data_A1AFR
# 
_chem_comp.id                                    A1AFR 
_chem_comp.name                                  "1-[(3S)-3-{4-amino-3-[(3,5-dimethoxyphenyl)ethynyl]-1H-pyrazolo[3,4-d]pyrimidin-1-yl}pyrrolidin-1-yl]propan-1-one" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C22 H24 N6 O3" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2024-02-23 
_chem_comp.pdbx_modified_date                    2024-12-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        420.464 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     A1AFR 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8W2X 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
A1AFR C0N C1  C 0 1 N N N N N N 23.551 7.225  19.455 6.932  1.785  0.495  C0N A1AFR 1  
A1AFR O01 O1  O 0 1 N N N N N N 22.912 6.095  19.995 7.187  0.384  0.382  O01 A1AFR 2  
A1AFR C0E C2  C 0 1 Y N N N N N 22.701 5.006  19.131 6.109  -0.428 0.215  C0E A1AFR 3  
A1AFR C0O C3  C 0 1 Y N N N N N 21.700 4.098  19.447 4.837  0.116  0.163  C0O A1AFR 4  
A1AFR C0C C4  C 0 1 Y N N N N N 23.471 4.806  17.981 6.287  -1.798 0.093  C0C A1AFR 5  
A1AFR C0D C5  C 0 1 Y N N N N N 23.241 3.705  17.161 5.191  -2.632 -0.083 C0D A1AFR 6  
A1AFR O02 O2  O 0 1 N N N N N N 23.964 3.435  15.993 5.372  -3.973 -0.207 O02 A1AFR 7  
A1AFR C0U C6  C 0 1 N N N N N N 25.209 4.044  15.809 4.201  -4.771 -0.391 C0U A1AFR 8  
A1AFR C0R C7  C 0 1 Y N N N N N 22.242 2.812  17.486 3.915  -2.099 -0.137 C0R A1AFR 9  
A1AFR C0J C8  C 0 1 Y N N N N N 21.480 3.009  18.621 3.730  -0.720 -0.009 C0J A1AFR 10 
A1AFR C0S C9  C 0 1 N N N N N N 20.387 2.012  18.951 2.412  -0.163 -0.063 C0S A1AFR 11 
A1AFR C0H C10 C 0 1 N N N N N N 19.520 1.307  19.283 1.331  0.293  -0.108 C0H A1AFR 12 
A1AFR C0G C11 C 0 1 Y N N N N N 18.369 0.443  19.721 0.013  0.850  -0.163 C0G A1AFR 13 
A1AFR N09 N1  N 0 1 Y N N N N N 17.192 0.433  19.151 -1.110 0.182  -0.323 N09 A1AFR 14 
A1AFR C0A C12 C 0 1 Y N N N N N 18.376 -0.488 20.805 -0.337 2.267  -0.045 C0A A1AFR 15 
A1AFR C0F C13 C 0 1 Y N N N N N 19.301 -0.936 21.781 0.387  3.456  0.141  C0F A1AFR 16 
A1AFR N05 N2  N 0 1 N N N N N N 20.653 -0.417 21.863 1.764  3.436  0.255  N05 A1AFR 17 
A1AFR N06 N3  N 0 1 Y N N N N N 18.916 -1.863 22.655 -0.285 4.601  0.203  N06 A1AFR 18 
A1AFR C0L C14 C 0 1 Y N N N N N 17.677 -2.370 22.618 -1.602 4.626  0.094  C0L A1AFR 19 
A1AFR N08 N4  N 0 1 Y N N N N N 16.778 -1.982 21.725 -2.320 3.539  -0.080 N08 A1AFR 20 
A1AFR C0B C15 C 0 1 Y N N N N N 17.105 -1.040 20.806 -1.737 2.343  -0.156 C0B A1AFR 21 
A1AFR N04 N5  N 0 1 Y N N N N N 16.422 -0.460 19.795 -2.192 1.068  -0.324 N04 A1AFR 22 
A1AFR C0K C16 C 0 1 N N S N N N 15.094 -0.757 19.481 -3.598 0.686  -0.479 C0K A1AFR 23 
A1AFR C0I C17 C 0 1 N N N N N N 14.721 -0.355 17.995 -3.996 -0.397 0.554  C0I A1AFR 24 
A1AFR C0Q C18 C 0 1 N N N N N N 14.139 0.116  20.299 -3.826 -0.063 -1.819 C0Q A1AFR 25 
A1AFR C0T C19 C 0 1 N N N N N N 13.996 1.256  19.568 -5.060 -0.940 -1.519 C0T A1AFR 26 
A1AFR N07 N6  N 0 1 N N N N N N 14.442 0.929  18.045 -5.134 -1.105 -0.060 N07 A1AFR 27 
A1AFR C0P C20 C 0 1 N N N N N N 14.515 1.899  16.970 -6.084 -1.790 0.606  C0P A1AFR 28 
A1AFR O03 O3  O 0 1 N N N N N N 14.223 3.017  17.214 -6.045 -1.861 1.816  O03 A1AFR 29 
A1AFR C0M C21 C 0 1 N N N N N N 14.944 1.538  15.546 -7.196 -2.468 -0.153 C0M A1AFR 30 
A1AFR C0V C22 C 0 1 N N N N N N 16.194 2.303  15.115 -8.132 -3.170 0.832  C0V A1AFR 31 
A1AFR H1  H1  H 0 1 N N N N N N 23.652 7.996  20.233 7.875  2.317  0.623  H1  A1AFR 32 
A1AFR H2  H2  H 0 1 N N N N N N 24.549 6.942  19.088 6.436  2.139  -0.410 H2  A1AFR 33 
A1AFR H3  H3  H 0 1 N N N N N N 22.953 7.621  18.621 6.291  1.970  1.357  H3  A1AFR 34 
A1AFR H4  H4  H 0 1 N N N N N N 21.097 4.240  20.331 4.700  1.183  0.254  H4  A1AFR 35 
A1AFR H5  H5  H 0 1 N N N N N N 24.249 5.510  17.727 7.281  -2.218 0.135  H5  A1AFR 36 
A1AFR H6  H6  H 0 1 N N N N N N 25.636 3.724  14.847 3.536  -4.643 0.463  H6  A1AFR 37 
A1AFR H7  H7  H 0 1 N N N N N N 25.086 5.137  15.810 3.688  -4.459 -1.300 H7  A1AFR 38 
A1AFR H8  H8  H 0 1 N N N N N N 25.885 3.750  16.625 4.486  -5.820 -0.476 H8  A1AFR 39 
A1AFR H9  H9  H 0 1 N N N N N N 22.055 1.958  16.852 3.062  -2.748 -0.274 H9  A1AFR 40 
A1AFR H10 H10 H 0 1 N N N N N N 21.136 -0.861 22.618 2.242  2.593  0.208  H10 A1AFR 41 
A1AFR H11 H11 H 0 1 N N N N N N 21.133 -0.601 21.005 2.252  4.264  0.383  H11 A1AFR 42 
A1AFR H12 H12 H 0 1 N N N N N N 17.401 -3.122 23.342 -2.108 5.579  0.151  H12 A1AFR 43 
A1AFR H13 H13 H 0 1 N N N N N N 14.861 -1.820 19.639 -4.248 1.557  -0.403 H13 A1AFR 44 
A1AFR H14 H14 H 0 1 N N N N N N 13.847 -0.926 17.649 -3.167 -1.085 0.721  H14 A1AFR 45 
A1AFR H15 H15 H 0 1 N N N N N N 15.570 -0.539 17.321 -4.299 0.067  1.492  H15 A1AFR 46 
A1AFR H16 H16 H 0 1 N N N N N N 13.169 -0.386 20.427 -4.039 0.641  -2.623 H16 A1AFR 47 
A1AFR H17 H17 H 0 1 N N N N N N 14.569 0.340  21.286 -2.962 -0.680 -2.068 H17 A1AFR 48 
A1AFR H18 H18 H 0 1 N N N N N N 14.636 2.049  19.983 -5.962 -0.447 -1.883 H18 A1AFR 49 
A1AFR H19 H19 H 0 1 N N N N N N 12.946 1.584  19.588 -4.949 -1.912 -1.999 H19 A1AFR 50 
A1AFR H20 H20 H 0 1 N N N N N N 14.123 1.781  14.855 -7.755 -1.724 -0.720 H20 A1AFR 51 
A1AFR H21 H21 H 0 1 N N N N N N 15.154 0.459  15.501 -6.772 -3.203 -0.838 H21 A1AFR 52 
A1AFR H22 H22 H 0 1 N N N N N N 16.466 2.014  14.089 -7.572 -3.914 1.398  H22 A1AFR 53 
A1AFR H23 H23 H 0 1 N N N N N N 15.993 3.384  15.150 -8.556 -2.435 1.517  H23 A1AFR 54 
A1AFR H24 H24 H 0 1 N N N N N N 17.024 2.062  15.796 -8.936 -3.661 0.283  H24 A1AFR 55 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
A1AFR C0V C0M SING N N 1  
A1AFR C0M C0P SING N N 2  
A1AFR C0U O02 SING N N 3  
A1AFR O02 C0D SING N N 4  
A1AFR C0P O03 DOUB N N 5  
A1AFR C0P N07 SING N N 6  
A1AFR C0D C0R DOUB Y N 7  
A1AFR C0D C0C SING Y N 8  
A1AFR C0R C0J SING Y N 9  
A1AFR C0C C0E DOUB Y N 10 
A1AFR C0I N07 SING N N 11 
A1AFR C0I C0K SING N N 12 
A1AFR N07 C0T SING N N 13 
A1AFR C0J C0S SING N N 14 
A1AFR C0J C0O DOUB Y N 15 
A1AFR C0S C0H TRIP N N 16 
A1AFR C0E C0O SING Y N 17 
A1AFR C0E O01 SING N N 18 
A1AFR N09 C0G DOUB Y N 19 
A1AFR N09 N04 SING Y N 20 
A1AFR C0H C0G SING N N 21 
A1AFR C0N O01 SING N N 22 
A1AFR C0K N04 SING N N 23 
A1AFR C0K C0Q SING N N 24 
A1AFR C0T C0Q SING N N 25 
A1AFR C0G C0A SING Y N 26 
A1AFR N04 C0B SING Y N 27 
A1AFR C0A C0B DOUB Y N 28 
A1AFR C0A C0F SING Y N 29 
A1AFR C0B N08 SING Y N 30 
A1AFR N08 C0L DOUB Y N 31 
A1AFR C0F N05 SING N N 32 
A1AFR C0F N06 DOUB Y N 33 
A1AFR C0L N06 SING Y N 34 
A1AFR C0N H1  SING N N 35 
A1AFR C0N H2  SING N N 36 
A1AFR C0N H3  SING N N 37 
A1AFR C0O H4  SING N N 38 
A1AFR C0C H5  SING N N 39 
A1AFR C0U H6  SING N N 40 
A1AFR C0U H7  SING N N 41 
A1AFR C0U H8  SING N N 42 
A1AFR C0R H9  SING N N 43 
A1AFR N05 H10 SING N N 44 
A1AFR N05 H11 SING N N 45 
A1AFR C0L H12 SING N N 46 
A1AFR C0K H13 SING N N 47 
A1AFR C0I H14 SING N N 48 
A1AFR C0I H15 SING N N 49 
A1AFR C0Q H16 SING N N 50 
A1AFR C0Q H17 SING N N 51 
A1AFR C0T H18 SING N N 52 
A1AFR C0T H19 SING N N 53 
A1AFR C0M H20 SING N N 54 
A1AFR C0M H21 SING N N 55 
A1AFR C0V H22 SING N N 56 
A1AFR C0V H23 SING N N 57 
A1AFR C0V H24 SING N N 58 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
A1AFR SMILES           ACDLabs              12.01 "CCC(=O)N1CCC(C1)n1nc(C#Cc2cc(OC)cc(OC)c2)c2c(N)ncnc21"                                                                                                                       
A1AFR InChI            InChI                1.06  "InChI=1S/C22H24N6O3/c1-4-19(29)27-8-7-15(12-27)28-22-20(21(23)24-13-25-22)18(26-28)6-5-14-9-16(30-2)11-17(10-14)31-3/h9-11,13,15H,4,7-8,12H2,1-3H3,(H2,23,24,25)/t15-/m0/s1" 
A1AFR InChIKey         InChI                1.06  DZLNAZQOANZLHT-HNNXBMFYSA-N                                                                                                                                                   
A1AFR SMILES_CANONICAL CACTVS               3.385 "CCC(=O)N1CC[C@@H](C1)n2nc(C#Cc3cc(OC)cc(OC)c3)c4c(N)ncnc24"                                                                                                                  
A1AFR SMILES           CACTVS               3.385 "CCC(=O)N1CC[CH](C1)n2nc(C#Cc3cc(OC)cc(OC)c3)c4c(N)ncnc24"                                                                                                                    
A1AFR SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CCC(=O)N1CC[C@@H](C1)n2c3c(c(n2)C#Cc4cc(cc(c4)OC)OC)c(ncn3)N"                                                                                                                
A1AFR SMILES           "OpenEye OEToolkits" 2.0.7 "CCC(=O)N1CCC(C1)n2c3c(c(n2)C#Cc4cc(cc(c4)OC)OC)c(ncn3)N"                                                                                                                     
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
A1AFR "SYSTEMATIC NAME" ACDLabs              12.01 "1-[(3S)-3-{4-amino-3-[(3,5-dimethoxyphenyl)ethynyl]-1H-pyrazolo[3,4-d]pyrimidin-1-yl}pyrrolidin-1-yl]propan-1-one"   
A1AFR "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "1-[(3~{S})-3-[4-azanyl-3-[2-(3,5-dimethoxyphenyl)ethynyl]pyrazolo[3,4-d]pyrimidin-1-yl]pyrrolidin-1-yl]propan-1-one" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
A1AFR "Create component" 2024-02-23 RCSB 
A1AFR "Modify PCM"       2024-09-27 PDBE 
A1AFR "Initial release"  2025-01-01 RCSB 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            A1AFR 
_pdbx_chem_comp_pcm.modified_residue_id                CYS 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               C0V 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   SG 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
