data_LXR
# 
_chem_comp.id                                    LXR 
_chem_comp.name                                  "5'-O-[(S)-(2-amino-1H-imidazol-1-yl)(hydroxy)phosphoryl]adenosine" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C13 H17 N8 O6 P" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2022-03-09 
_chem_comp.pdbx_modified_date                    2023-03-10 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        412.298 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     LXR 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        7U8B 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
LXR C10 C1  C 0 1 Y N N 14.466 10.026 40.493 2.666  -0.924 -1.245 C10 LXR 1  
LXR C13 C2  C 0 1 Y N N 16.420 8.974  43.093 -5.954 -1.107 0.514  C13 LXR 2  
LXR C11 C3  C 0 1 Y N N 17.638 7.883  41.738 -4.003 -1.918 1.128  C11 LXR 3  
LXR C12 C4  C 0 1 Y N N 16.406 7.378  41.671 -4.981 -2.588 1.760  C12 LXR 4  
LXR N8  N1  N 0 1 N N N 15.971 9.838  43.998 -6.934 -0.348 -0.104 N8  LXR 5  
LXR N9  N2  N 0 1 Y N N 15.641 8.056  42.521 -6.162 -2.079 1.370  N9  LXR 6  
LXR N6  N3  N 0 1 Y N N 17.674 8.893  42.618 -4.612 -0.976 0.331  N6  LXR 7  
LXR P1  P1  P 0 1 N N N 19.232 9.814  42.970 -3.863 0.104  -0.651 P1  LXR 8  
LXR O2  O1  O 0 1 N N N 19.388 10.141 44.537 -3.671 -0.543 -2.112 O2  LXR 9  
LXR O1  O2  O 0 1 N N N 20.518 9.281  42.498 -4.687 1.328  -0.757 O1  LXR 10 
LXR O3  O3  O 0 1 N N N 19.200 11.317 42.357 -2.423 0.478  -0.036 O3  LXR 11 
LXR C1  C5  C 0 1 N N N 18.308 12.290 42.880 -1.569 1.474  -0.604 C1  LXR 12 
LXR C2  C6  C 0 1 N N R 17.382 12.809 41.768 -0.285 1.577  0.222  C2  LXR 13 
LXR O4  O4  O 0 1 N N N 16.718 11.758 40.998 0.520  0.390  0.050  O4  LXR 14 
LXR C3  C7  C 0 1 N N S 16.239 13.570 42.440 0.598  2.732  -0.299 C3  LXR 15 
LXR O5  O5  O 0 1 N N N 16.633 14.947 42.690 0.418  3.901  0.504  O5  LXR 16 
LXR C4  C8  C 0 1 N N R 15.045 13.421 41.459 2.040  2.195  -0.157 C4  LXR 17 
LXR O6  O6  O 0 1 N N N 14.762 14.580 40.678 2.795  3.018  0.735  O6  LXR 18 
LXR C5  C9  C 0 1 N N R 15.461 12.331 40.481 1.857  0.779  0.433  C5  LXR 19 
LXR N5  N4  N 0 1 Y N N 14.332 11.353 40.336 2.840  -0.144 -0.141 N5  LXR 20 
LXR N4  N5  N 0 1 Y N N 13.283 9.438  40.292 3.740  -1.623 -1.469 N4  LXR 21 
LXR C8  C10 C 0 1 Y N N 12.392 10.411 40.014 4.671  -1.334 -0.529 C8  LXR 22 
LXR C7  C11 C 0 1 Y N N 13.039 11.600 40.037 4.105  -0.381 0.335  C7  LXR 23 
LXR N3  N6  N 0 1 Y N N 12.355 12.747 39.792 4.824  0.074  1.355  N3  LXR 24 
LXR C6  C12 C 0 1 Y N N 10.963 12.716 39.500 6.051  -0.359 1.558  C6  LXR 25 
LXR N1  N7  N 0 1 Y N N 10.326 11.453 39.468 6.625  -1.253 0.774  N1  LXR 26 
LXR C9  C13 C 0 1 Y N N 11.069 10.355 39.727 5.983  -1.766 -0.272 C9  LXR 27 
LXR N7  N8  N 0 1 N N N 10.503 9.144  39.717 6.593  -2.702 -1.088 N7  LXR 28 
LXR H1  H1  H 0 1 N N N 15.384 9.515  40.742 1.767  -0.959 -1.843 H1  LXR 29 
LXR H2  H2  H 0 1 N N N 18.484 7.530  41.167 -2.940 -2.086 1.226  H2  LXR 30 
LXR H3  H3  H 0 1 N N N 16.086 6.563  41.039 -4.841 -3.397 2.463  H3  LXR 31 
LXR H4  H4  H 0 1 N N N 14.997 9.678  44.158 -7.870 -0.517 0.086  H4  LXR 32 
LXR H5  H5  H 0 1 N N N 16.474 9.716  44.854 -6.684 0.352  -0.726 H5  LXR 33 
LXR H6  H6  H 0 1 N N N 20.268 9.923  44.820 -3.139 -1.351 -2.118 H6  LXR 34 
LXR H7  H7  H 0 1 N N N 18.887 13.129 43.293 -1.320 1.197  -1.629 H7  LXR 35 
LXR H8  H8  H 0 1 N N N 17.701 11.836 43.677 -2.081 2.436  -0.602 H8  LXR 36 
LXR H9  H9  H 0 1 N N N 17.941 13.485 41.104 -0.524 1.726  1.275  H9  LXR 37 
LXR H10 H10 H 0 1 N N N 15.983 13.072 43.387 0.369  2.947  -1.342 H10 LXR 38 
LXR H11 H11 H 0 1 N N N 17.365 14.962 43.296 0.949  4.657  0.221  H11 LXR 39 
LXR H12 H12 H 0 1 N N N 14.155 13.096 42.018 2.526  2.143  -1.131 H12 LXR 40 
LXR H13 H13 H 0 1 N N N 14.497 15.291 41.250 2.889  3.934  0.440  H13 LXR 41 
LXR H14 H14 H 0 1 N N N 15.654 12.796 39.503 1.949  0.805  1.519  H14 LXR 42 
LXR H15 H15 H 0 1 N N N 10.412 13.625 39.309 6.608  0.031  2.396  H15 LXR 43 
LXR H16 H16 H 0 1 N N N 9.530  9.232  39.501 7.500  -2.992 -0.900 H16 LXR 44 
LXR H17 H17 H 0 1 N N N 10.947 8.574  39.026 6.114  -3.068 -1.848 H17 LXR 45 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
LXR N1  C6  DOUB Y N 1  
LXR N1  C9  SING Y N 2  
LXR C6  N3  SING Y N 3  
LXR N7  C9  SING N N 4  
LXR C9  C8  DOUB Y N 5  
LXR N3  C7  DOUB Y N 6  
LXR C8  C7  SING Y N 7  
LXR C8  N4  SING Y N 8  
LXR C7  N5  SING Y N 9  
LXR N4  C10 DOUB Y N 10 
LXR N5  C5  SING N N 11 
LXR N5  C10 SING Y N 12 
LXR C5  O4  SING N N 13 
LXR C5  C4  SING N N 14 
LXR O6  C4  SING N N 15 
LXR O4  C2  SING N N 16 
LXR C4  C3  SING N N 17 
LXR C12 C11 DOUB Y N 18 
LXR C12 N9  SING Y N 19 
LXR C11 N6  SING Y N 20 
LXR C2  C3  SING N N 21 
LXR C2  C1  SING N N 22 
LXR O3  C1  SING N N 23 
LXR O3  P1  SING N N 24 
LXR C3  O5  SING N N 25 
LXR O1  P1  DOUB N N 26 
LXR N9  C13 DOUB Y N 27 
LXR N6  P1  SING N N 28 
LXR N6  C13 SING Y N 29 
LXR P1  O2  SING N N 30 
LXR C13 N8  SING N N 31 
LXR C10 H1  SING N N 32 
LXR C11 H2  SING N N 33 
LXR C12 H3  SING N N 34 
LXR N8  H4  SING N N 35 
LXR N8  H5  SING N N 36 
LXR O2  H6  SING N N 37 
LXR C1  H7  SING N N 38 
LXR C1  H8  SING N N 39 
LXR C2  H9  SING N N 40 
LXR C3  H10 SING N N 41 
LXR O5  H11 SING N N 42 
LXR C4  H12 SING N N 43 
LXR O6  H13 SING N N 44 
LXR C5  H14 SING N N 45 
LXR C6  H15 SING N N 46 
LXR N7  H16 SING N N 47 
LXR N7  H17 SING N N 48 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
LXR SMILES           ACDLabs              12.01 "Nc1nccn1P(=O)(O)OCC1OC(n2cnc3c(N)ncnc32)C(O)C1O"                                                                                                                                             
LXR InChI            InChI                1.03  "InChI=1S/C13H17N8O6P/c14-10-7-11(18-4-17-10)20(5-19-7)12-9(23)8(22)6(27-12)3-26-28(24,25)21-2-1-16-13(21)15/h1-2,4-6,8-9,12,22-23H,3H2,(H2,15,16)(H,24,25)(H2,14,17,18)/t6-,8-,9-,12-/m1/s1" 
LXR InChIKey         InChI                1.03  VRUNWCWGNRYOCC-WOUKDFQISA-N                                                                                                                                                                   
LXR SMILES_CANONICAL CACTVS               3.385 "Nc1nccn1[P](O)(=O)OC[C@H]2O[C@H]([C@H](O)[C@@H]2O)n3cnc4c(N)ncnc34"                                                                                                                          
LXR SMILES           CACTVS               3.385 "Nc1nccn1[P](O)(=O)OC[CH]2O[CH]([CH](O)[CH]2O)n3cnc4c(N)ncnc34"                                                                                                                               
LXR SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1cn(c(n1)N)P(=O)(O)OC[C@@H]2[C@H]([C@H]([C@@H](O2)n3cnc4c3ncnc4N)O)O"                                                                                                                       
LXR SMILES           "OpenEye OEToolkits" 2.0.7 "c1cn(c(n1)N)P(=O)(O)OCC2C(C(C(O2)n3cnc4c3ncnc4N)O)O"                                                                                                                                         
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
LXR "SYSTEMATIC NAME" ACDLabs              12.01 "5'-O-[(S)-(2-amino-1H-imidazol-1-yl)(hydroxy)phosphoryl]adenosine"                                                            
LXR "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-(2-azanylimidazol-1-yl)phosphinic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
LXR "Create component" 2022-03-09 RCSB 
LXR "Initial release"  2023-03-15 RCSB 
# 
