7.077  -1.413  -0.138  N27  O6P  18  
O6P  N4   N4   N  0  1  N  N  N  20.982  -34.933  -20.761   3.670  -0.645   0.823  N4   O6P  19  
O6P  O12  O1   O  0  1  N  N  N  19.737  -33.399  -22.075   5.590  -1.820   0.009  O12  O6P  20  
O6P  O13  O2   O  0  1  N  N  N  22.180  -33.330  -23.577   6.094   2.628   1.033  O13  O6P  21  
O6P  O14  O3   O  0  1  N  N  N  18.418  -36.919  -19.242   1.074  -2.759  -0.747  O14  O6P  22  
O6P  O15  O4   O  0  1  N  N  N  18.745  -36.725  -21.390   2.680  -3.266   0.706  O15  O6P  23  
O6P  O25  O5   O  0  1  N  N  N  17.677  -41.756  -15.682  -7.582   0.248   1.615  O25  O6P  24  
O6P  O26  O6   O  0  1  N  N  N  19.184  -42.576  -14.133  -7.346   0.957  -0.770  O26  O6P  25  
O6P  S16  S1   S  0  1  N  N  N  20.789  -36.534  -17.430   0.445  -0.208  -1.492  S16  O6P  26  
O6P  S24  S2   S  0  1  N  N  N  18.976  -42.345  -15.539  -6.953   0.166   0.344  S24  O6P  27  
O6P  H1   H1   H  0  1  N  N  N  23.320  -35.740  -18.970   1.944   1.938   0.308  H1   O6P  28  
O6P  H2   H2   H  0  1  N  N  N  23.073  -35.307  -21.328   3.783   1.359   1.700  H2   O6P  29  
O6P  H3   H3   H  0  1  N  N  N  22.033  -32.581  -20.295   5.112   0.956  -0.995  H3   O6P  30  
O6P  H4   H4   H  0  1  N  N  N  22.600  -34.116  -17.240   2.348   2.203  -2.098  H4   O6P  31  
O6P  H5   H5   H  0  1  N  N  N  23.484  -33.279  -18.561   3.816   2.698  -1.221  H5   O6P  32  
O6P  H6   H6   H  0  1  N  N  N  21.692  -33.185  -18.479   3.748   1.107  -2.017  H6   O6P  33  
O6P  H7   H7   H  0  1  N  N  N  23.028  -36.835  -16.749  -0.298   1.664  -0.146  H7   O6P  34  
O6P  H8   H8   H  0  1  N  N  N  23.567  -38.779  -17.931  -1.323  -1.169   0.434  H8   O6P  35  
O6P  H9   H9   H  0  1  N  N  N  22.066  -38.408  -18.846  -0.530  -0.024   1.560  H9   O6P  36  
O6P  H10  H10  H  0  1  N  N  N  22.793  -40.107  -15.414  -3.270   2.167   0.088  H10  O6P  37  
O6P  H11  H11  H  0  1  N  N  N  22.519  -37.918  -14.783  -1.997   1.879  -1.842  H11  O6P  38  
O6P  H12  H12  H  0  1  N  N  N  20.786  -37.903  -15.258  -2.295   0.111  -1.886  H12  O6P  39  
O6P  H13  H13  H  0  1  N  N  N  19.871  -39.688  -14.958  -4.838   0.965  -1.380  H13  O6P  40  
O6P  H14  H14  H  0  1  N  N  N  20.983  -40.909  -14.253  -4.214  -0.599  -0.803  H14  O6P  41  
O6P  H15  H15  H  0  1  N  N  N  22.565  -31.667  -22.398   6.358   0.731   1.808  H15  O6P  42  
O6P  H16  H16  H  0  1  N  N  N  24.638  -32.568  -21.403   7.522   1.490  -0.909  H16  O6P  43  
O6P  H17  H17  H  0  1  N  N  N  24.413  -34.092  -22.327   8.427   1.407   0.621  H17  O6P  44  
O6P  H18  H18  H  0  1  N  N  N  24.705  -32.548  -23.198   7.739  -0.074  -0.087  H18  O6P  45  
O6P  H19  H19  H  0  1  N  N  N  20.898  -39.921  -17.623  -3.164  -0.270   1.411  H19  O6P  46  
O6P  H21  H21  H  0  1  N  N  N  20.923  -42.019  -16.404  -5.027   0.687   1.488  H21  O6P  47  
O6P  H22  H22  H  0  1  N  N  N  18.252  -44.330  -16.001  -7.875  -1.923   0.071  H22  O6P  48  
O6P  H23  H23  H  0  1  N  N  N  18.819  -43.557  -17.323  -6.351  -1.828  -0.630  H23  O6P  49  
O6P  H24  H24  H  0  1  N  N  N  21.257  -33.517  -23.450   6.026   3.132   0.211  H24  O6P  50  
O6P  H25  H25  H  0  1  N  N  N  17.634  -37.346  -19.567   0.906  -3.711  -0.786  H25  O6P  51  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
O6P  O13  C8   SING  N  N   1  
O6P  C8   C9   SING  N  N   2  
O6P  C8   C6   SING  N  N   3  
O6P  O12  C7   DOUB  N  N   4  
O6P  C7   C6   SING  N  N   5  
O6P  C7   N4   SING  N  N   6  
O6P  O15  C11  DOUB  N  N   7  
O6P  C6   C5   SING  N  N   8  
O6P  N4   C5   SING  N  N   9  
O6P  N4   C3   SING  N  N  10  
O6P  C5   C1   SING  N  N  11  
O6P  C11  C3   SING  N  N  12  
O6P  C11  O14  SING  N  N  13  
O6P  C3   C2   DOUB  N  N  14  
O6P  C1   C2   SING  N  N  15  
O6P  C1   C10  SING  N  N  16  
O6P  C2   S16  SING  N  N  17  
O6P  C18  N19  SING  N  N  18  
O6P  C18  C17  SING  N  N  19  
O6P  S16  C17  SING  N  N  20  
O6P  N19  C20  SING  N  N  21  
O6P  C17  C21  SING  N  N  22  
O6P  N27  S24  SING  N  N  23  
O6P  N23  S24  SING  N  N  24  
O6P  N23  C22  SING  N  N  25  
O6P  C20  C21  SING  N  N  26  
O6P  C20  C22  SING  N  N  27  
O6P  O25  S24  DOUB  N  N  28  
O6P  S24  O26  DOUB  N  N  29  
O6P  C1   H1   SING  N  N  30  
O6P  C5   H2   SING  N  N  31  
O6P  C6   H3   SING  N  N  32  
O6P  C10  H4   SING  N  N  33  
O6P  C10  H5   SING  N  N  34  
O6P  C10  H6   SING  N  N  35  
O6P  C17  H7   SING  N  N  36  
O6P  C18  H8   SING  N  N  37  
O6P  C18  H9   SING  N  N  38  
O6P  C20  H10  SING  N  N  39  
O6P  C21  H11  SING  N  N  40  
O6P  C21  H12  SING  N  N  41  
O6P  C22  H13  SING  N  N  42  
O6P  C22  H14  SING  N  N  43  
O6P  C8   H15  SING  N  N  44  
O6P  C9   H16  SING  N  N  45  
O6P  C9   H17  SING  N  N  46  
O6P  C9   H18  SING  N  N  47  
O6P  N19  H19  SING  N  N  48  
O6P  N23  H21  SING  N  N  49  
O6P  N27  H22  SING  N  N  50  
O6P  N27  H23  SING  N  N  51  
O6P  O13  H24  SING  N  N  52  
O6P  O14  H25  SING  N  N  53  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
O6P  SMILES            ACDLabs               12.01  "C2(C(SC1CC(CNS(N)(=O)=O)NC1)=C(C(O)=O)N3C2C(C3=O)C(C)O)C"  
O6P  InChI             InChI                 1.03   "InChI=1S/C15H24N4O6S2/c1-6-11-10(7(2)20)14(21)19(11)12(15(22)23)13(6)26-9-3-8(17-5-9)4-18-27(16,24)25/h6-11,17-18,20H,3-5H2,1-2H3,(H,22,23)(H2,16,24,25)/t6-,7-,8+,9+,10-,11-/m1/s1"  
O6P  InChIKey          InChI                 1.03   AVAACINZEOAHHE-VFZPANTDSA-N  
O6P  SMILES_CANONICAL  CACTVS                3.385  "C[C@@H](O)[C@@H]1[C@H]2[C@@H](C)C(=C(N2C1=O)C(O)=O)S[C@@H]3CN[C@H](CN[S](N)(=O)=O)C3"  
O6P  SMILES            CACTVS                3.385  "C[CH](O)[CH]1[CH]2[CH](C)C(=C(N2C1=O)C(O)=O)S[CH]3CN[CH](CN[S](N)(=O)=O)C3"  
O6P  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "C[C@@H]1[C@@H]2[C@H](C(=O)N2C(=C1S[C@H]3C[C@H](NC3)CNS(=O)(=O)N)C(=O)O)[C@@H](C)O"  
O6P  SMILES            "OpenEye OEToolkits"  2.0.7  "CC1C2C(C(=O)N2C(=C1SC3CC(NC3)CNS(=O)(=O)N)C(=O)O)C(C)O"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
O6P  "SYSTEMATIC NAME"  ACDLabs               12.01  "(4R,5S,6S)-6-[(1R)-1-hydroxyethyl]-4-methyl-7-oxo-3-({(3S,5S)-5-[(sulfamoylamino)methyl]pyrrolidin-3-yl}sulfanyl)-1-azabicyclo[3.2.0]hept-2-ene-2-carboxylic acid"  
O6P  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.7  "(4~{R},5~{S},6~{S})-4-methyl-6-[(1~{R})-1-oxidanylethyl]-7-oxidanylidene-3-[(3~{S},5~{S})-5-[(sulfamoylamino)methyl]pyrrolidin-3-yl]sulfanyl-1-azabicyclo[3.2.0]hept-2-ene-2-carboxylic acid"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
O6P  "Create component"  2019-06-12  RCSB  
O6P  "Initial release"   2019-08-07  RCSB  
O6P  "Modify synonyms"   2020-06-05  PDBE  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     O6P
_pdbx_chem_comp_synonyms.name        "(4R,5S,6S)-6-[(1R)-1-hydroxyethyl]-4-methyl-7-oxo-3-({(3S,5S)-5-[(sulfamoylamino)methyl]pyrrolidin-3-yl}sulfanyl)-1-azabicyclo[3.2.0]hept-2-ene-2-carboxylic acid"
_pdbx_chem_comp_synonyms.provenance  ?
_pdbx_chem_comp_synonyms.type        ?
##
