data_W5R
# 
_chem_comp.id                                    W5R 
_chem_comp.name                                  "dimethyl 2,6-bis[2-(dimethylamino)ethyl]-1-methyl-4-[4-(trifluoromethyl)phenyl]-4~{H}-pyridine-3,5-dicarboxylate" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C25 H34 F3 N3 O4" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-05-03 
_chem_comp.pdbx_modified_date                    2023-07-07 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        497.550 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     W5R 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8OXU 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
W5R N2  N1  N 0 1 N N N -55.384 37.758 -75.346 5.133  2.501  -0.990 N2  W5R 1  
W5R C3  C1  C 0 1 Y N N -51.183 33.930 -72.476 -1.345 0.517  0.699  C3  W5R 2  
W5R C6  C2  C 0 1 N N N -50.870 35.434 -72.274 0.028  0.296  1.279  C6  W5R 3  
W5R C9  C3  C 0 1 N N N -49.557 36.477 -74.127 1.298  -1.520 0.156  C9  W5R 4  
W5R C12 C4  C 0 1 N N N -47.623 35.165 -69.890 -0.109 -3.598 3.793  C12 W5R 5  
W5R C14 C5  C 0 1 N N N -47.326 35.895 -75.155 0.741  -3.616 -1.046 C14 W5R 6  
W5R C17 C6  C 0 1 N N N -50.843 36.713 -76.249 2.520  -1.030 -1.911 C17 W5R 7  
W5R C23 C7  C 0 1 N N N -53.696 36.411 -69.542 0.528  4.849  0.468  C23 W5R 8  
W5R C19 C8  C 0 1 N N N -54.171 36.963 -75.119 4.197  1.579  -0.333 C19 W5R 9  
W5R C1  C9  C 0 1 Y N N -52.697 32.080 -72.273 -3.636 1.156  0.977  C1  W5R 10 
W5R N   N2  N 0 1 N N N -50.777 36.686 -74.784 1.880  -0.597 -0.666 N   W5R 11 
W5R C   C10 C 0 1 Y N N -51.756 31.208 -72.795 -3.865 0.922  -0.366 C   W5R 12 
W5R O   O1  O 0 1 N N N -47.305 36.283 -72.217 -1.284 -2.537 1.711  O   W5R 13 
W5R C10 C11 C 0 1 N N N -49.570 35.891 -72.898 0.415  -1.144 1.098  C10 W5R 14 
W5R C11 C12 C 0 1 N N N -48.382 35.781 -72.023 -0.161 -2.126 1.937  C11 W5R 15 
W5R C13 C13 C 0 1 N N N -48.330 36.989 -74.821 1.650  -2.977 0.006  C13 W5R 16 
W5R C15 C14 C 0 1 N N N -45.870 37.842 -75.176 0.087  -5.737 -2.013 C15 W5R 17 
W5R C16 C15 C 0 1 N N N -45.071 35.783 -74.261 2.433  -5.196 -1.753 C16 W5R 18 
W5R C18 C16 C 0 1 N N N -53.000 37.768 -74.566 2.827  1.676  -1.007 C18 W5R 19 
W5R C2  C17 C 0 1 Y N N -52.419 33.432 -72.116 -2.376 0.954  1.509  C2  W5R 20 
W5R C20 C18 C 0 1 N N N -56.217 37.821 -74.149 4.735  3.898  -0.773 C20 W5R 21 
W5R C21 C19 C 0 1 N N N -55.052 39.109 -75.788 6.509  2.269  -0.532 C21 W5R 22 
W5R C22 C20 C 0 1 N N N -53.090 36.533 -71.815 1.028  2.576  0.913  C22 W5R 23 
W5R C24 C21 C 0 1 N N N -52.088 29.769 -73.004 -5.238 1.143  -0.946 C24 W5R 24 
W5R C4  C22 C 0 1 Y N N -50.224 33.074 -72.992 -1.573 0.287  -0.645 C4  W5R 25 
W5R C5  C23 C 0 1 Y N N -50.515 31.725 -73.146 -2.832 0.491  -1.178 C5  W5R 26 
W5R C7  C24 C 0 1 N N N -51.994 36.310 -72.778 1.008  1.201  0.588  C7  W5R 27 
W5R C8  C25 C 0 1 N N N -51.933 36.892 -74.010 1.867  0.730  -0.333 C8  W5R 28 
W5R F   F1  F 0 1 N N N -51.255 28.942 -72.385 -6.203 0.906  0.038  F   W5R 29 
W5R F1  F2  F 0 1 N N N -53.303 29.449 -72.559 -5.346 2.463  -1.398 F1  W5R 30 
W5R F2  F3  F 0 1 N N N -52.064 29.413 -74.287 -5.438 0.266  -2.017 F2  W5R 31 
W5R N1  N3  N 0 1 N N N -45.941 36.384 -75.269 1.085  -5.036 -1.193 N1  W5R 32 
W5R O1  O2  O 0 1 N N N -48.647 35.102 -70.911 0.535  -2.608 2.989  O1  W5R 33 
W5R O2  O3  O 0 1 N N N -54.215 36.880 -72.073 1.548  2.949  1.949  O2  W5R 34 
W5R O3  O4  O 0 1 N N N -52.690 36.270 -70.572 0.471  3.476  0.076  O3  W5R 35 
W5R H2  H2  H 0 1 N N N -50.788 35.600 -71.190 0.010  0.532  2.343  H2  W5R 36 
W5R H3  H3  H 0 1 N N N -47.938 34.574 -69.017 0.558  -3.898 4.602  H3  W5R 37 
W5R H4  H4  H 0 1 N N N -46.682 34.757 -70.289 -1.026 -3.185 4.214  H4  W5R 38 
W5R H5  H5  H 0 1 N N N -47.470 36.212 -69.588 -0.349 -4.465 3.179  H5  W5R 39 
W5R H6  H6  H 0 1 N N N -47.614 35.439 -76.113 -0.299 -3.524 -0.732 H6  W5R 40 
W5R H7  H7  H 0 1 N N N -47.363 35.135 -74.361 0.878  -3.108 -2.001 H7  W5R 41 
W5R H8  H8  H 0 1 N N N -51.881 36.888 -76.567 1.788  -1.021 -2.718 H8  W5R 42 
W5R H9  H9  H 0 1 N N N -50.202 37.522 -76.630 3.338  -0.352 -2.154 H9  W5R 43 
W5R H10 H10 H 0 1 N N N -50.495 35.749 -76.649 2.910  -2.040 -1.786 H10 W5R 44 
W5R H11 H11 H 0 1 N N N -53.256 36.170 -68.563 0.046  5.464  -0.292 H11 W5R 45 
W5R H12 H12 H 0 1 N N N -54.068 37.446 -69.532 0.012  4.977  1.419  H12 W5R 46 
W5R H13 H13 H 0 1 N N N -54.530 35.724 -69.748 1.569  5.154  0.575  H13 W5R 47 
W5R H14 H14 H 0 1 N N N -54.410 36.163 -74.403 4.572  0.559  -0.417 H14 W5R 48 
W5R H15 H15 H 0 1 N N N -53.864 36.518 -76.077 4.103  1.845  0.720  H15 W5R 49 
W5R H16 H16 H 0 1 N N N -53.666 31.701 -71.982 -4.441 1.497  1.611  H16 W5R 50 
W5R H17 H17 H 0 1 N N N -47.840 37.724 -74.166 2.690  -3.069 -0.309 H17 W5R 51 
W5R H18 H18 H 0 1 N N N -48.637 37.479 -75.757 1.513  -3.485 0.960  H18 W5R 52 
W5R H19 H19 H 0 1 N N N -44.822 38.165 -75.265 0.047  -5.283 -3.003 H19 W5R 53 
W5R H20 H20 H 0 1 N N N -46.462 38.290 -75.987 0.366  -6.787 -2.106 H20 W5R 54 
W5R H21 H21 H 0 1 N N N -46.272 38.167 -74.205 -0.891 -5.661 -1.539 H21 W5R 55 
W5R H22 H22 H 0 1 N N N -45.127 34.687 -74.334 2.459  -4.785 -2.763 H22 W5R 56 
W5R H23 H23 H 0 1 N N N -44.034 36.109 -74.430 3.152  -4.668 -1.127 H23 W5R 57 
W5R H24 H24 H 0 1 N N N -45.396 36.101 -73.259 2.690  -6.255 -1.786 H24 W5R 58 
W5R H25 H25 H 0 1 N N N -52.573 38.376 -75.377 2.452  2.696  -0.923 H25 W5R 59 
W5R H26 H26 H 0 1 N N N -53.369 38.428 -73.767 2.921  1.409  -2.060 H26 W5R 60 
W5R H27 H27 H 0 1 N N N -53.171 34.094 -71.712 -2.197 1.137  2.559  H27 W5R 61 
W5R H28 H28 H 0 1 N N N -56.465 36.801 -73.820 4.726  4.112  0.296  H28 W5R 62 
W5R H29 H29 H 0 1 N N N -55.670 38.342 -73.349 5.445  4.560  -1.270 H29 W5R 63 
W5R H30 H30 H 0 1 N N N -57.144 38.368 -74.376 3.738  4.060  -1.184 H30 W5R 64 
W5R H31 H31 H 0 1 N N N -55.978 39.680 -75.950 6.803  1.246  -0.768 H31 W5R 65 
W5R H32 H32 H 0 1 N N N -54.444 39.607 -75.019 7.181  2.964  -1.034 H32 W5R 66 
W5R H33 H33 H 0 1 N N N -54.484 39.058 -76.729 6.565  2.423  0.545  H33 W5R 67 
W5R H34 H34 H 0 1 N N N -49.253 33.454 -73.274 -0.766 -0.050 -1.280 H34 W5R 68 
W5R H35 H35 H 0 1 N N N -49.761 31.064 -73.547 -3.010 0.311  -2.228 H35 W5R 69 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
W5R C17 N   SING N N 1  
W5R C21 N2  SING N N 2  
W5R N2  C19 SING N N 3  
W5R N2  C20 SING N N 4  
W5R N1  C15 SING N N 5  
W5R N1  C14 SING N N 6  
W5R N1  C16 SING N N 7  
W5R C14 C13 SING N N 8  
W5R C19 C18 SING N N 9  
W5R C13 C9  SING N N 10 
W5R N   C9  SING N N 11 
W5R N   C8  SING N N 12 
W5R C18 C8  SING N N 13 
W5R F2  C24 SING N N 14 
W5R C9  C10 DOUB N N 15 
W5R C8  C7  DOUB N N 16 
W5R C5  C4  DOUB Y N 17 
W5R C5  C   SING Y N 18 
W5R C24 C   SING N N 19 
W5R C24 F1  SING N N 20 
W5R C24 F   SING N N 21 
W5R C4  C3  SING Y N 22 
W5R C10 C6  SING N N 23 
W5R C10 C11 SING N N 24 
W5R C   C1  DOUB Y N 25 
W5R C7  C6  SING N N 26 
W5R C7  C22 SING N N 27 
W5R C3  C6  SING N N 28 
W5R C3  C2  DOUB Y N 29 
W5R C1  C2  SING Y N 30 
W5R O   C11 DOUB N N 31 
W5R O2  C22 DOUB N N 32 
W5R C11 O1  SING N N 33 
W5R C22 O3  SING N N 34 
W5R O1  C12 SING N N 35 
W5R O3  C23 SING N N 36 
W5R C6  H2  SING N N 37 
W5R C12 H3  SING N N 38 
W5R C12 H4  SING N N 39 
W5R C12 H5  SING N N 40 
W5R C14 H6  SING N N 41 
W5R C14 H7  SING N N 42 
W5R C17 H8  SING N N 43 
W5R C17 H9  SING N N 44 
W5R C17 H10 SING N N 45 
W5R C23 H11 SING N N 46 
W5R C23 H12 SING N N 47 
W5R C23 H13 SING N N 48 
W5R C19 H14 SING N N 49 
W5R C19 H15 SING N N 50 
W5R C1  H16 SING N N 51 
W5R C13 H17 SING N N 52 
W5R C13 H18 SING N N 53 
W5R C15 H19 SING N N 54 
W5R C15 H20 SING N N 55 
W5R C15 H21 SING N N 56 
W5R C16 H22 SING N N 57 
W5R C16 H23 SING N N 58 
W5R C16 H24 SING N N 59 
W5R C18 H25 SING N N 60 
W5R C18 H26 SING N N 61 
W5R C2  H27 SING N N 62 
W5R C20 H28 SING N N 63 
W5R C20 H29 SING N N 64 
W5R C20 H30 SING N N 65 
W5R C21 H31 SING N N 66 
W5R C21 H32 SING N N 67 
W5R C21 H33 SING N N 68 
W5R C4  H34 SING N N 69 
W5R C5  H35 SING N N 70 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
W5R InChI            InChI                1.06  "InChI=1S/C25H34F3N3O4/c1-29(2)14-12-18-21(23(32)34-6)20(16-8-10-17(11-9-16)25(26,27)28)22(24(33)35-7)19(31(18)5)13-15-30(3)4/h8-11,20H,12-15H2,1-7H3" 
W5R InChIKey         InChI                1.06  VUSSPBFUEJHDJC-UHFFFAOYSA-N                                                                                                                            
W5R SMILES_CANONICAL CACTVS               3.385 "COC(=O)C1=C(CCN(C)C)N(C)C(=C(C1c2ccc(cc2)C(F)(F)F)C(=O)OC)CCN(C)C"                                                                                    
W5R SMILES           CACTVS               3.385 "COC(=O)C1=C(CCN(C)C)N(C)C(=C(C1c2ccc(cc2)C(F)(F)F)C(=O)OC)CCN(C)C"                                                                                    
W5R SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CN1C(=C(C(C(=C1CCN(C)C)C(=O)OC)c2ccc(cc2)C(F)(F)F)C(=O)OC)CCN(C)C"                                                                                    
W5R SMILES           "OpenEye OEToolkits" 2.0.7 "CN1C(=C(C(C(=C1CCN(C)C)C(=O)OC)c2ccc(cc2)C(F)(F)F)C(=O)OC)CCN(C)C"                                                                                    
# 
_pdbx_chem_comp_identifier.comp_id           W5R 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "dimethyl 2,6-bis[2-(dimethylamino)ethyl]-1-methyl-4-[4-(trifluoromethyl)phenyl]-4~{H}-pyridine-3,5-dicarboxylate" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
W5R "Create component" 2023-05-03 PDBE 
W5R "Initial release"  2023-07-12 RCSB 
# 
