data_7SR
#

_chem_comp.id                                   7SR
_chem_comp.name                                 "(6S,9aS)-N-[(4-bromophenyl)methyl]-6-[(2S)-butan-2-yl]-8-(naphthalen-1-ylmethyl)-4,7-bis(oxidanylidene)-3,6,9,9a-tetrahydro-2H-pyrazino[1,2-a]pyrimidine-1-carboxamide"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C30 H33 Br N4 O3"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2021-10-21
_chem_comp.pdbx_modified_date                   2022-06-03
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       577.512
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    7SR
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       7VP9
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 PDBJ
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
7SR  C10  C1   C   0  1  N  N  N  67.561  -6.117  53.446   2.879  -3.584  -1.877  C10  7SR   1  
7SR  C17  C2   C   0  1  N  N  S  65.910  -4.110  55.699   1.523  -0.939   0.349  C17  7SR   2  
7SR  C20  C3   C   0  1  N  N  N  65.302  -1.945  52.682   4.510   0.727   1.982  C20  7SR   3  
7SR  C21  C4   C   0  1  Y  N  N  63.963  -2.516  52.216   5.050   1.577   0.862  C21  7SR   4  
7SR  C22  C5   C   0  1  Y  N  N  63.937  -3.487  51.222   4.308   2.672   0.386  C22  7SR   5  
7SR  C24  C6   C   0  1  Y  N  N  65.101  -4.924  49.676   2.368   4.069   0.448  C24  7SR   6  
7SR  C26  C7   C   0  1  Y  N  N  62.696  -5.009  49.776   4.092   4.556  -1.145  C26  7SR   7  
7SR  C28  C8   C   0  1  Y  N  N  61.533  -3.540  51.349   6.085   3.132  -1.217  C28  7SR   8  
7SR  C2   C9   C   0  1  N  N  N  65.081  -5.781  57.483  -0.632   0.064  -0.171  C2   7SR   9  
7SR  C4   C10  C   0  1  N  N  N  65.370  -3.269  57.949  -0.613  -1.782   1.423  C4   7SR  10  
7SR  C5   C11  C   0  1  N  N  N  66.786  -3.000  58.315  -0.277  -3.212   0.980  C5   7SR  11  
7SR  C6   C12  C   0  1  N  N  N  67.779  -3.145  57.146   1.214  -3.341   0.836  C6   7SR  12  
7SR  C8   C13  C   0  1  N  N  S  68.002  -3.880  54.718   3.448  -2.543   0.322  C8   7SR  13  
7SR  C9   C14  C   0  1  N  N  S  68.445  -5.332  54.418   3.765  -2.554  -1.175  C9   7SR  14  
7SR  C11  C15  C   0  1  N  N  N  68.022  -7.499  52.975   3.106  -3.508  -3.388  C11  7SR  15  
7SR  C18  C16  C   0  1  N  N  N  65.273  -2.923  54.998   2.207  -0.052   1.393  C18  7SR  16  
7SR  C23  C17  C   0  1  Y  N  N  65.124  -3.947  50.665   3.057   3.000   0.934  C23  7SR  17  
7SR  C25  C18  C   0  1  Y  N  N  63.893  -5.454  49.230   2.884   4.844  -0.589  C25  7SR  18  
7SR  C27  C19  C   0  1  Y  N  N  62.720  -4.003  50.792   4.833   3.461  -0.669  C27  7SR  19  
7SR  C29  C20  C   0  1  Y  N  N  61.559  -2.563  52.337   6.777   2.068  -0.727  C29  7SR  20  
7SR  C30  C21  C   0  1  Y  N  N  62.773  -2.045  52.770   6.260   1.293   0.310  C30  7SR  21  
7SR  C31  C22  C   0  1  N  N  N  67.334  -3.180  53.604   4.213  -1.437   0.995  C31  7SR  22  
7SR  C35  C23  C   0  1  N  N  N  64.317  -7.366  59.264  -2.749   1.002  -0.928  C35  7SR  23  
7SR  C36  C24  C   0  1  Y  N  N  62.847  -7.771  59.071  -4.220   0.811  -0.660  C36  7SR  24  
7SR  C37  C25  C   0  1  Y  N  N  62.192  -8.374  60.138  -4.843   1.543   0.333  C37  7SR  25  
7SR  C38  C26  C   0  1  Y  N  N  60.872  -8.748  59.996  -6.192   1.368   0.579  C38  7SR  26  
7SR  C39  C27  C   0  1  Y  N  N  60.230  -8.525  58.787  -6.919   0.460  -0.171  C39  7SR  27  
7SR  C41  C28  C   0  1  Y  N  N  60.890  -7.928  57.717  -6.295  -0.272  -1.165  C41  7SR  28  
7SR  C42  C29  C   0  1  Y  N  N  62.214  -7.549  57.859  -4.947  -0.092  -1.413  C42  7SR  29  
7SR  C46  C30  C   0  1  N  N  N  68.776  -6.143  55.674   5.236  -2.921  -1.382  C46  7SR  30  
7SR  N3   N1   N   0  1  N  N  N  65.385  -4.400  57.052   0.074  -0.858   0.513  N3   7SR  31  
7SR  N7   N2   N   0  1  N  N  N  67.289  -3.733  55.866   2.005  -2.312   0.520  N7   7SR  32  
7SR  N19  N3   N   0  1  N  N  N  65.937  -2.684  53.777   3.639  -0.314   1.430  N19  7SR  33  
7SR  N34  N4   N   0  1  N  N  N  64.635  -5.995  58.847  -1.977   0.073  -0.099  N34  7SR  34  
7SR  O1   O1   O   0  1  N  N  N  65.165  -6.705  56.685  -0.054   0.889  -0.853  O1   7SR  35  
7SR  O32  O2   O   0  1  N  N  N  67.949  -2.980  52.572   5.409  -1.572   1.149  O32  7SR  36  
7SR  O33  O3   O   0  1  N  N  N  68.940  -2.797  57.269   1.720  -4.429   1.014  O33  7SR  37  
7SR  BR1  BR1  BR  0  0  N  N  N  58.359  -9.067  58.609  -8.764   0.220   0.165  BR1  7SR  38  
7SR  H1   H1   H   0  1  N  N  N  67.438  -5.495  52.547   3.132  -4.583  -1.521  H1   7SR  39  
7SR  H2   H2   H   0  1  N  N  N  66.585  -6.252  53.935   1.832  -3.374  -1.656  H2   7SR  40  
7SR  H3   H3   H   0  1  N  N  N  65.826  -5.003  55.062   1.794  -0.584  -0.645  H3   7SR  41  
7SR  H4   H4   H   0  1  N  N  N  65.991  -1.945  51.825   5.338   0.262   2.517  H4   7SR  42  
7SR  H5   H5   H   0  1  N  N  N  65.135  -0.911  53.018   3.938   1.351   2.669  H5   7SR  43  
7SR  H6   H6   H   0  1  N  N  N  66.029  -5.275  49.250   1.406   4.319   0.871  H6   7SR  44  
7SR  H7   H7   H   0  1  N  N  N  61.756  -5.419  49.437   4.480   5.165  -1.947  H7   7SR  45  
7SR  H8   H8   H   0  1  N  N  N  60.588  -3.941  51.013   6.498   3.724  -2.021  H8   7SR  46  
7SR  H9   H9   H   0  1  N  N  N  64.934  -2.392  57.448  -1.690  -1.622   1.368  H9   7SR  47  
7SR  H10  H10  H   0  1  N  N  N  64.784  -3.506  58.849  -0.267  -1.622   2.444  H10  7SR  48  
7SR  H11  H11  H   0  1  N  N  N  67.078  -3.707  59.106  -0.634  -3.919   1.729  H11  7SR  49  
7SR  H12  H12  H   0  1  N  N  N  66.854  -1.972  58.699  -0.757  -3.420   0.024  H12  7SR  50  
7SR  H13  H13  H   0  1  N  N  N  68.946  -3.335  54.870   3.728  -3.501   0.761  H13  7SR  51  
7SR  H14  H14  H   0  1  N  N  N  69.407  -5.224  53.895   3.575  -1.566  -1.593  H14  7SR  52  
7SR  H15  H15  H   0  1  N  N  N  67.275  -7.920  52.286   2.853  -2.509  -3.743  H15  7SR  53  
7SR  H16  H16  H   0  1  N  N  N  68.988  -7.406  52.457   4.153  -3.718  -3.609  H16  7SR  54  
7SR  H17  H17  H   0  1  N  N  N  68.135  -8.164  53.844   2.474  -4.242  -3.888  H17  7SR  55  
7SR  H18  H18  H   0  1  N  N  N  65.353  -2.033  55.639   2.039   0.995   1.139  H18  7SR  56  
7SR  H19  H19  H   0  1  N  N  N  64.212  -3.139  54.802   1.780  -0.257   2.374  H19  7SR  57  
7SR  H20  H20  H   0  1  N  N  N  66.068  -3.544  51.002   2.645   2.408   1.738  H20  7SR  58  
7SR  H21  H21  H   0  1  N  N  N  63.887  -6.211  48.460   2.316   5.686  -0.956  H21  7SR  59  
7SR  H22  H22  H   0  1  N  N  N  60.635  -2.206  52.768   7.741   1.821  -1.147  H22  7SR  60  
7SR  H23  H23  H   0  1  N  N  N  62.795  -1.281  53.533   6.830   0.453   0.680  H23  7SR  61  
7SR  H24  H24  H   0  1  N  N  N  64.942  -8.056  58.678  -2.543   0.808  -1.980  H24  7SR  62  
7SR  H25  H25  H   0  1  N  N  N  64.562  -7.465  60.332  -2.466   2.026  -0.685  H25  7SR  63  
7SR  H26  H26  H   0  1  N  N  N  62.711  -8.548  61.069  -4.275   2.251   0.918  H26  7SR  64  
7SR  H27  H27  H   0  1  N  N  N  60.344  -9.210  60.817  -6.678   1.939   1.355  H27  7SR  65  
7SR  H28  H28  H   0  1  N  N  N  60.373  -7.762  56.783  -6.863  -0.978  -1.753  H28  7SR  66  
7SR  H29  H29  H   0  1  N  N  N  62.744  -7.088  57.039  -4.460  -0.664  -2.189  H29  7SR  67  
7SR  H30  H30  H   0  1  N  N  N  69.411  -5.542  56.342   5.484  -2.844  -2.441  H30  7SR  68  
7SR  H31  H31  H   0  1  N  N  N  67.844  -6.409  56.195   5.865  -2.237  -0.811  H31  7SR  69  
7SR  H32  H32  H   0  1  N  N  N  69.311  -7.061  55.387   5.407  -3.942  -1.041  H32  7SR  70  
7SR  H33  H33  H   0  1  N  N  N  64.547  -5.230  59.485  -2.435  -0.536   0.501  H33  7SR  71  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
7SR  C25  C24  DOUB  Y  N   1  
7SR  C25  C26  SING  Y  N   2  
7SR  C24  C23  SING  Y  N   3  
7SR  C26  C27  DOUB  Y  N   4  
7SR  C23  C22  DOUB  Y  N   5  
7SR  C27  C22  SING  Y  N   6  
7SR  C27  C28  SING  Y  N   7  
7SR  C22  C21  SING  Y  N   8  
7SR  C28  C29  DOUB  Y  N   9  
7SR  C21  C20  SING  N  N  10  
7SR  C21  C30  DOUB  Y  N  11  
7SR  C29  C30  SING  Y  N  12  
7SR  O32  C31  DOUB  N  N  13  
7SR  C20  N19  SING  N  N  14  
7SR  C11  C10  SING  N  N  15  
7SR  C10  C9   SING  N  N  16  
7SR  C31  N19  SING  N  N  17  
7SR  C31  C8   SING  N  N  18  
7SR  N19  C18  SING  N  N  19  
7SR  C9   C8   SING  N  N  20  
7SR  C9   C46  SING  N  N  21  
7SR  C8   N7   SING  N  N  22  
7SR  C18  C17  SING  N  N  23  
7SR  C17  N7   SING  N  N  24  
7SR  C17  N3   SING  N  N  25  
7SR  N7   C6   SING  N  N  26  
7SR  O1   C2   DOUB  N  N  27  
7SR  N3   C2   SING  N  N  28  
7SR  N3   C4   SING  N  N  29  
7SR  C6   O33  DOUB  N  N  30  
7SR  C6   C5   SING  N  N  31  
7SR  C2   N34  SING  N  N  32  
7SR  C41  C42  DOUB  Y  N  33  
7SR  C41  C39  SING  Y  N  34  
7SR  C42  C36  SING  Y  N  35  
7SR  C4   C5   SING  N  N  36  
7SR  BR1  C39  SING  N  N  37  
7SR  C39  C38  DOUB  Y  N  38  
7SR  N34  C35  SING  N  N  39  
7SR  C36  C35  SING  N  N  40  
7SR  C36  C37  DOUB  Y  N  41  
7SR  C38  C37  SING  Y  N  42  
7SR  C10  H1   SING  N  N  43  
7SR  C10  H2   SING  N  N  44  
7SR  C17  H3   SING  N  N  45  
7SR  C20  H4   SING  N  N  46  
7SR  C20  H5   SING  N  N  47  
7SR  C24  H6   SING  N  N  48  
7SR  C26  H7   SING  N  N  49  
7SR  C28  H8   SING  N  N  50  
7SR  C4   H9   SING  N  N  51  
7SR  C4   H10  SING  N  N  52  
7SR  C5   H11  SING  N  N  53  
7SR  C5   H12  SING  N  N  54  
7SR  C8   H13  SING  N  N  55  
7SR  C9   H14  SING  N  N  56  
7SR  C11  H15  SING  N  N  57  
7SR  C11  H16  SING  N  N  58  
7SR  C11  H17  SING  N  N  59  
7SR  C18  H18  SING  N  N  60  
7SR  C18  H19  SING  N  N  61  
7SR  C23  H20  SING  N  N  62  
7SR  C25  H21  SING  N  N  63  
7SR  C29  H22  SING  N  N  64  
7SR  C30  H23  SING  N  N  65  
7SR  C35  H24  SING  N  N  66  
7SR  C35  H25  SING  N  N  67  
7SR  C37  H26  SING  N  N  68  
7SR  C38  H27  SING  N  N  69  
7SR  C41  H28  SING  N  N  70  
7SR  C42  H29  SING  N  N  71  
7SR  C46  H30  SING  N  N  72  
7SR  C46  H31  SING  N  N  73  
7SR  C46  H32  SING  N  N  74  
7SR  N34  H33  SING  N  N  75  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
7SR  InChI             InChI                 1.03   "InChI=1S/C30H33BrN4O3/c1-3-20(2)28-29(37)33(18-23-9-6-8-22-7-4-5-10-25(22)23)19-26-34(16-15-27(36)35(26)28)30(38)32-17-21-11-13-24(31)14-12-21/h4-14,20,26,28H,3,15-19H2,1-2H3,(H,32,38)/t20-,26+,28-/m0/s1"  
7SR  InChIKey          InChI                 1.03   XXPDBCOMEKQMAR-GFNGZDJJSA-N  
7SR  SMILES_CANONICAL  CACTVS                3.385  "CC[C@H](C)[C@@H]1N2[C@H](CN(Cc3cccc4ccccc34)C1=O)N(CCC2=O)C(=O)NCc5ccc(Br)cc5"  
7SR  SMILES            CACTVS                3.385  "CC[CH](C)[CH]1N2[CH](CN(Cc3cccc4ccccc34)C1=O)N(CCC2=O)C(=O)NCc5ccc(Br)cc5"  
7SR  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "CC[C@H](C)[C@H]1C(=O)N(C[C@H]2N1C(=O)CCN2C(=O)NCc3ccc(cc3)Br)Cc4cccc5c4cccc5"  
7SR  SMILES            "OpenEye OEToolkits"  2.0.7  "CCC(C)C1C(=O)N(CC2N1C(=O)CCN2C(=O)NCc3ccc(cc3)Br)Cc4cccc5c4cccc5"  
#
_pdbx_chem_comp_identifier.comp_id          7SR
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version  2.0.7
_pdbx_chem_comp_identifier.identifier       "(6~{S},9~{a}~{S})-~{N}-[(4-bromophenyl)methyl]-6-[(2~{S})-butan-2-yl]-8-(naphthalen-1-ylmethyl)-4,7-bis(oxidanylidene)-3,6,9,9~{a}-tetrahydro-2~{H}-pyrazino[1,2-a]pyrimidine-1-carboxamide"
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
7SR  "Create component"  2021-10-21  PDBJ  
7SR  "Initial release"   2022-06-08  RCSB  
##
