data_VPQ
# 
_chem_comp.id                                    VPQ 
_chem_comp.name                                  "(2~{R},3~{S},4~{S},5~{S},6~{R})-6-(hydroxymethyl)-3,4,5-tris(oxidanyl)oxane-2-carboxamide" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C7 H13 N O6" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-03-24 
_chem_comp.pdbx_modified_date                    2023-09-08 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        207.181 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     VPQ 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8OJM 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
VPQ O7    O1  O 0 1 N N N 21.923 39.938 35.734 -2.588 1.551  -0.632 O7    VPQ 1  
VPQ "C5'" C1  C 0 1 N N R 24.240 40.993 32.571 1.253  0.740  0.309  "C5'" VPQ 2  
VPQ "C4'" C2  C 0 1 N N S 23.729 40.398 31.255 1.574  -0.680 -0.166 "C4'" VPQ 3  
VPQ "C3'" C3  C 0 1 N N S 23.461 38.906 31.423 0.584  -1.659 0.472  "C3'" VPQ 4  
VPQ "C2'" C4  C 0 1 N N S 22.600 38.618 32.650 -0.843 -1.234 0.111  "C2'" VPQ 5  
VPQ "C1'" C5  C 0 1 N N R 23.265 39.260 33.876 -1.070 0.207  0.576  "C1'" VPQ 6  
VPQ "O5'" O2  O 0 1 N N N 23.333 40.671 33.644 -0.097 1.061  -0.030 "O5'" VPQ 7  
VPQ "C6'" C6  C 0 1 N N N 24.360 42.502 32.523 2.200  1.732  -0.370 "C6'" VPQ 8  
VPQ "O6'" O3  O 0 1 N N N 23.064 43.085 32.401 1.978  3.040  0.159  "O6'" VPQ 9  
VPQ "O4'" O4  O 0 1 N N N 24.777 40.547 30.311 2.905  -1.025 0.223  "O4'" VPQ 10 
VPQ "O3'" O5  O 0 1 N N N 22.902 38.354 30.234 0.829  -2.977 -0.024 "O3'" VPQ 11 
VPQ C7    C7  C 0 1 N N N 22.452 39.042 35.130 -2.452 0.653  0.172  C7    VPQ 12 
VPQ N1    N1  N 0 1 N N N 22.329 37.703 35.626 -3.536 0.055  0.705  N1    VPQ 13 
VPQ O1    O6  O 0 1 N Y N 20.874 39.211 32.498 -1.021 -1.313 -1.305 O1    VPQ 14 
VPQ H1    H1  H 0 1 N N N 25.232 40.567 32.784 1.380  0.798  1.390  H1    VPQ 15 
VPQ H2    H2  H 0 1 N N N 22.813 40.916 30.935 1.486  -0.729 -1.252 H2    VPQ 16 
VPQ H3    H3  H 0 1 N N N 24.435 38.425 31.597 0.705  -1.647 1.555  H3    VPQ 17 
VPQ H4    H4  H 0 1 N N N 22.535 37.530 32.802 -1.556 -1.893 0.606  H4    VPQ 18 
VPQ H5    H5  H 0 1 N N N 24.272 38.836 34.008 -0.974 0.259  1.660  H5    VPQ 19 
VPQ H6    H6  H 0 1 N N N 24.974 42.792 31.658 3.232  1.435  -0.184 H6    VPQ 20 
VPQ H7    H7  H 0 1 N N N 24.836 42.860 33.448 2.011  1.737  -1.444 H7    VPQ 21 
VPQ H8    H8  H 0 1 N N N 23.143 44.031 32.371 2.545  3.722  -0.227 H8    VPQ 22 
VPQ H9    H9  H 0 1 N N N 24.964 41.470 30.188 3.174  -1.915 -0.042 H9    VPQ 23 
VPQ H10   H10 H 0 1 N N N 22.743 37.426 30.360 0.237  -3.650 0.339  H10   VPQ 24 
VPQ H11   H11 H 0 1 N N N 21.810 37.525 36.462 -3.426 -0.663 1.348  H11   VPQ 25 
VPQ H12   H12 H 0 1 N N N 22.762 36.947 35.136 -4.425 0.343  0.445  H12   VPQ 26 
VPQ H13   H13 H 0 1 N N N 20.396 39.001 33.291 -1.904 -1.057 -1.605 H13   VPQ 27 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
VPQ "O3'" "C3'" SING N N 1  
VPQ "O4'" "C4'" SING N N 2  
VPQ "C4'" "C3'" SING N N 3  
VPQ "C4'" "C5'" SING N N 4  
VPQ "C3'" "C2'" SING N N 5  
VPQ "O6'" "C6'" SING N N 6  
VPQ "C6'" "C5'" SING N N 7  
VPQ "C5'" "O5'" SING N N 8  
VPQ "C2'" "C1'" SING N N 9  
VPQ "O5'" "C1'" SING N N 10 
VPQ "C1'" C7    SING N N 11 
VPQ C7    N1    SING N N 12 
VPQ C7    O7    DOUB N N 13 
VPQ "C2'" O1    SING N N 14 
VPQ "C5'" H1    SING N N 15 
VPQ "C4'" H2    SING N N 16 
VPQ "C3'" H3    SING N N 17 
VPQ "C2'" H4    SING N N 18 
VPQ "C1'" H5    SING N N 19 
VPQ "C6'" H6    SING N N 20 
VPQ "C6'" H7    SING N N 21 
VPQ "O6'" H8    SING N N 22 
VPQ "O4'" H9    SING N N 23 
VPQ "O3'" H10   SING N N 24 
VPQ N1    H11   SING N N 25 
VPQ N1    H12   SING N N 26 
VPQ O1    H13   SING N N 27 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
VPQ InChI            InChI                1.06  "InChI=1S/C7H13NO6/c8-7(13)6-5(12)4(11)3(10)2(1-9)14-6/h2-6,9-12H,1H2,(H2,8,13)/t2-,3-,4+,5+,6-/m1/s1" 
VPQ InChIKey         InChI                1.06  UKWLGCFJAVEFPE-RWOPYEJCSA-N                                                                            
VPQ SMILES_CANONICAL CACTVS               3.385 "NC(=O)[C@@H]1O[C@H](CO)[C@@H](O)[C@H](O)[C@@H]1O"                                                     
VPQ SMILES           CACTVS               3.385 "NC(=O)[CH]1O[CH](CO)[CH](O)[CH](O)[CH]1O"                                                             
VPQ SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C([C@@H]1[C@H]([C@@H]([C@@H]([C@@H](O1)C(=O)N)O)O)O)O"                                                
VPQ SMILES           "OpenEye OEToolkits" 2.0.7 "C(C1C(C(C(C(O1)C(=O)N)O)O)O)O"                                                                        
# 
_pdbx_chem_comp_identifier.comp_id           VPQ 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "(2~{R},3~{S},4~{S},5~{S},6~{R})-6-(hydroxymethyl)-3,4,5-tris(oxidanyl)oxane-2-carboxamide" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
VPQ "Create component" 2023-03-24 PDBE 
VPQ "Initial release"  2023-09-13 RCSB 
# 
