data_S8R
# 
_chem_comp.id                                    S8R 
_chem_comp.name                                  "N-[4-({[(6R)-2-amino-5-formyl-4-hydroxy-5,6,7,8-tetrahydropteridin-6-yl]methyl}amino)benzoyl]-L-gamma-glutamyl-L-glutamic acid" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C25 H30 N8 O10" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-08-23 
_chem_comp.pdbx_modified_date                    2024-08-16 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        602.553 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     S8R 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8TQF 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
S8R C    C1  C 0 1 N N N N N N 14.787 13.331 9.514  0.889  3.387  0.920  C    S8R 1  
S8R O    O1  O 0 1 N N N N N N 13.700 13.135 9.934  1.153  4.017  1.927  O    S8R 2  
S8R CB1  C2  C 0 1 N N N N N N 14.963 10.128 9.479  4.207  2.623  -0.463 CB1  S8R 3  
S8R CB2  C3  C 0 1 N N N N N N 15.846 5.130  6.411  6.511  -3.035 -0.055 CB2  S8R 4  
S8R CG1  C4  C 0 1 N N N N N N 15.883 9.763  8.310  4.126  1.213  0.125  CG1  S8R 5  
S8R NG1  N1  N 0 1 N N N N N N 15.846 12.362 9.695  1.860  3.098  0.032  NG1  S8R 6  
S8R CG2  C5  C 0 1 N N N N N N 17.172 5.260  5.660  7.293  -2.502 1.147  CG2  S8R 7  
S8R NG2  N2  N 0 1 N N N N N N 15.666 7.371  7.364  5.184  -0.990 -0.255 NG2  S8R 8  
S8R CD1  C6  C 0 1 N N N N N N 15.243 8.761  7.346  5.084  0.308  -0.605 CD1  S8R 9  
S8R CD2  C7  C 0 1 N N N N N N 17.002 5.468  4.152  7.682  -3.649 2.043  CD2  S8R 10 
S8R C11  C8  C 0 1 Y N N N N N 15.122 14.584 8.713  -0.494 2.935  0.675  C11  S8R 11 
S8R C12  C9  C 0 1 Y N N N N N 16.452 14.916 8.518  -1.501 3.230  1.599  C12  S8R 12 
S8R C13  C10 C 0 1 Y N N N N N 16.775 16.037 7.775  -2.790 2.807  1.367  C13  S8R 13 
S8R C14  C11 C 0 1 Y N N N N N 15.756 16.805 7.232  -3.092 2.087  0.214  C14  S8R 14 
S8R C15  C12 C 0 1 Y N N N N N 14.428 16.469 7.417  -2.091 1.792  -0.707 C15  S8R 15 
S8R C16  C13 C 0 1 Y N N N N N 14.109 15.354 8.165  -0.801 2.217  -0.484 C16  S8R 16 
S8R C2   C14 C 0 1 Y N N N N N 11.067 20.916 6.205  -5.449 -4.101 0.258  C2   S8R 17 
S8R C4   C15 C 0 1 Y N N N N N 13.193 21.090 7.148  -6.170 -2.179 1.319  C4   S8R 18 
S8R C4A  C16 C 0 1 Y N N N N N 13.759 20.734 5.909  -6.173 -1.526 0.092  C4A  S8R 19 
S8R C5A  C17 C 0 1 N N N N N N 16.218 21.450 6.233  -7.222 0.431  0.988  C5A  S8R 20 
S8R C6   C18 C 0 1 N N R N N N 15.587 19.655 4.705  -6.205 0.559  -1.239 C6   S8R 21 
S8R C7   C19 C 0 1 N N N N N N 14.870 19.850 3.372  -6.522 -0.340 -2.442 C7   S8R 22 
S8R C8A  C20 C 0 1 Y N N N N N 12.883 20.473 4.841  -5.792 -2.234 -1.047 C8A  S8R 23 
S8R C9   C21 C 0 1 N N N N N N 15.273 18.211 5.258  -4.714 0.903  -1.229 C9   S8R 24 
S8R CA1  C22 C 0 1 N N R N N N 15.626 11.131 10.420 3.234  3.542  0.278  CA1  S8R 25 
S8R CA2  C23 C 0 1 N N S N N N 15.051 6.434  6.442  6.116  -1.870 -0.965 CA2  S8R 26 
S8R CT1  C24 C 0 1 N N N N N N 16.996 10.607 10.813 3.402  4.955  -0.217 CT1  S8R 27 
S8R CT2  C25 C 0 1 N N N N N N 13.615 6.151  6.878  5.454  -2.405 -2.208 CT2  S8R 28 
S8R N1   N3  N 0 1 Y N N N N N 11.568 20.574 5.025  -5.440 -3.510 -0.928 N1   S8R 29 
S8R N10  N4  N 0 1 N N N N N N 16.071 17.976 6.448  -4.395 1.661  -0.017 N10  S8R 30 
S8R N3   N5  N 0 1 Y N N N N N 11.863 21.173 7.249  -5.804 -3.458 1.361  N3   S8R 31 
S8R N5   N6  N 0 1 N N N N N N 15.190 20.610 5.642  -6.554 -0.176 -0.012 N5   S8R 32 
S8R N8   N7  N 0 1 N N N N N N 13.424 20.070 3.467  -5.784 -1.603 -2.284 N8   S8R 33 
S8R NA2  N8  N 0 1 N N N N N N 9.625  21.008 6.353  -5.082 -5.434 0.347  NA2  S8R 34 
S8R O11  O2  O 0 1 N N N N N N 18.023 11.277 10.521 2.469  5.533  -0.724 O11  S8R 35 
S8R O12  O3  O 0 1 N N N N N N 12.723 5.975  6.008  4.320  -2.085 -2.474 O12  S8R 36 
S8R O21  O4  O 0 1 N N N N N N 17.101 9.510  11.418 4.587  5.573  -0.095 O21  S8R 37 
S8R O22  O5  O 0 1 N N N N N N 13.318 6.091  8.101  6.124  -3.238 -3.020 O22  S8R 38 
S8R O4   O6  O 0 1 N N N N N N 13.990 21.361 8.259  -6.532 -1.526 2.451  O4   S8R 39 
S8R O5B  O7  O 0 1 N N N N N N 15.964 22.296 7.014  -7.613 1.572  0.852  O5B  S8R 40 
S8R OEB  O8  O 0 1 N N N N N N 14.405 9.110  6.583  5.766  0.747  -1.507 OEB  S8R 41 
S8R OEC  O9  O 0 1 N N N N N N 15.887 5.274  3.597  7.365  -4.778 1.750  OEC  S8R 42 
S8R OED  O10 O 0 1 N N N N N N 17.987 5.837  3.456  8.379  -3.418 3.166  OED  S8R 43 
S8R HB12 H1  H 0 0 N N N N N N 14.037 10.569 9.081  5.222  3.004  -0.353 HB12 S8R 44 
S8R HB11 H2  H 0 0 N N N N N N 14.721 9.215  10.043 3.944  2.591  -1.520 HB11 S8R 45 
S8R HB23 H3  H 0 0 N N N N N N 15.237 4.359  5.917  7.133  -3.736 -0.612 HB23 S8R 46 
S8R HB22 H4  H 0 0 N N N N N N 16.057 4.823  7.446  5.612  -3.544 0.293  HB22 S8R 47 
S8R HG13 H5  H 0 0 N N N N N N 16.126 10.680 7.754  4.389  1.244  1.183  HG13 S8R 48 
S8R HG12 H6  H 0 0 N N N N N N 16.807 9.323  8.713  3.111  0.831  0.015  HG12 S8R 49 
S8R HG11 H7  H 0 0 N N N N N N 16.750 12.548 9.310  1.649  2.596  -0.771 HG11 S8R 50 
S8R HG22 H8  H 0 0 N N N N N N 17.722 6.120  6.070  8.192  -1.993 0.798  HG22 S8R 51 
S8R HG23 H9  H 0 0 N N N N N N 17.755 4.341  5.821  6.671  -1.801 1.703  HG23 S8R 52 
S8R HG21 H10 H 0 0 N N N N N N 16.371 7.064  8.003  4.639  -1.342 0.466  HG21 S8R 53 
S8R H121 H11 H 0 0 N N N N N N 17.233 14.303 8.944  -1.268 3.788  2.494  H121 S8R 54 
S8R H131 H12 H 0 0 N N N N N N 17.808 16.311 7.620  -3.569 3.034  2.081  H131 S8R 55 
S8R H151 H13 H 0 0 N N N N N N 13.647 17.074 6.980  -2.328 1.233  -1.600 H151 S8R 56 
S8R H161 H14 H 0 0 N N N N N N 13.075 15.083 8.322  -0.026 1.991  -1.201 H161 S8R 57 
S8R H5A1 H15 H 0 0 N N N N N N 17.248 21.294 5.948  -7.411 -0.098 1.911  H5A1 S8R 58 
S8R H61  H16 H 0 1 N N N N N N 16.671 19.720 4.530  -6.793 1.475  -1.299 H61  S8R 59 
S8R H71  H17 H 0 1 N N N N N N 15.315 20.722 2.871  -7.592 -0.543 -2.478 H71  S8R 60 
S8R H72  H18 H 0 1 N N N N N N 15.038 18.951 2.761  -6.210 0.154  -3.362 H72  S8R 61 
S8R H92  H19 H 0 1 N N N N N N 14.205 18.137 5.510  -4.129 -0.017 -1.247 H92  S8R 62 
S8R H91  H20 H 0 1 N N N N N N 15.522 17.461 4.493  -4.473 1.503  -2.106 H91  S8R 63 
S8R HA11 H21 H 0 0 N N N N N N 15.003 11.291 11.312 3.442  3.504  1.347  HA11 S8R 64 
S8R HA21 H22 H 0 0 N N N N N N 15.036 6.863  5.429  7.008  -1.307 -1.242 HA21 S8R 65 
S8R H101 H23 H 0 0 N N N N N N 15.967 18.773 7.043  -5.093 1.865  0.625  H101 S8R 66 
S8R H81  H24 H 0 1 N N N N N N 13.184 20.795 2.821  -5.300 -1.988 -3.031 H81  S8R 67 
S8R HA22 H25 H 0 0 N N N N N N 9.185  20.785 5.483  -4.823 -5.920 -0.452 HA22 S8R 68 
S8R HA23 H26 H 0 0 N N N N N N 9.320  20.365 7.055  -5.083 -5.881 1.208  HA23 S8R 69 
S8R H1   H27 H 0 1 N N N N N N 18.018 9.326  11.584 4.647  6.479  -0.427 H1   S8R 70 
S8R H2   H28 H 0 1 N N N N N N 12.391 5.907  8.193  5.657  -3.555 -3.805 H2   S8R 71 
S8R H41  H29 H 0 1 N N N N N N 14.815 21.736 7.974  -7.457 -1.656 2.701  H41  S8R 72 
S8R H3   H30 H 0 1 N N N N N N 17.720 5.920  2.548  8.605  -4.186 3.708  H3   S8R 73 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
S8R C   O    DOUB N N 1  
S8R C   NG1  SING N N 2  
S8R C   C11  SING N N 3  
S8R CB1 CG1  SING N N 4  
S8R CB1 CA1  SING N N 5  
S8R CB2 CG2  SING N N 6  
S8R CB2 CA2  SING N N 7  
S8R CG1 CD1  SING N N 8  
S8R NG1 CA1  SING N N 9  
S8R CG2 CD2  SING N N 10 
S8R NG2 CD1  SING N N 11 
S8R NG2 CA2  SING N N 12 
S8R CD1 OEB  DOUB N N 13 
S8R CD2 OEC  DOUB N N 14 
S8R CD2 OED  SING N N 15 
S8R C11 C12  DOUB Y N 16 
S8R C11 C16  SING Y N 17 
S8R C12 C13  SING Y N 18 
S8R C13 C14  DOUB Y N 19 
S8R C14 C15  SING Y N 20 
S8R C14 N10  SING N N 21 
S8R C15 C16  DOUB Y N 22 
S8R C2  N1   DOUB Y N 23 
S8R C2  N3   SING Y N 24 
S8R C2  NA2  SING N N 25 
S8R C4  C4A  SING Y N 26 
S8R C4  N3   DOUB Y N 27 
S8R C4  O4   SING N N 28 
S8R C4A C8A  DOUB Y N 29 
S8R C4A N5   SING N N 30 
S8R C5A N5   SING N N 31 
S8R C5A O5B  DOUB N N 32 
S8R C6  C7   SING N N 33 
S8R C6  C9   SING N N 34 
S8R C6  N5   SING N N 35 
S8R C7  N8   SING N N 36 
S8R C8A N1   SING Y N 37 
S8R C8A N8   SING N N 38 
S8R C9  N10  SING N N 39 
S8R CA1 CT1  SING N N 40 
S8R CA2 CT2  SING N N 41 
S8R CT1 O11  DOUB N N 42 
S8R CT1 O21  SING N N 43 
S8R CT2 O12  DOUB N N 44 
S8R CT2 O22  SING N N 45 
S8R CB1 HB12 SING N N 46 
S8R CB1 HB11 SING N N 47 
S8R CB2 HB23 SING N N 48 
S8R CB2 HB22 SING N N 49 
S8R CG1 HG13 SING N N 50 
S8R CG1 HG12 SING N N 51 
S8R NG1 HG11 SING N N 52 
S8R CG2 HG22 SING N N 53 
S8R CG2 HG23 SING N N 54 
S8R NG2 HG21 SING N N 55 
S8R C12 H121 SING N N 56 
S8R C13 H131 SING N N 57 
S8R C15 H151 SING N N 58 
S8R C16 H161 SING N N 59 
S8R C5A H5A1 SING N N 60 
S8R C6  H61  SING N N 61 
S8R C7  H71  SING N N 62 
S8R C7  H72  SING N N 63 
S8R C9  H92  SING N N 64 
S8R C9  H91  SING N N 65 
S8R CA1 HA11 SING N N 66 
S8R CA2 HA21 SING N N 67 
S8R N10 H101 SING N N 68 
S8R N8  H81  SING N N 69 
S8R NA2 HA22 SING N N 70 
S8R NA2 HA23 SING N N 71 
S8R O21 H1   SING N N 72 
S8R O22 H2   SING N N 73 
S8R O4  H41  SING N N 74 
S8R OED H3   SING N N 75 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
S8R SMILES           ACDLabs              12.01 "O=C(O)C(CCC(=O)O)NC(=O)CCC(NC(=O)c1ccc(cc1)NCC1CNc2nc(N)nc(O)c2N1C=O)C(=O)O"                                                                                                                                                                                         
S8R InChI            InChI                1.06  "InChI=1S/C25H30N8O10/c26-25-31-20-19(22(39)32-25)33(11-34)14(10-28-20)9-27-13-3-1-12(2-4-13)21(38)30-16(24(42)43)5-7-17(35)29-15(23(40)41)6-8-18(36)37/h1-4,11,14-16,27H,5-10H2,(H,29,35)(H,30,38)(H,36,37)(H,40,41)(H,42,43)(H4,26,28,31,32,39)/t14-,15+,16+/m1/s1" 
S8R InChIKey         InChI                1.06  QZHOZGNCYBQAQZ-PMPSAXMXSA-N                                                                                                                                                                                                                                           
S8R SMILES_CANONICAL CACTVS               3.385 "Nc1nc(O)c2N(C=O)[C@H](CNc3ccc(cc3)C(=O)N[C@H](CCC(=O)N[C@@H](CCC(O)=O)C(O)=O)C(O)=O)CNc2n1"                                                                                                                                                                          
S8R SMILES           CACTVS               3.385 "Nc1nc(O)c2N(C=O)[CH](CNc3ccc(cc3)C(=O)N[CH](CCC(=O)N[CH](CCC(O)=O)C(O)=O)C(O)=O)CNc2n1"                                                                                                                                                                              
S8R SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1cc(ccc1C(=O)N[C@@H](CCC(=O)N[C@@H](CCC(=O)O)C(=O)O)C(=O)O)NC[C@H]2CNc3c(c(nc(n3)N)O)N2C=O"                                                                                                                                                                         
S8R SMILES           "OpenEye OEToolkits" 2.0.7 "c1cc(ccc1C(=O)NC(CCC(=O)NC(CCC(=O)O)C(=O)O)C(=O)O)NCC2CNc3c(c(nc(n3)N)O)N2C=O"                                                                                                                                                                                       
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
S8R "SYSTEMATIC NAME" ACDLabs              12.01 "N-[4-({[(6R)-2-amino-5-formyl-4-hydroxy-5,6,7,8-tetrahydropteridin-6-yl]methyl}amino)benzoyl]-L-gamma-glutamyl-L-glutamic acid"                                                                     
S8R "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(2~{S})-2-[[(4~{S})-4-[[4-[[(6~{S})-2-azanyl-5-methanoyl-4-oxidanyl-7,8-dihydro-6~{H}-pteridin-6-yl]methylamino]phenyl]carbonylamino]-5-oxidanyl-5-oxidanylidene-pentanoyl]amino]pentanedioic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
S8R "Create component" 2023-08-23 RCSB 
S8R "Initial release"  2024-08-21 RCSB 
# 
