data_04Q
# 
_chem_comp.id                                    04Q 
_chem_comp.name                                  N-benzylglycine 
_chem_comp.type                                  "PEPTIDE LINKING" 
_chem_comp.pdbx_type                             ATOMP 
_chem_comp.formula                               "C9 H11 N O2" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2012-06-22 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        165.189 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     04Q 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        4AYV 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  EBI 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
04Q N    N5   N 0 1 N N N Y Y N 31.868 13.041 23.707 0.932  0.036  0.182  N5   04Q 1  
04Q C9   C9   C 0 1 N N N N N N 31.181 11.955 22.933 -0.122 0.209  1.190  C9   04Q 2  
04Q C10  C10  C 0 1 N N N Y N N 33.098 13.590 23.112 2.265  0.141  0.789  C10  04Q 3  
04Q C16  C16  C 0 1 Y N N N N N 32.127 10.819 22.731 -1.472 0.095  0.531  C16  04Q 4  
04Q C    C17  C 0 1 N N N Y N Y 32.677 14.542 21.998 3.318  -0.040 -0.274 C17  04Q 5  
04Q C21  C21  C 0 1 Y N N N N N 32.740 10.195 23.855 -2.091 -1.137 0.431  C21  04Q 6  
04Q C22  C22  C 0 1 Y N N N N N 32.415 10.404 21.439 -2.095 1.224  0.031  C22  04Q 7  
04Q OXT  O23  O 0 1 N Y N Y N Y 33.612 14.684 21.068 4.619  0.017  0.053  O23  04Q 8  
04Q O    O24  O 0 1 N N N Y N Y 31.623 15.137 21.867 2.991  -0.237 -1.420 O24  04Q 9  
04Q C28  C28  C 0 1 Y N N N N N 33.656 9.149  23.674 -3.329 -1.242 -0.174 C28  04Q 10 
04Q C29  C29  C 0 1 Y N N N N N 33.335 9.350  21.252 -3.333 1.119  -0.574 C29  04Q 11 
04Q C34  C34  C 0 1 Y N N N N N 33.959 8.722  22.353 -3.949 -0.114 -0.678 C34  04Q 12 
04Q H91C H91C H 0 0 N N N N N N 30.301 11.605 23.493 -0.024 -0.563 1.954  H91C 04Q 13 
04Q H92C H92C H 0 0 N N N N N N 30.862 12.346 21.955 -0.025 1.191  1.653  H92C 04Q 14 
04Q H101 H101 H 0 0 N N N Y N N 33.675 14.134 23.874 2.379  1.123  1.249  H101 04Q 15 
04Q H102 H102 H 0 0 N N N Y N N 33.712 12.776 22.699 2.380  -0.631 1.550  H102 04Q 16 
04Q H21  H21  H 0 1 N N N N N N 32.498 10.530 24.853 -1.606 -2.018 0.825  H21  04Q 17 
04Q H22  H22  H 0 1 N N N N N N 31.944 10.879 20.591 -1.613 2.187  0.114  H22  04Q 18 
04Q HXT  H23  H 0 1 N Y N Y N Y 33.298 15.270 20.390 5.257  -0.106 -0.663 H23  04Q 19 
04Q H28  H28  H 0 1 N N N N N N 34.124 8.676  24.525 -3.812 -2.204 -0.253 H28  04Q 20 
04Q H29  H29  H 0 1 N N N N N N 33.566 9.018  20.251 -3.820 2.001  -0.964 H29  04Q 21 
04Q H34  H34  H 0 1 N N N N N N 34.664 7.920  22.191 -4.917 -0.196 -1.151 H34  04Q 22 
04Q H    H2   H 0 1 N Y N Y Y N 31.220 13.795 23.815 0.825  -0.840 -0.307 H2   04Q 23 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
04Q N   C9   SING N N 1  
04Q N   C10  SING N N 2  
04Q C9  C16  SING N N 3  
04Q C10 C    SING N N 4  
04Q C16 C21  SING Y N 5  
04Q C16 C22  DOUB Y N 6  
04Q C   OXT  SING N N 7  
04Q C   O    DOUB N N 8  
04Q C21 C28  DOUB Y N 9  
04Q C22 C29  SING Y N 10 
04Q C28 C34  SING Y N 11 
04Q C29 C34  DOUB Y N 12 
04Q C9  H91C SING N N 13 
04Q C9  H92C SING N N 14 
04Q C10 H101 SING N N 15 
04Q C10 H102 SING N N 16 
04Q C21 H21  SING N N 17 
04Q C22 H22  SING N N 18 
04Q OXT HXT  SING N N 19 
04Q C28 H28  SING N N 20 
04Q C29 H29  SING N N 21 
04Q C34 H34  SING N N 22 
04Q N   H    SING N N 23 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
04Q SMILES           ACDLabs              12.01 "O=C(O)CNCc1ccccc1"                                                        
04Q InChI            InChI                1.03  "InChI=1S/C9H11NO2/c11-9(12)7-10-6-8-4-2-1-3-5-8/h1-5,10H,6-7H2,(H,11,12)" 
04Q InChIKey         InChI                1.03  KGSVNOLLROCJQM-UHFFFAOYSA-N                                                
04Q SMILES_CANONICAL CACTVS               3.385 "OC(=O)CNCc1ccccc1"                                                        
04Q SMILES           CACTVS               3.385 "OC(=O)CNCc1ccccc1"                                                        
04Q SMILES_CANONICAL "OpenEye OEToolkits" 1.9.2 "c1ccc(cc1)CNCC(=O)O"                                                      
04Q SMILES           "OpenEye OEToolkits" 1.9.2 "c1ccc(cc1)CNCC(=O)O"                                                      
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
04Q "SYSTEMATIC NAME" ACDLabs              12.01 N-benzylglycine                        
04Q "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.9.2 "2-[(phenylmethyl)amino]ethanoic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
04Q "Create component"    2012-06-22 EBI  
04Q "Modify descriptor"   2014-09-05 RCSB 
04Q "Modify linking type" 2022-06-23 RCSB 
04Q "Modify backbone"     2023-11-03 PDBE 
04Q "Modify PCM"          2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            04Q 
_pdbx_chem_comp_pcm.modified_residue_id                GLY 
_pdbx_chem_comp_pcm.type                               Benzylation 
_pdbx_chem_comp_pcm.category                           "Named protein modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid backbone" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               ? 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   ? 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
