data_9VR
#

_chem_comp.id                                   9VR
_chem_comp.name                                 "(2S)-2-azanyl-6-[[4-[3-(trifluoromethyl)-1,2-diazirin-3-yl]phenyl]methoxycarbonylamino]hexanoic acid"
_chem_comp.type                                 "peptide linking"
_chem_comp.pdbx_type                            ATOMP
_chem_comp.formula                              "C16 H19 F3 N4 O4"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2018-08-16
_chem_comp.pdbx_modified_date                   2019-04-12
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       388.342
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    9VR
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       6ABM
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 PDBJ
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
9VR  C10  C1   C  0  1  Y  N  N  229.260  47.047  204.593    3.018   0.796   1.081  C10  9VR   1  
9VR  CE   C2   C  0  1  N  N  N  225.186  45.710  205.688   -3.656   1.069  -0.154  CE   9VR   2  
9VR  CB   C3   C  0  1  N  N  N  223.349  46.502  209.010   -7.110  -0.625   0.007  CB   9VR   3  
9VR  CA   C4   C  0  1  N  N  S  223.537  48.020  209.246   -8.526  -0.047  -0.050  CA   9VR   4  
9VR  C26  C5   C  0  1  Y  N  N  229.665  46.219  202.366    3.020   0.567  -1.303  C26  9VR   5  
9VR  N1   N1   N  0  1  N  N  N  228.746  50.311  201.089    6.195  -2.435  -0.541  N1   9VR   6  
9VR  N2   N2   N  0  1  N  N  N  230.026  50.221  200.992    6.132  -2.423   0.697  N2   9VR   7  
9VR  C3   C6   C  0  1  N  N  N  229.481  50.006  202.324    6.119  -1.103   0.063  C3   9VR   8  
9VR  C4   C7   C  0  1  N  N  N  229.781  51.051  203.439    7.388  -0.250   0.120  C4   9VR   9  
9VR  F5   F1   F  0  1  N  N  N  229.229  50.861  204.647    7.293   0.657   1.181  F5   9VR  10  
9VR  F6   F2   F  0  1  N  N  N  229.359  52.240  203.032    8.498  -1.080   0.313  F6   9VR  11  
9VR  F7   F3   F  0  1  N  N  N  231.095  51.142  203.629    7.533   0.451  -1.082  F7   9VR  12  
9VR  C8   C8   C  0  1  Y  N  N  229.478  48.597  202.791    4.814  -0.351  -0.010  C8   9VR  13  
9VR  C9   C9   C  0  1  Y  N  N  229.257  48.328  204.130    4.214   0.106   1.148  C9   9VR  14  
9VR  C11  C10  C  0  1  Y  N  N  229.447  45.991  203.736    2.419   1.023  -0.144  C11  9VR  15  
9VR  C12  C11  C  0  1  N  N  N  229.424  44.608  204.294    1.112   1.770  -0.217  C12  9VR  16  
9VR  O13  O1   O  0  1  N  N  N  228.936  44.827  205.653    0.011   0.827  -0.127  O13  9VR  17  
9VR  C14  C12  C  0  1  N  N  N  227.509  44.715  205.804   -1.234   1.336  -0.177  C14  9VR  18  
9VR  O15  O2   O  0  1  N  N  N  227.011  43.659  206.164   -1.397   2.534  -0.293  O15  9VR  19  
9VR  NZ   N3   N  0  1  N  N  N  226.632  45.852  205.512   -2.301   0.515  -0.099  NZ   9VR  20  
9VR  CD   C13  C  0  1  N  N  N  224.940  45.950  207.164   -4.676  -0.067  -0.045  CD   9VR  21  
9VR  CG   C14  C  0  1  N  N  N  223.463  46.023  207.553   -6.091   0.511  -0.102  CG   9VR  22  
9VR  N    N4   N  0  1  N  N  N  224.032  48.246  210.631   -8.758   0.797   1.130  N    9VR  23  
9VR  C    C15  C  0  1  N  N  N  222.314  48.952  209.013   -9.528  -1.173  -0.067  C    9VR  24  
9VR  O    O3   O  0  1  N  N  N  221.258  48.602  208.216  -10.100  -1.487   0.950  O    9VR  25  
9VR  OXT  O4   O  0  1  N  Y  N  222.301  50.186  209.605   -9.785  -1.826  -1.211  OXT  9VR  26  
9VR  C27  C16  C  0  1  Y  N  N  229.682  47.547  201.884    4.219  -0.118  -1.236  C27  9VR  27  
9VR  H1   H1   H  0  1  N  N  N  229.114  46.860  205.647    2.549   1.153   1.986  H1   9VR  28  
9VR  HE2  H2   H  0  1  N  N  N  224.649  46.454  205.081   -3.798   1.765   0.673  HE2  9VR  29  
9VR  HE3  H3   H  0  1  N  N  N  224.860  44.699  205.402   -3.797   1.594  -1.098  HE3  9VR  30  
9VR  HB2  H4   H  0  1  N  N  N  222.349  46.226  209.377   -6.970  -1.150   0.952  HB2  9VR  31  
9VR  HB3  H5   H  0  1  N  N  N  224.114  45.974  209.598   -6.969  -1.321  -0.820  HB3  9VR  32  
9VR  HA   H6   H  0  1  N  N  N  224.325  48.354  208.555   -8.638   0.552  -0.953  HA   9VR  33  
9VR  H7   H7   H  0  1  N  N  N  229.817  45.390  201.691    2.552   0.744  -2.260  H7   9VR  34  
9VR  H10  H10  H  0  1  N  N  N  229.080  49.143  204.816    4.679  -0.076   2.106  H10  9VR  35  
9VR  H11  H11  H  0  1  N  N  N  228.741  43.961  203.725    1.052   2.479   0.609  H11  9VR  36  
9VR  H12  H12  H  0  1  N  N  N  230.430  44.164  204.299    1.053   2.308  -1.163  H12  9VR  37  
9VR  HZ   H13  H  0  1  N  N  N  227.018  46.718  205.195   -2.171  -0.442  -0.007  HZ   9VR  38  
9VR  HD2  H14  H  0  1  N  N  N  225.405  45.128  207.729   -4.534  -0.763  -0.872  HD2  9VR  39  
9VR  HD3  H15  H  0  1  N  N  N  225.417  46.901  207.442   -4.535  -0.592   0.900  HD3  9VR  40  
9VR  HG2  H16  H  0  1  N  N  N  222.942  46.731  206.891   -6.232   1.036  -1.046  HG2  9VR  41  
9VR  HG3  H17  H  0  1  N  N  N  223.007  45.027  207.456   -6.233   1.207   0.725  HG3  9VR  42  
9VR  H    H18  H  0  1  N  N  N  224.154  49.226  210.786   -9.662   1.242   1.084  H    9VR  43  
9VR  H2   H19  H  0  1  N  Y  N  223.367  47.886  211.285   -8.660   0.264   1.981  H2   9VR  44  
9VR  HXT  H21  H  0  1  N  Y  N  221.508  50.648  209.359  -10.435  -2.540  -1.172  HXT  9VR  45  
9VR  H22  H22  H  0  1  N  N  N  229.849  47.750  200.836    4.688  -0.476  -2.141  H22  9VR  46  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
9VR  N2   N1   DOUB  N  N   1  
9VR  N2   C3   SING  N  N   2  
9VR  N1   C3   SING  N  N   3  
9VR  C27  C26  DOUB  Y  N   4  
9VR  C27  C8   SING  Y  N   5  
9VR  C3   C8   SING  N  N   6  
9VR  C3   C4   SING  N  N   7  
9VR  C26  C11  SING  Y  N   8  
9VR  C8   C9   DOUB  Y  N   9  
9VR  F6   C4   SING  N  N  10  
9VR  C4   F7   SING  N  N  11  
9VR  C4   F5   SING  N  N  12  
9VR  C11  C12  SING  N  N  13  
9VR  C11  C10  DOUB  Y  N  14  
9VR  C9   C10  SING  Y  N  15  
9VR  C12  O13  SING  N  N  16  
9VR  NZ   CE   SING  N  N  17  
9VR  NZ   C14  SING  N  N  18  
9VR  O13  C14  SING  N  N  19  
9VR  CE   CD   SING  N  N  20  
9VR  C14  O15  DOUB  N  N  21  
9VR  CD   CG   SING  N  N  22  
9VR  CG   CB   SING  N  N  23  
9VR  O    C    DOUB  N  N  24  
9VR  CB   CA   SING  N  N  25  
9VR  C    CA   SING  N  N  26  
9VR  C    OXT  SING  N  N  27  
9VR  CA   N    SING  N  N  28  
9VR  C10  H1   SING  N  N  29  
9VR  CE   HE2  SING  N  N  30  
9VR  CE   HE3  SING  N  N  31  
9VR  CB   HB2  SING  N  N  32  
9VR  CB   HB3  SING  N  N  33  
9VR  CA   HA   SING  N  N  34  
9VR  C26  H7   SING  N  N  35  
9VR  C9   H10  SING  N  N  36  
9VR  C12  H11  SING  N  N  37  
9VR  C12  H12  SING  N  N  38  
9VR  NZ   HZ   SING  N  N  39  
9VR  CD   HD2  SING  N  N  40  
9VR  CD   HD3  SING  N  N  41  
9VR  CG   HG2  SING  N  N  42  
9VR  CG   HG3  SING  N  N  43  
9VR  N    H    SING  N  N  44  
9VR  N    H2   SING  N  N  45  
9VR  OXT  HXT  SING  N  N  46  
9VR  C27  H22  SING  N  N  47  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
9VR  InChI             InChI                 1.03   "InChI=1S/C16H19F3N4O4/c17-16(18,19)15(22-23-15)11-6-4-10(5-7-11)9-27-14(26)21-8-2-1-3-12(20)13(24)25/h4-7,12H,1-3,8-9,20H2,(H,21,26)(H,24,25)/t12-/m0/s1"  
9VR  InChIKey          InChI                 1.03   MCWCMRBMGUKPHR-LBPRGKRZSA-N  
9VR  SMILES_CANONICAL  CACTVS                3.385  "N[C@@H](CCCCNC(=O)OCc1ccc(cc1)C2(N=N2)C(F)(F)F)C(O)=O"  
9VR  SMILES            CACTVS                3.385  "N[CH](CCCCNC(=O)OCc1ccc(cc1)C2(N=N2)C(F)(F)F)C(O)=O"  
9VR  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.6  "c1cc(ccc1COC(=O)NCCCC[C@@H](C(=O)O)N)C2(N=N2)C(F)(F)F"  
9VR  SMILES            "OpenEye OEToolkits"  2.0.6  "c1cc(ccc1COC(=O)NCCCCC(C(=O)O)N)C2(N=N2)C(F)(F)F"  
#
_pdbx_chem_comp_identifier.comp_id          9VR
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version  2.0.6
_pdbx_chem_comp_identifier.identifier       "(2~{S})-2-azanyl-6-[[4-[3-(trifluoromethyl)-1,2-diazirin-3-yl]phenyl]methoxycarbonylamino]hexanoic acid"
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
9VR  "Create component"  2018-08-16  PDBJ  
9VR  "Initial release"   2019-04-17  RCSB  
##
