data_UVP
#

_chem_comp.id                                   UVP
_chem_comp.name                                 "1-[(5E)-5,6-dideoxy-2-O-methyl-6-phosphono-beta-D-ribo-hex-5-enofuranosyl]-2,4-dihydroxypyrimidin-1-ium"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C11 H16 N2 O8 P"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        "uridine vinyl phosphonate"
_chem_comp.pdbx_formal_charge                   1
_chem_comp.pdbx_initial_date                    2016-11-15
_chem_comp.pdbx_modified_date                   2021-03-01
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       335.227
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    UVP
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       5T7B
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
UVP  OP     O1   O  0  1  N  N  N  42.517  44.337  100.560   4.858  -1.779  -0.965  OP     UVP   1  
UVP  P      P1   P  0  1  N  N  N  42.165  43.416  101.821   4.236  -0.980   0.115  P      UVP   2  
UVP  OP1    O2   O  0  1  N  N  N  42.368  41.940  101.246   4.062  -1.895   1.428  OP1    UVP   3  
UVP  OP2    O3   O  0  1  N  N  N  40.736  43.595  102.126   5.177   0.280   0.460  OP2    UVP   4  
UVP  "C6'"  C1   C  0  1  N  N  N  43.385  43.690  103.129   2.610  -0.389  -0.430  "C6'"  UVP   5  
UVP  "C5'"  C2   C  0  1  N  N  N  44.721  42.977  102.937   2.367   0.897  -0.490  "C5'"  UVP   6  
UVP  "C4'"  C3   C  0  1  N  N  R  45.738  43.208  104.053   1.016   1.388  -0.942  "C4'"  UVP   7  
UVP  "O4'"  O4   O  0  1  N  N  N  45.654  42.139  104.999   0.122   0.275  -1.108  "O4'"  UVP   8  
UVP  "C3'"  C4   C  0  1  N  N  R  47.167  43.116  103.512   0.406   2.310   0.132  "C3'"  UVP   9  
UVP  "O3'"  O5   O  0  1  N  N  N  47.744  44.430  103.516   0.171   3.614  -0.403  "O3'"  UVP  10  
UVP  "C2'"  C5   C  0  1  N  N  R  47.810  42.208  104.556  -0.932   1.626   0.503  "C2'"  UVP  11  
UVP  "O2'"  O6   O  0  1  N  N  N  49.154  42.626  104.887  -1.971   2.594   0.665  "O2'"  UVP  12  
UVP  "CB'"  C6   C  0  1  N  N  N  49.996  41.488  105.089  -2.118   3.069   2.005  "CB'"  UVP  13  
UVP  "C1'"  C7   C  0  1  N  N  R  46.858  42.332  105.723  -1.196   0.735  -0.737  "C1'"  UVP  14  
UVP  N1     N1   N  1  1  Y  N  N  46.973  41.176  106.630  -2.056  -0.398  -0.384  N1     UVP  15  
UVP  C2     C8   C  0  1  Y  N  N  47.778  41.198  107.704  -3.371  -0.270  -0.471  C2     UVP  16  
UVP  O2     O7   O  0  1  N  N  N  48.437  42.205  107.962  -3.894   0.909  -0.886  O2     UVP  17  
UVP  N3     N2   N  0  1  Y  N  N  47.861  40.069  108.536  -4.187  -1.265  -0.164  N3     UVP  18  
UVP  C4     C9   C  0  1  Y  N  N  47.114  38.917  108.252  -3.706  -2.433   0.244  C4     UVP  19  
UVP  O4     O8   O  0  1  N  N  N  47.182  37.926  108.976  -4.545  -3.450   0.558  O4     UVP  20  
UVP  C5     C10  C  0  1  Y  N  N  46.289  38.899  107.140  -2.326  -2.599   0.347  C5     UVP  21  
UVP  C6     C11  C  0  1  Y  N  N  46.223  40.026  106.333  -1.508  -1.536   0.012  C6     UVP  22  
UVP  H1     H1   H  0  1  N  N  N  42.636  41.988  100.336   4.893  -2.247   1.775  H1     UVP  23  
UVP  H2     H2   H  0  1  N  N  N  40.355  44.210  101.510   4.831   0.849   1.161  H2     UVP  24  
UVP  H3     H3   H  0  1  N  N  N  43.182  44.315  103.986   1.843  -1.097  -0.706  H3     UVP  25  
UVP  H5     H5   H  0  1  N  N  N  44.931  42.357  102.078   3.134   1.605  -0.214  H5     UVP  26  
UVP  H7     H7   H  0  1  N  N  N  45.571  44.187  104.526   1.115   1.928  -1.884  H7     UVP  27  
UVP  H8     H8   H  0  1  N  N  N  47.184  42.650  102.516   1.061   2.368   1.001  H8     UVP  28  
UVP  H9     H9   H  0  1  N  N  N  48.632  44.387  103.182   0.970   4.065  -0.706  H9     UVP  29  
UVP  H10    H10  H  0  1  N  N  N  47.809  41.171  104.188  -0.823   1.020   1.402  H10    UVP  30  
UVP  H11    H11  H  0  1  N  N  N  51.013  41.824  105.340  -2.352   2.233   2.664  H11    UVP  31  
UVP  H12    H12  H  0  1  N  N  N  49.597  40.879  105.914  -1.189   3.538   2.328  H12    UVP  32  
UVP  H13    H13  H  0  1  N  N  N  50.025  40.886  104.169  -2.926   3.800   2.045  H13    UVP  33  
UVP  H14    H14  H  0  1  N  N  N  46.932  43.302  106.236  -1.640   1.319  -1.543  H14    UVP  34  
UVP  H16    H16  H  0  1  N  N  N  45.706  38.021  106.904  -1.905  -3.537   0.677  H16    UVP  35  
UVP  H17    H17  H  0  1  N  N  N  45.584  40.019  105.462  -0.434  -1.632   0.075  H17    UVP  36  
UVP  H4     H4   H  0  1  N  N  N  48.946  42.057  108.750  -4.017   0.970  -1.843  H4     UVP  37  
UVP  H6     H6   H  0  1  N  N  N  47.785  38.096  109.690  -4.760  -4.027  -0.189  H6     UVP  38  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
UVP  OP     P      DOUB  N  N   1  
UVP  OP1    P      SING  N  N   2  
UVP  P      OP2    SING  N  N   3  
UVP  P      "C6'"  SING  N  N   4  
UVP  "C5'"  "C6'"  DOUB  N  E   5  
UVP  "C5'"  "C4'"  SING  N  N   6  
UVP  "C3'"  "O3'"  SING  N  N   7  
UVP  "C3'"  "C4'"  SING  N  N   8  
UVP  "C3'"  "C2'"  SING  N  N   9  
UVP  "C4'"  "O4'"  SING  N  N  10  
UVP  "C2'"  "O2'"  SING  N  N  11  
UVP  "C2'"  "C1'"  SING  N  N  12  
UVP  "O2'"  "CB'"  SING  N  N  13  
UVP  "O4'"  "C1'"  SING  N  N  14  
UVP  "C1'"  N1     SING  N  N  15  
UVP  C6     N1     DOUB  Y  N  16  
UVP  C6     C5     SING  Y  N  17  
UVP  N1     C2     SING  Y  N  18  
UVP  C5     C4     DOUB  Y  N  19  
UVP  C2     O2     SING  N  N  20  
UVP  C2     N3     DOUB  Y  N  21  
UVP  C4     N3     SING  Y  N  22  
UVP  C4     O4     SING  N  N  23  
UVP  OP1    H1     SING  N  N  24  
UVP  OP2    H2     SING  N  N  25  
UVP  "C6'"  H3     SING  N  N  26  
UVP  "C5'"  H5     SING  N  N  27  
UVP  "C4'"  H7     SING  N  N  28  
UVP  "C3'"  H8     SING  N  N  29  
UVP  "O3'"  H9     SING  N  N  30  
UVP  "C2'"  H10    SING  N  N  31  
UVP  "CB'"  H11    SING  N  N  32  
UVP  "CB'"  H12    SING  N  N  33  
UVP  "CB'"  H13    SING  N  N  34  
UVP  "C1'"  H14    SING  N  N  35  
UVP  C5     H16    SING  N  N  36  
UVP  C6     H17    SING  N  N  37  
UVP  O2     H4     SING  N  N  38  
UVP  O4     H6     SING  N  N  39  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
UVP  SMILES            ACDLabs               12.01  "O=P(O)([C@H]=CC1OC(C(C1O)OC)[n+]2c(O)nc(O)cc2)O"  
UVP  InChI             InChI                 1.03   "InChI=1S/C11H15N2O8P/c1-20-9-8(15)6(3-5-22(17,18)19)21-10(9)13-4-2-7(14)12-11(13)16/h2-6,8-10,15H,1H3,(H3,12,14,16,17,18,19)/p+1/b5-3+/t6-,8-,9-,10-/m1/s1"  
UVP  InChIKey          InChI                 1.03   XBCZHNUNHZIGAE-JKXAUABFSA-O  
UVP  SMILES_CANONICAL  CACTVS                3.385  "CO[C@@H]1[C@H](O)[C@H](O[C@H]1[n+]2ccc(O)nc2O)\C=C\[P](O)(O)=O"  
UVP  SMILES            CACTVS                3.385  "CO[CH]1[CH](O)[CH](O[CH]1[n+]2ccc(O)nc2O)C=C[P](O)(O)=O"  
UVP  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.6  "CO[C@@H]1[C@@H]([C@H](O[C@H]1[n+]2ccc(nc2O)O)/C=C/P(=O)(O)O)O"  
UVP  SMILES            "OpenEye OEToolkits"  2.0.6  "COC1C(C(OC1[n+]2ccc(nc2O)O)C=CP(=O)(O)O)O"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
UVP  "SYSTEMATIC NAME"  ACDLabs               12.01  "1-[(5E)-5,6-dideoxy-2-O-methyl-6-phosphono-beta-D-ribo-hex-5-enofuranosyl]-2,4-dihydroxypyrimidin-1-ium"  
UVP  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.6  "[(~{E})-2-[(2~{R},3~{R},4~{R},5~{R})-5-[2,4-bis(oxidanyl)pyrimidin-1-ium-1-yl]-4-methoxy-3-oxidanyl-oxolan-2-yl]ethenyl]phosphonic acid"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
UVP  "Create component"  2016-11-15  RCSB  
UVP  "Initial release"   2016-12-14  RCSB  
UVP  "Modify synonyms"   2021-03-01  PDBE  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     UVP
_pdbx_chem_comp_synonyms.name        "uridine vinyl phosphonate"
_pdbx_chem_comp_synonyms.provenance  ?
_pdbx_chem_comp_synonyms.type        ?
##
