data_D1R
# 
_chem_comp.id                                    D1R 
_chem_comp.name                                  "NALPHA-[(4-METHYLPIPERAZIN-1-YL)CARBONYL]-N-{(1S)-3-PHENYL-1-[2-(PHENYLSULFONYL)ETHYL]PROPYL}-L-PHENYLALANINAMIDE" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C32 H40 N4 O4 S" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2007-04-19 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   ? 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        576.749 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     D1R 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        "OpenEye OEToolkits" 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        ? 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  EBI 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
D1R C39  C39  C 0 1 N N N N N N 5.568  -11.235 -24.796 -0.949 -0.019 4.219  C39  D1R 1  
D1R C40  C40  C 0 1 N N N N N N 4.996  -12.319 -25.723 -1.273 -1.105 5.250  C40  D1R 2  
D1R N4   N4   N 0 1 N N N N N N 4.032  -11.635 -26.590 -1.954 -2.247 4.629  N4   D1R 3  
D1R C33  C33  C 0 1 N N N N N N 3.776  -12.375 -27.837 -2.284 -3.257 5.635  C33  D1R 4  
D1R C49  C49  C 0 1 N N N N N N 2.781  -11.475 -25.846 -1.110 -2.826 3.576  C49  D1R 5  
D1R C48  C48  C 0 1 N N N N N N 3.019  -10.737 -24.520 -0.816 -1.786 2.498  C48  D1R 6  
D1R N3   N3   N 0 1 N N N N N N 4.457  -10.441 -24.206 -0.235 -0.564 3.057  N3   D1R 7  
D1R C8   C8   C 0 1 N N N N N N 4.722  -9.437  -23.341 0.820  0.064  2.371  C8   D1R 8  
D1R O2   O2   O 0 1 N N N N N N 3.766  -8.816  -22.866 1.382  -0.446 1.396  O2   D1R 9  
D1R N1   N1   N 0 1 N N N N N N 5.980  -9.114  -23.003 1.190  1.313  2.857  N1   D1R 10 
D1R C9   C9   C 0 1 N N N N N N 6.198  -8.004  -22.060 2.251  2.089  2.255  C9   D1R 11 
D1R C10  C10  C 0 1 N N N N N N 7.687  -7.748  -21.709 2.050  3.596  2.453  C10  D1R 12 
D1R C11  C11  C 0 1 Y N N N N N 8.556  -8.977  -21.425 1.048  4.183  1.489  C11  D1R 13 
D1R C12  C12  C 0 1 Y N N N N N 9.879  -8.975  -21.879 1.485  4.669  0.267  C12  D1R 14 
D1R C13  C13  C 0 1 Y N N N N N 10.705 -10.080 -21.641 0.559  5.211  -0.624 C13  D1R 15 
D1R C14  C14  C 0 1 Y N N N N N 10.229 -11.185 -20.922 -0.792 5.261  -0.281 C14  D1R 16 
D1R C15  C15  C 0 1 Y N N N N N 8.911  -11.188 -20.460 -1.217 4.767  0.952  C15  D1R 17 
D1R C16  C16  C 0 1 Y N N N N N 8.077  -10.086 -20.707 -0.291 4.225  1.843  C16  D1R 18 
D1R C17  C17  C 0 1 N N N N N N 5.665  -6.756  -22.742 3.558  1.640  2.898  C17  D1R 19 
D1R O3   O3   O 0 1 N N N N N N 5.939  -6.518  -23.920 3.643  1.303  4.077  O3   D1R 20 
D1R N2   N2   N 0 1 N N N N N N 4.917  -5.966  -21.991 4.604  1.613  1.985  N2   D1R 21 
D1R C18  C18  C 0 1 N N N N N N 4.373  -4.726  -22.557 5.940  1.178  2.322  C18  D1R 22 
D1R C19  C19  C 0 1 N N N N N N 2.822  -4.729  -22.422 6.552  2.085  3.404  C19  D1R 23 
D1R C20  C20  C 0 1 N N N N N N 2.204  -5.710  -23.448 6.581  3.561  2.986  C20  D1R 24 
D1R C21  C21  C 0 1 Y N N N N N 0.664  -5.773  -23.440 7.128  4.438  4.084  C21  D1R 25 
D1R C22  C22  C 0 1 Y N N N N N -0.106 -4.667  -23.795 6.259  4.979  5.020  C22  D1R 26 
D1R C23  C23  C 0 1 Y N N N N N -1.505 -4.761  -23.790 6.765  5.790  6.036  C23  D1R 27 
D1R C24  C24  C 0 1 Y N N N N N -2.141 -5.959  -23.431 8.133  6.050  6.104  C24  D1R 28 
D1R C25  C25  C 0 1 Y N N N N N -1.377 -7.073  -23.084 8.996  5.498  5.157  C25  D1R 29 
D1R C26  C26  C 0 1 Y N N N N N 0.024  -6.970  -23.098 8.490  4.687  4.141  C26  D1R 30 
D1R C27  C27  C 0 1 N N N N N N 5.074  -3.529  -21.882 5.926  -0.285 2.800  C27  D1R 31 
D1R C28  C28  C 0 1 N N N N N N 4.678  -3.500  -20.397 5.313  -1.271 1.812  C28  D1R 32 
D1R S1   S1   S 0 1 N N N N N N 3.683  -2.054  -19.903 5.366  -2.940 2.382  S1   D1R 33 
D1R O4   O4   O 0 1 N N N N N N 2.539  -1.893  -20.851 4.505  -3.065 3.545  O4   D1R 34 
D1R O5   O5   O 0 1 N N N N N N 4.555  -0.860  -19.950 6.761  -3.340 2.459  O5   D1R 35 
D1R CAB  CAB  C 0 1 Y N N N N N 3.036  -2.338  -18.285 4.608  -3.864 1.078  CAB  D1R 36 
D1R CAA  CAA  C 0 1 Y N N N N N 1.846  -1.728  -17.894 5.397  -4.361 0.056  CAA  D1R 37 
D1R CAC  CAC  C 0 1 Y N N N N N 1.333  -1.963  -16.614 4.799  -5.089 -0.972 CAC  D1R 38 
D1R CAE  CAE  C 0 1 Y N N N N N 2.005  -2.808  -15.731 3.421  -5.308 -0.962 CAE  D1R 39 
D1R CAF  CAF  C 0 1 Y N N N N N 3.189  -3.428  -16.122 2.642  -4.799 0.077  CAF  D1R 40 
D1R CAD  CAD  C 0 1 Y N N N N N 3.701  -3.187  -17.399 3.240  -4.071 1.106  CAD  D1R 41 
D1R H391 1H39 H 0 0 N N N N N N 6.145  -11.711 -23.989 -1.870 0.443  3.842  H391 D1R 42 
D1R H392 2H39 H 0 0 N N N N N N 6.223  -10.569 -25.376 -0.367 0.755  4.723  H392 D1R 43 
D1R H401 1H40 H 0 0 N N N N N N 5.796  -12.782 -26.320 -0.345 -1.433 5.737  H401 D1R 44 
D1R H402 2H40 H 0 0 N N N N N N 4.520  -13.129 -25.151 -1.912 -0.667 6.026  H402 D1R 45 
D1R H331 1H33 H 0 0 N N N N N N 3.712  -11.668 -28.677 -3.217 -2.993 6.140  H331 D1R 46 
D1R H332 2H33 H 0 0 N N N N N N 4.597  -13.085 -28.017 -1.486 -3.323 6.380  H332 D1R 47 
D1R H333 3H33 H 0 0 N N N N N N 2.828  -12.925 -27.748 -2.404 -4.236 5.163  H333 D1R 48 
D1R H491 1H49 H 0 0 N N N N N N 2.074  -10.894 -26.456 -1.624 -3.676 3.111  H491 D1R 49 
D1R H492 2H49 H 0 0 N N N N N N 2.374  -12.473 -25.624 -0.168 -3.201 3.997  H492 D1R 50 
D1R H481 1H48 H 0 0 N N N N N N 2.485  -9.777  -24.572 -0.155 -2.219 1.740  H481 D1R 51 
D1R H482 2H48 H 0 0 N N N N N N 2.659  -11.406 -23.724 -1.741 -1.493 1.987  H482 D1R 52 
D1R HN1  HN1  H 0 1 N N N N N N 6.755  -9.618  -23.384 0.666  1.765  3.594  HN1  D1R 53 
D1R H9   H9   H 0 1 N N N N N N 5.694  -8.259  -21.116 2.266  1.827  1.191  H9   D1R 54 
D1R H101 1H10 H 0 0 N N N N N N 8.136  -7.228  -22.568 3.009  4.124  2.356  H101 D1R 55 
D1R H102 2H10 H 0 0 N N N N N N 7.670  -7.181  -20.767 1.708  3.806  3.475  H102 D1R 56 
D1R H12  H12  H 0 1 N N N N N N 10.264 -8.120  -22.414 2.536  4.635  -0.009 H12  D1R 57 
D1R H13  H13  H 0 1 N N N N N N 11.718 -10.081 -22.015 0.890  5.595  -1.585 H13  D1R 58 
D1R H14  H14  H 0 1 N N N N N N 10.876 -12.027 -20.727 -1.514 5.683  -0.975 H14  D1R 59 
D1R H15  H15  H 0 1 N N N N N N 8.533  -12.039 -19.912 -2.270 4.805  1.219  H15  D1R 60 
D1R H16  H16  H 0 1 N N N N N N 7.060  -10.091 -20.343 -0.632 3.843  2.802  H16  D1R 61 
D1R HN2  HN2  H 0 1 N N N N N N 4.723  -6.212  -21.041 4.420  1.915  1.033  HN2  D1R 62 
D1R H18  H18  H 0 1 N N N N N N 4.576  -4.642  -23.635 6.540  1.267  1.410  H18  D1R 63 
D1R H191 1H19 H 0 0 N N N N N N 2.546  -5.045  -21.405 7.571  1.750  3.639  H191 D1R 64 
D1R H192 2H19 H 0 0 N N N N N N 2.440  -3.716  -22.615 5.968  1.987  4.329  H192 D1R 65 
D1R H201 1H20 H 0 0 N N N N N N 2.520  -5.388  -24.451 7.190  3.696  2.084  H201 D1R 66 
D1R H202 2H20 H 0 0 N N N N N N 2.558  -6.714  -23.171 5.570  3.897  2.721  H202 D1R 67 
D1R H22  H22  H 0 1 N N N N N N 0.373  -3.740  -24.073 5.191  4.783  4.974  H22  D1R 68 
D1R H23  H23  H 0 1 N N N N N N -2.099 -3.902  -24.065 6.093  6.219  6.773  H23  D1R 69 
D1R H24  H24  H 0 1 N N N N N N -3.219 -6.018  -23.423 8.527  6.681  6.895  H24  D1R 70 
D1R H25  H25  H 0 1 N N N N N N -1.855 -8.001  -22.809 10.062 5.700  5.211  H25  D1R 71 
D1R H26  H26  H 0 1 N N N N N N 0.620  -7.833  -22.839 9.170  4.262  3.408  H26  D1R 72 
D1R H271 1H27 H 0 0 N N N N N N 6.165  -3.637  -21.974 6.957  -0.605 3.003  H271 D1R 73 
D1R H272 2H27 H 0 0 N N N N N N 4.768  -2.592  -22.370 5.382  -0.349 3.751  H272 D1R 74 
D1R H281 1H28 H 0 0 N N N N N N 4.084  -4.403  -20.190 4.270  -1.036 1.581  H281 D1R 75 
D1R H282 2H28 H 0 0 N N N N N N 5.615  -3.447  -19.823 5.879  -1.255 0.875  H282 D1R 76 
D1R HAA  HAA  H 0 1 N N N N N N 1.321  -1.076  -18.577 6.471  -4.197 0.038  HAA  D1R 77 
D1R HAC  HAC  H 0 1 N N N N N N 0.413  -1.488  -16.308 5.405  -5.485 -1.782 HAC  D1R 78 
D1R HAE  HAE  H 0 1 N N N N N N 1.606  -2.982  -14.742 2.956  -5.876 -1.762 HAE  D1R 79 
D1R HAF  HAF  H 0 1 N N N N N N 3.707  -4.090  -15.444 1.570  -4.971 0.086  HAF  D1R 80 
D1R HAD  HAD  H 0 1 N N N N N N 4.621  -3.663  -17.704 2.623  -3.678 1.909  HAD  D1R 81 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
D1R C39 C40  SING N N 1  
D1R C39 N3   SING N N 2  
D1R C39 H391 SING N N 3  
D1R C39 H392 SING N N 4  
D1R C40 N4   SING N N 5  
D1R C40 H401 SING N N 6  
D1R C40 H402 SING N N 7  
D1R N4  C33  SING N N 8  
D1R N4  C49  SING N N 9  
D1R C33 H331 SING N N 10 
D1R C33 H332 SING N N 11 
D1R C33 H333 SING N N 12 
D1R C49 C48  SING N N 13 
D1R C49 H491 SING N N 14 
D1R C49 H492 SING N N 15 
D1R C48 N3   SING N N 16 
D1R C48 H481 SING N N 17 
D1R C48 H482 SING N N 18 
D1R N3  C8   SING N N 19 
D1R C8  N1   SING N N 20 
D1R C8  O2   DOUB N N 21 
D1R N1  C9   SING N N 22 
D1R N1  HN1  SING N N 23 
D1R C9  C17  SING N N 24 
D1R C9  C10  SING N N 25 
D1R C9  H9   SING N N 26 
D1R C10 C11  SING N N 27 
D1R C10 H101 SING N N 28 
D1R C10 H102 SING N N 29 
D1R C11 C12  SING Y N 30 
D1R C11 C16  DOUB Y N 31 
D1R C12 C13  DOUB Y N 32 
D1R C12 H12  SING N N 33 
D1R C13 C14  SING Y N 34 
D1R C13 H13  SING N N 35 
D1R C14 C15  DOUB Y N 36 
D1R C14 H14  SING N N 37 
D1R C15 C16  SING Y N 38 
D1R C15 H15  SING N N 39 
D1R C16 H16  SING N N 40 
D1R C17 O3   DOUB N N 41 
D1R C17 N2   SING N N 42 
D1R N2  C18  SING N N 43 
D1R N2  HN2  SING N N 44 
D1R C18 C19  SING N N 45 
D1R C18 C27  SING N N 46 
D1R C18 H18  SING N N 47 
D1R C19 C20  SING N N 48 
D1R C19 H191 SING N N 49 
D1R C19 H192 SING N N 50 
D1R C20 C21  SING N N 51 
D1R C20 H201 SING N N 52 
D1R C20 H202 SING N N 53 
D1R C21 C22  SING Y N 54 
D1R C21 C26  DOUB Y N 55 
D1R C22 C23  DOUB Y N 56 
D1R C22 H22  SING N N 57 
D1R C23 C24  SING Y N 58 
D1R C23 H23  SING N N 59 
D1R C24 C25  DOUB Y N 60 
D1R C24 H24  SING N N 61 
D1R C25 C26  SING Y N 62 
D1R C25 H25  SING N N 63 
D1R C26 H26  SING N N 64 
D1R C27 C28  SING N N 65 
D1R C27 H271 SING N N 66 
D1R C27 H272 SING N N 67 
D1R C28 S1   SING N N 68 
D1R C28 H281 SING N N 69 
D1R C28 H282 SING N N 70 
D1R S1  O4   DOUB N N 71 
D1R S1  O5   DOUB N N 72 
D1R S1  CAB  SING N N 73 
D1R CAB CAA  DOUB Y N 74 
D1R CAB CAD  SING Y N 75 
D1R CAA CAC  SING Y N 76 
D1R CAA HAA  SING N N 77 
D1R CAC CAE  DOUB Y N 78 
D1R CAC HAC  SING N N 79 
D1R CAE CAF  SING Y N 80 
D1R CAE HAE  SING N N 81 
D1R CAF CAD  DOUB Y N 82 
D1R CAF HAF  SING N N 83 
D1R CAD HAD  SING N N 84 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
D1R SMILES           ACDLabs              10.04 "O=C(N1CCN(C)CC1)NC(C(=O)NC(CCS(=O)(=O)c2ccccc2)CCc3ccccc3)Cc4ccccc4"                                                                                                                                            
D1R SMILES_CANONICAL CACTVS               3.341 "CN1CCN(CC1)C(=O)N[C@@H](Cc2ccccc2)C(=O)N[C@@H](CCc3ccccc3)CC[S](=O)(=O)c4ccccc4"                                                                                                                                
D1R SMILES           CACTVS               3.341 "CN1CCN(CC1)C(=O)N[CH](Cc2ccccc2)C(=O)N[CH](CCc3ccccc3)CC[S](=O)(=O)c4ccccc4"                                                                                                                                    
D1R SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "CN1CCN(CC1)C(=O)N[C@@H](Cc2ccccc2)C(=O)N[C@@H](CCc3ccccc3)CCS(=O)(=O)c4ccccc4"                                                                                                                                  
D1R SMILES           "OpenEye OEToolkits" 1.5.0 "CN1CCN(CC1)C(=O)NC(Cc2ccccc2)C(=O)NC(CCc3ccccc3)CCS(=O)(=O)c4ccccc4"                                                                                                                                            
D1R InChI            InChI                1.03  "InChI=1S/C32H40N4O4S/c1-35-20-22-36(23-21-35)32(38)34-30(25-27-13-7-3-8-14-27)31(37)33-28(18-17-26-11-5-2-6-12-26)19-24-41(39,40)29-15-9-4-10-16-29/h2-16,28,30H,17-25H2,1H3,(H,33,37)(H,34,38)/t28-,30-/m0/s1" 
D1R InChIKey         InChI                1.03  VZSXPUDQSLKVIR-JDXGNMNLSA-N                                                                                                                                                                                      
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
D1R "SYSTEMATIC NAME" ACDLabs              10.04 "Nalpha-[(4-methylpiperazin-1-yl)carbonyl]-N-{(1S)-3-phenyl-1-[2-(phenylsulfonyl)ethyl]propyl}-L-phenylalaninamide"          
D1R "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "4-methyl-N-[(2S)-1-oxo-3-phenyl-1-[[(3S)-1-phenyl-5-(phenylsulfonyl)pentan-3-yl]amino]propan-2-yl]piperazine-1-carboxamide" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
D1R "Create component"  2007-04-19 EBI  
D1R "Modify descriptor" 2011-06-04 RCSB 
D1R "Modify PCM"        2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            D1R 
_pdbx_chem_comp_pcm.modified_residue_id                CYS 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               C27 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   SG 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
