data_47Q
# 
_chem_comp.id                                    47Q 
_chem_comp.name                                  "5-[(pyridin-2-ylmethyl)amino]-1,3-dihydro-2H-benzimidazol-2-one" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C13 H12 N4 O" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2015-02-11 
_chem_comp.pdbx_modified_date                    2016-02-26 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        240.261 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     47Q 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        4Y4X 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  EBI 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
47Q C4  C1  C 0 1 Y N N -6.679 -0.952 6.907  0.359  0.145  -0.007 C4  47Q 1  
47Q C5  C2  C 0 1 N N N -7.988 -2.587 8.248  -1.998 0.915  -0.063 C5  47Q 2  
47Q C6  C3  C 0 1 Y N N -7.568 -1.998 9.574  -3.384 0.324  -0.024 C6  47Q 3  
47Q N1  N1  N 0 1 N N N -7.821 -1.703 7.105  -1.006 -0.160 0.012  N1  47Q 4  
47Q C7  C4  C 0 1 Y N N -7.662 -0.639 9.840  -4.054 0.234  1.181  C7  47Q 5  
47Q C8  C5  C 0 1 Y N N -7.253 -0.176 11.077 -5.329 -0.311 1.205  C8  47Q 6  
47Q N2  N2  N 0 1 Y N N -7.102 -2.874 10.475 -3.944 -0.096 -1.142 N2  47Q 7  
47Q C9  C6  C 0 1 Y N N -6.780 -1.063 12.010 -5.883 -0.748 0.012  C9  47Q 8  
47Q C10 C7  C 0 1 Y N N -6.723 -2.394 11.669 -5.154 -0.620 -1.156 C10 47Q 9  
47Q C11 C8  C 0 1 Y N N -6.781 0.348  6.415  1.298  -0.875 0.058  C11 47Q 10 
47Q C12 C9  C 0 1 Y N N -5.621 1.092  6.252  2.649  -0.570 0.039  C12 47Q 11 
47Q N3  N3  N 0 1 N N N -5.379 2.362  5.748  3.804  -1.347 0.089  N3  47Q 12 
47Q O   O1  O 0 1 N N N -3.480 3.628  5.284  6.033  -0.887 0.061  O   47Q 13 
47Q C   C10 C 0 1 N N N -4.036 2.637  5.740  4.871  -0.527 0.037  C   47Q 14 
47Q C1  C11 C 0 1 Y N N -4.389 0.557  6.583  3.062  0.762  -0.045 C1  47Q 15 
47Q N   N4  N 0 1 N N N -3.441 1.513  6.272  4.457  0.751  -0.044 N   47Q 16 
47Q C3  C12 C 0 1 Y N N -5.432 -1.486 7.228  0.773  1.469  -0.097 C3  47Q 17 
47Q C2  C13 C 0 1 Y N N -4.280 -0.733 7.077  2.119  1.776  -0.110 C2  47Q 18 
47Q H1  H1  H 0 1 N N N -9.051 -2.860 8.317  -1.865 1.468  -0.993 H1  47Q 19 
47Q H2  H2  H 0 1 N N N -7.388 -3.492 8.071  -1.867 1.590  0.783  H2  47Q 20 
47Q H3  H3  H 0 1 N N N -8.578 -1.051 7.145  -1.296 -1.084 0.075  H3  47Q 21 
47Q H4  H4  H 0 1 N N N -8.047 0.043  9.096  -3.592 0.584  2.091  H4  47Q 22 
47Q H5  H5  H 0 1 N N N -7.306 0.878  11.307 -5.877 -0.395 2.132  H5  47Q 23 
47Q H6  H6  H 0 1 N N N -6.461 -0.726 12.985 -6.874 -1.178 -0.006 H6  47Q 24 
47Q H7  H7  H 0 1 N N N -6.352 -3.093 12.404 -5.581 -0.953 -2.091 H7  47Q 25 
47Q H8  H8  H 0 1 N N N -7.744 0.768  6.165  0.975  -1.904 0.124  H8  47Q 26 
47Q H9  H9  H 0 1 N N N -6.089 2.992  5.433  3.835  -2.314 0.151  H9  47Q 27 
47Q H10 H10 H 0 1 N N N -2.457 1.404  6.414  5.031  1.532  -0.094 H10 47Q 28 
47Q H11 H11 H 0 1 N N N -5.364 -2.498 7.599  0.040  2.259  -0.153 H11 47Q 29 
47Q H12 H12 H 0 1 N N N -3.316 -1.143 7.339  2.438  2.806  -0.175 H12 47Q 30 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
47Q O   C   DOUB N N 1  
47Q C   N3  SING N N 2  
47Q C   N   SING N N 3  
47Q N3  C12 SING N N 4  
47Q C12 C11 DOUB Y N 5  
47Q C12 C1  SING Y N 6  
47Q N   C1  SING N N 7  
47Q C11 C4  SING Y N 8  
47Q C1  C2  DOUB Y N 9  
47Q C4  N1  SING N N 10 
47Q C4  C3  DOUB Y N 11 
47Q C2  C3  SING Y N 12 
47Q N1  C5  SING N N 13 
47Q C5  C6  SING N N 14 
47Q C6  C7  DOUB Y N 15 
47Q C6  N2  SING Y N 16 
47Q C7  C8  SING Y N 17 
47Q N2  C10 DOUB Y N 18 
47Q C8  C9  DOUB Y N 19 
47Q C10 C9  SING Y N 20 
47Q C5  H1  SING N N 21 
47Q C5  H2  SING N N 22 
47Q N1  H3  SING N N 23 
47Q C7  H4  SING N N 24 
47Q C8  H5  SING N N 25 
47Q C9  H6  SING N N 26 
47Q C10 H7  SING N N 27 
47Q C11 H8  SING N N 28 
47Q N3  H9  SING N N 29 
47Q N   H10 SING N N 30 
47Q C3  H11 SING N N 31 
47Q C2  H12 SING N N 32 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
47Q SMILES           ACDLabs              12.01 "O=C2Nc1ccc(cc1N2)NCc3ncccc3"                                                                          
47Q InChI            InChI                1.03  "InChI=1S/C13H12N4O/c18-13-16-11-5-4-9(7-12(11)17-13)15-8-10-3-1-2-6-14-10/h1-7,15H,8H2,(H2,16,17,18)" 
47Q InChIKey         InChI                1.03  MRKXGDLFRQWMOW-UHFFFAOYSA-N                                                                            
47Q SMILES_CANONICAL CACTVS               3.385 "O=C1Nc2ccc(NCc3ccccn3)cc2N1"                                                                          
47Q SMILES           CACTVS               3.385 "O=C1Nc2ccc(NCc3ccccn3)cc2N1"                                                                          
47Q SMILES_CANONICAL "OpenEye OEToolkits" 1.9.2 "c1ccnc(c1)CNc2ccc3c(c2)NC(=O)N3"                                                                      
47Q SMILES           "OpenEye OEToolkits" 1.9.2 "c1ccnc(c1)CNc2ccc3c(c2)NC(=O)N3"                                                                      
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
47Q "SYSTEMATIC NAME" ACDLabs              12.01 "5-[(pyridin-2-ylmethyl)amino]-1,3-dihydro-2H-benzimidazol-2-one" 
47Q "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.9.2 "5-(pyridin-2-ylmethylamino)-1,3-dihydrobenzimidazol-2-one"       
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
47Q "Create component" 2015-02-11 EBI  
47Q "Initial release"  2016-03-02 RCSB 
# 
