data_YNQ
# 
_chem_comp.id                                    YNQ 
_chem_comp.name                                  "(2P)-2-{3-[(4R)-3-(trifluoromethyl)-5,6-dihydro[1,2,4]triazolo[4,3-a]pyrazine-7(8H)-carbonyl]phenyl}-1H-benzimidazole-4-carboxamide" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C21 H16 F3 N7 O2" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-02-13 
_chem_comp.pdbx_modified_date                    2024-02-02 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        455.393 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     YNQ 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8FYZ 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
YNQ N1  N1  N 0 1 Y N N N N N 37.419 12.239 -4.571  -3.901 -0.125 0.116  N1  YNQ 1  
YNQ C7  C1  C 0 1 Y N N N N N 34.366 12.830 -2.491  -7.318 -1.344 -0.752 C7  YNQ 2  
YNQ C8  C2  C 0 1 Y N N N N N 38.792 10.570 -5.783  -2.201 1.679  0.087  C8  YNQ 3  
YNQ N2  N2  N 0 1 Y N N N N N 36.797 10.100 -4.362  -4.547 1.732  -0.852 N2  YNQ 4  
YNQ C9  C3  C 0 1 Y N N N N N 39.878 11.421 -5.975  -1.236 0.929  0.754  C9  YNQ 5  
YNQ O1  O1  O 0 1 N N N N N N 43.169 11.646 -6.796  0.710  -0.117 2.570  O1  YNQ 6  
YNQ C1  C4  C 0 1 Y N N N N N 35.511 13.194 -3.204  -6.038 -1.442 -0.213 C1  YNQ 7  
YNQ C5  C5  C 0 1 Y N N N N N 34.735 10.482 -2.940  -6.883 0.912  -1.451 C5  YNQ 8  
YNQ C6  C6  C 0 1 Y N N N N N 33.986 11.498 -2.362  -7.731 -0.176 -1.364 C6  YNQ 9  
YNQ N3  N3  N 0 1 N N N N N N 41.798 13.226 -7.611  2.344  0.890  1.454  N3  YNQ 10 
YNQ C4  C7  C 0 1 Y N N N N N 35.871 10.845 -3.652  -5.603 0.842  -0.923 C4  YNQ 11 
YNQ C3  C8  C 0 1 Y N N N N N 37.690 10.979 -4.895  -3.526 1.091  -0.206 C3  YNQ 12 
YNQ C2  C9  C 0 1 Y N N N N N 36.269 12.172 -3.792  -5.163 -0.337 -0.296 C2  YNQ 13 
YNQ N4  N4  N 0 1 Y N N N N N 41.144 15.741 -8.595  4.490  -0.045 0.069  N4  YNQ 14 
YNQ N   N5  N 0 1 N N N N N N 37.158 14.943 -3.503  -6.439 -3.741 0.516  N   YNQ 15 
YNQ C   C10 C 0 1 N N N N N N 35.879 14.639 -3.322  -5.600 -2.689 0.439  C   YNQ 16 
YNQ O   O2  O 0 1 N N N N N N 34.999 15.504 -3.252  -4.481 -2.769 0.908  O   YNQ 17 
YNQ C10 C11 C 0 1 Y N N N N N 40.890 11.082 -6.869  0.009  1.490  1.026  C10 YNQ 18 
YNQ C11 C12 C 0 1 Y N N N N N 40.813 9.879  -7.563  0.283  2.801  0.627  C11 YNQ 19 
YNQ C12 C13 C 0 1 Y N N N N N 39.740 9.026  -7.366  -0.678 3.539  -0.034 C12 YNQ 20 
YNQ C13 C14 C 0 1 Y N N N N N 38.734 9.368  -6.479  -1.917 2.990  -0.301 C13 YNQ 21 
YNQ C14 C15 C 0 1 N N N N N N 42.044 12.007 -7.090  1.040  0.701  1.734  C14 YNQ 22 
YNQ C15 C16 C 0 1 N N N N N N 41.584 13.418 -9.054  3.391  0.213  2.234  C15 YNQ 23 
YNQ C16 C17 C 0 1 N N N N N N 41.912 14.844 -9.470  4.171  -0.737 1.317  C16 YNQ 24 
YNQ C17 C18 C 0 1 Y N N N N N 41.027 15.540 -7.253  3.873  1.067  -0.387 C17 YNQ 25 
YNQ C18 C19 C 0 1 Y N N N N N 40.402 16.873 -8.835  5.421  -0.362 -0.854 C18 YNQ 26 
YNQ C19 C20 C 0 1 N N N N N N 40.185 17.512 -10.177 6.377  -1.526 -0.798 C19 YNQ 27 
YNQ C20 C21 C 0 1 N N N N N N 41.736 14.360 -6.685  2.763  1.776  0.351  C20 YNQ 28 
YNQ F   F1  F 0 1 N N N N N N 41.327 17.703 -10.826 5.689  -2.708 -1.089 F   YNQ 29 
YNQ F1  F2  F 0 1 N N N N N N 39.596 18.694 -10.072 7.397  -1.336 -1.736 F1  YNQ 30 
YNQ F2  F3  F 0 1 N N N N N N 39.413 16.771 -10.959 6.931  -1.613 0.484  F2  YNQ 31 
YNQ N5  N6  N 0 1 Y N N N N N 40.282 16.466 -6.699  4.417  1.379  -1.522 N5  YNQ 32 
YNQ N6  N7  N 0 1 Y N N N N N 39.875 17.331 -7.719  5.338  0.530  -1.806 N6  YNQ 33 
YNQ H2  H2  H 0 1 N N N N N N 33.763 13.599 -2.030  -7.992 -2.186 -0.692 H2  YNQ 34 
YNQ H3  H3  H 0 1 N N N N N N 36.808 9.105  -4.464  -4.532 2.638  -1.196 H3  YNQ 35 
YNQ H4  H4  H 0 1 N N N N N N 39.935 12.350 -5.427  -1.453 -0.084 1.061  H4  YNQ 36 
YNQ H5  H5  H 0 1 N N N N N N 34.445 9.447  -2.840  -7.219 1.819  -1.932 H5  YNQ 37 
YNQ H6  H6  H 0 1 N N N N N N 33.095 11.251 -1.804  -8.726 -0.112 -1.779 H6  YNQ 38 
YNQ H7  H7  H 0 1 N N N N N N 37.437 15.899 -3.588  -6.151 -4.561 0.946  H7  YNQ 39 
YNQ H8  H8  H 0 1 N N N N N N 37.842 14.216 -3.555  -7.332 -3.677 0.142  H8  YNQ 40 
YNQ H9  H9  H 0 1 N N N N N N 41.594 9.609  -8.259  1.249  3.236  0.833  H9  YNQ 41 
YNQ H10 H10 H 0 1 N N N N N N 39.688 8.092  -7.906  -0.462 4.552  -0.340 H10 YNQ 42 
YNQ H11 H11 H 0 1 N N N N N N 37.901 8.698  -6.327  -2.665 3.573  -0.819 H11 YNQ 43 
YNQ H12 H12 H 0 1 N N N N N N 40.531 13.207 -9.292  4.071  0.955  2.651  H12 YNQ 44 
YNQ H13 H13 H 0 1 N N N N N N 42.232 12.724 -9.609  2.932  -0.356 3.043  H13 YNQ 45 
YNQ H14 H14 H 0 1 N N N N N N 42.989 15.033 -9.351  3.563  -1.616 1.101  H14 YNQ 46 
YNQ H15 H15 H 0 1 N N N N N N 41.625 15.005 -10.520 5.094  -1.043 1.810  H15 YNQ 47 
YNQ H16 H16 H 0 1 N N N N N N 41.209 14.040 -5.774  1.924  1.953  -0.322 H16 YNQ 48 
YNQ H17 H17 H 0 1 N N N N N N 42.763 14.659 -6.428  3.127  2.722  0.751  H17 YNQ 49 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
YNQ F2  C19 SING N N 1  
YNQ F   C19 SING N N 2  
YNQ C19 F1  SING N N 3  
YNQ C19 C18 SING N N 4  
YNQ C16 C15 SING N N 5  
YNQ C16 N4  SING N N 6  
YNQ C15 N3  SING N N 7  
YNQ C18 N4  SING Y N 8  
YNQ C18 N6  DOUB Y N 9  
YNQ N4  C17 SING Y N 10 
YNQ N6  N5  SING Y N 11 
YNQ N3  C14 SING N N 12 
YNQ N3  C20 SING N N 13 
YNQ C11 C12 DOUB Y N 14 
YNQ C11 C10 SING Y N 15 
YNQ C12 C13 SING Y N 16 
YNQ C17 N5  DOUB Y N 17 
YNQ C17 C20 SING N N 18 
YNQ C14 C10 SING N N 19 
YNQ C14 O1  DOUB N N 20 
YNQ C10 C9  DOUB Y N 21 
YNQ C13 C8  DOUB Y N 22 
YNQ C9  C8  SING Y N 23 
YNQ C8  C3  SING N N 24 
YNQ C3  N1  DOUB Y N 25 
YNQ C3  N2  SING Y N 26 
YNQ N1  C2  SING Y N 27 
YNQ N2  C4  SING Y N 28 
YNQ C2  C4  DOUB Y N 29 
YNQ C2  C1  SING Y N 30 
YNQ C4  C5  SING Y N 31 
YNQ N   C   SING N N 32 
YNQ C   O   DOUB N N 33 
YNQ C   C1  SING N N 34 
YNQ C1  C7  DOUB Y N 35 
YNQ C5  C6  DOUB Y N 36 
YNQ C7  C6  SING Y N 37 
YNQ C7  H2  SING N N 38 
YNQ N2  H3  SING N N 39 
YNQ C9  H4  SING N N 40 
YNQ C5  H5  SING N N 41 
YNQ C6  H6  SING N N 42 
YNQ N   H7  SING N N 43 
YNQ N   H8  SING N N 44 
YNQ C11 H9  SING N N 45 
YNQ C12 H10 SING N N 46 
YNQ C13 H11 SING N N 47 
YNQ C15 H12 SING N N 48 
YNQ C15 H13 SING N N 49 
YNQ C16 H14 SING N N 50 
YNQ C16 H15 SING N N 51 
YNQ C20 H16 SING N N 52 
YNQ C20 H17 SING N N 53 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
YNQ SMILES           ACDLabs              12.01 "NC(=O)c1cccc2[NH]c(nc12)c1cccc(c1)C(=O)N1Cc2nnc(n2CC1)C(F)(F)F"                                                                                                       
YNQ InChI            InChI                1.06  "InChI=1S/C21H16F3N7O2/c22-21(23,24)20-29-28-15-10-30(7-8-31(15)20)19(33)12-4-1-3-11(9-12)18-26-14-6-2-5-13(17(25)32)16(14)27-18/h1-6,9H,7-8,10H2,(H2,25,32)(H,26,27)" 
YNQ InChIKey         InChI                1.06  YRWQGHRMQBPXQI-UHFFFAOYSA-N                                                                                                                                            
YNQ SMILES_CANONICAL CACTVS               3.385 "NC(=O)c1cccc2[nH]c(nc12)c3cccc(c3)C(=O)N4CCn5c(C4)nnc5C(F)(F)F"                                                                                                       
YNQ SMILES           CACTVS               3.385 "NC(=O)c1cccc2[nH]c(nc12)c3cccc(c3)C(=O)N4CCn5c(C4)nnc5C(F)(F)F"                                                                                                       
YNQ SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1cc(cc(c1)C(=O)N2CCn3c(nnc3C(F)(F)F)C2)c4[nH]c5cccc(c5n4)C(=O)N"                                                                                                     
YNQ SMILES           "OpenEye OEToolkits" 2.0.7 "c1cc(cc(c1)C(=O)N2CCn3c(nnc3C(F)(F)F)C2)c4[nH]c5cccc(c5n4)C(=O)N"                                                                                                     
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
YNQ "SYSTEMATIC NAME" ACDLabs              12.01 "(2P)-2-{3-[(4R)-3-(trifluoromethyl)-5,6-dihydro[1,2,4]triazolo[4,3-a]pyrazine-7(8H)-carbonyl]phenyl}-1H-benzimidazole-4-carboxamide" 
YNQ "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "2-[3-[[3-(trifluoromethyl)-6,8-dihydro-5~{H}-[1,2,4]triazolo[4,3-a]pyrazin-7-yl]carbonyl]phenyl]-1~{H}-benzimidazole-4-carboxamide"  
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
YNQ "Create component" 2023-02-13 RCSB 
YNQ "Initial release"  2024-02-07 RCSB 
# 
