data_YAQ
# 
_chem_comp.id                                    YAQ 
_chem_comp.name                                  "(4S)-2-(4-chlorophenyl)-7-methyl-8-pentylimidazo[1,2-a]pyrimidin-5(8H)-one" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C18 H20 Cl N3 O" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-06-12 
_chem_comp.pdbx_modified_date                    2024-12-13 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        329.824 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     YAQ 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        7G7A 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              ? 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
YAQ C11  C1  C  0 1 Y N N N N N 12.415 3.023  -43.651 4.685  0.611  0.344  C11  YAQ 1  
YAQ C16  C2  C  0 1 N N N N N N 13.719 9.757  -48.235 -3.463 1.627  -0.312 C16  YAQ 2  
YAQ C17  C3  C  0 1 N N N N N N 13.349 10.996 -49.048 -4.925 1.363  -0.566 C17  YAQ 3  
YAQ C18  C4  C  0 1 N N N N N N 14.910 9.112  -48.510 -3.061 2.847  0.110  C18  YAQ 4  
YAQ C19  C5  C  0 1 N N N N N N 11.513 9.944  -46.830 -2.990 -0.686 -0.960 C19  YAQ 5  
YAQ C20  C6  C  0 1 N N N N N N 11.655 10.519 -45.364 -3.301 -1.568 0.252  C20  YAQ 6  
YAQ C21  C7  C  0 1 N N N N N N 10.241 10.514 -44.684 -3.762 -2.947 -0.226 C21  YAQ 7  
YAQ C22  C8  C  0 1 N N N N N N 10.332 10.210 -43.191 -4.072 -3.829 0.985  C22  YAQ 8  
YAQ C23  C9  C  0 1 N N N N N N 10.916 8.854  -42.897 -4.533 -5.207 0.507  C23  YAQ 9  
YAQ O1   O1  O  0 1 N N N N N N 16.295 7.217  -48.116 -1.320 4.184  0.727  O1   YAQ 10 
YAQ C2   C10 C  0 1 N N N N N N 15.263 7.842  -47.915 -1.691 3.088  0.346  C2   YAQ 11 
YAQ N3   N1  N  0 1 Y N N N N N 14.254 7.307  -46.992 -0.796 2.101  0.150  N3   YAQ 12 
YAQ C4   C11 C  0 1 Y N N N N N 14.182 6.084  -46.259 0.569  2.048  0.296  C4   YAQ 13 
YAQ C5   C12 C  0 1 Y N N N N N 12.998 6.165  -45.501 0.950  0.791  -0.044 C5   YAQ 14 
YAQ C6   C13 C  0 1 Y N N N N N 12.416 5.202  -44.610 2.339  0.271  -0.038 C6   YAQ 15 
YAQ C7   C14 C  0 1 Y N N N N N 11.267 5.542  -43.858 2.594  -1.048 -0.412 C7   YAQ 16 
YAQ C8   C15 C  0 1 Y N N N N N 10.696 4.608  -42.975 3.887  -1.529 -0.395 C8   YAQ 17 
YAQ C9   C16 C  0 1 Y N N N N N 11.288 3.382  -42.892 4.932  -0.701 -0.023 C9   YAQ 18 
YAQ CL10 CL1 CL 0 0 N N N N N N 10.630 2.233  -41.756 6.558  -1.309 -0.017 CL10 YAQ 19 
YAQ C12  C17 C  0 1 Y N N N N N 12.982 3.938  -44.521 3.394  1.099  0.341  C12  YAQ 20 
YAQ N13  N2  N  0 1 Y N N N N N 12.320 7.353  -45.739 -0.154 0.095  -0.388 N13  YAQ 21 
YAQ C14  C18 C  0 1 Y N N N N N 13.077 8.014  -46.661 -1.209 0.870  -0.276 C14  YAQ 22 
YAQ N15  N3  N  0 1 N N N N N N 12.797 9.253  -47.284 -2.549 0.634  -0.502 N15  YAQ 23 
YAQ H27  H1  H  0 1 N N N N N N 12.838 2.034  -43.555 5.503  1.252  0.638  H27  YAQ 24 
YAQ H29  H2  H  0 1 N N N N N N 14.173 11.246 -49.732 -5.499 2.266  -0.357 H29  YAQ 25 
YAQ H31  H3  H  0 1 N N N N N N 12.438 10.794 -49.630 -5.067 1.075  -1.607 H31  YAQ 26 
YAQ H30  H4  H  0 1 N N N N N N 13.169 11.841 -48.367 -5.267 0.557  0.083  H30  YAQ 27 
YAQ H32  H5  H  0 1 N N N N N N 15.604 9.574  -49.196 -3.784 3.633  0.264  H32  YAQ 28 
YAQ H33  H6  H  0 1 N N N N N N 11.289 10.772 -47.519 -2.201 -1.148 -1.552 H33  YAQ 29 
YAQ H34  H7  H  0 1 N N N N N N 10.688 9.216  -46.851 -3.887 -0.578 -1.570 H34  YAQ 30 
YAQ H36  H8  H  0 1 N N N N N N 12.347 9.890  -44.785 -2.404 -1.676 0.862  H36  YAQ 31 
YAQ H35  H9  H  0 1 N N N N N N 12.042 11.548 -45.406 -4.090 -1.107 0.845  H35  YAQ 32 
YAQ H37  H10 H  0 1 N N N N N N 9.777  11.502 -44.819 -4.659 -2.839 -0.836 H37  YAQ 33 
YAQ H38  H11 H  0 1 N N N N N N 9.617  9.747  -45.166 -2.972 -3.408 -0.819 H38  YAQ 34 
YAQ H39  H12 H  0 1 N N N N N N 10.965 10.974 -42.717 -3.175 -3.937 1.595  H39  YAQ 35 
YAQ H40  H13 H  0 1 N N N N N N 9.320  10.255 -42.763 -4.862 -3.367 1.578  H40  YAQ 36 
YAQ H42  H14 H  0 1 N N N N N N 10.953 8.698  -41.809 -5.430 -5.099 -0.103 H42  YAQ 37 
YAQ H41  H15 H  0 1 N N N N N N 10.288 8.077  -43.357 -3.744 -5.669 -0.086 H41  YAQ 38 
YAQ H43  H16 H  0 1 N N N N N N 11.933 8.796  -43.311 -4.754 -5.835 1.370  H43  YAQ 39 
YAQ H24  H17 H  0 1 N N N N N N 14.888 5.267  -46.281 1.214  2.851  0.619  H24  YAQ 40 
YAQ H25  H18 H  0 1 N N N N N N 10.827 6.523  -43.962 1.780  -1.693 -0.706 H25  YAQ 41 
YAQ H26  H19 H  0 1 N N N N N N 9.824  4.852  -42.386 4.086  -2.551 -0.684 H26  YAQ 42 
YAQ H28  H20 H  0 1 N N N N N N 13.844 3.675  -45.116 3.202  2.121  0.632  H28  YAQ 43 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
YAQ O1  C2   DOUB N N 1  
YAQ C2  N3   SING N N 2  
YAQ C2  C18  SING N N 3  
YAQ N3  C4   SING Y N 4  
YAQ N3  C14  SING Y N 5  
YAQ C4  C5   DOUB Y N 6  
YAQ C5  C6   SING N N 7  
YAQ C5  N13  SING Y N 8  
YAQ C6  C7   DOUB Y N 9  
YAQ C6  C12  SING Y N 10 
YAQ C7  C8   SING Y N 11 
YAQ C8  C9   DOUB Y N 12 
YAQ C9  CL10 SING N N 13 
YAQ C9  C11  SING Y N 14 
YAQ C11 C12  DOUB Y N 15 
YAQ N13 C14  DOUB Y N 16 
YAQ C14 N15  SING N N 17 
YAQ N15 C16  SING N N 18 
YAQ N15 C19  SING N N 19 
YAQ C16 C17  SING N N 20 
YAQ C16 C18  DOUB N N 21 
YAQ C19 C20  SING N N 22 
YAQ C20 C21  SING N N 23 
YAQ C21 C22  SING N N 24 
YAQ C22 C23  SING N N 25 
YAQ C11 H27  SING N N 26 
YAQ C17 H29  SING N N 27 
YAQ C17 H31  SING N N 28 
YAQ C17 H30  SING N N 29 
YAQ C18 H32  SING N N 30 
YAQ C19 H33  SING N N 31 
YAQ C19 H34  SING N N 32 
YAQ C20 H36  SING N N 33 
YAQ C20 H35  SING N N 34 
YAQ C21 H37  SING N N 35 
YAQ C21 H38  SING N N 36 
YAQ C22 H39  SING N N 37 
YAQ C22 H40  SING N N 38 
YAQ C23 H42  SING N N 39 
YAQ C23 H41  SING N N 40 
YAQ C23 H43  SING N N 41 
YAQ C4  H24  SING N N 42 
YAQ C7  H25  SING N N 43 
YAQ C8  H26  SING N N 44 
YAQ C12 H28  SING N N 45 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
YAQ SMILES           ACDLabs              12.01 "Clc1ccc(cc1)c1cn2c(n1)N(CCCCC)C(C)=CC2=O"                                                                              
YAQ InChI            InChI                1.06  "InChI=1S/C18H20ClN3O/c1-3-4-5-10-21-13(2)11-17(23)22-12-16(20-18(21)22)14-6-8-15(19)9-7-14/h6-9,11-12H,3-5,10H2,1-2H3" 
YAQ InChIKey         InChI                1.06  SJBGJXBZVGMLLE-UHFFFAOYSA-N                                                                                             
YAQ SMILES_CANONICAL CACTVS               3.385 "CCCCCN1C(=CC(=O)n2cc(nc12)c3ccc(Cl)cc3)C"                                                                              
YAQ SMILES           CACTVS               3.385 "CCCCCN1C(=CC(=O)n2cc(nc12)c3ccc(Cl)cc3)C"                                                                              
YAQ SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CCCCCN1c2nc(cn2C(=O)C=C1C)c3ccc(cc3)Cl"                                                                                
YAQ SMILES           "OpenEye OEToolkits" 2.0.7 "CCCCCN1c2nc(cn2C(=O)C=C1C)c3ccc(cc3)Cl"                                                                                
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
YAQ "SYSTEMATIC NAME" ACDLabs              12.01 "(4S)-2-(4-chlorophenyl)-7-methyl-8-pentylimidazo[1,2-a]pyrimidin-5(8H)-one" 
YAQ "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "2-(4-chlorophenyl)-7-methyl-8-pentyl-imidazo[1,2-a]pyrimidin-5-one"         
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
YAQ "Create component" 2023-06-12 RCSB 
YAQ "Initial release"  2024-12-18 RCSB 
# 
