data_X3R
# 
_chem_comp.id                                    X3R 
_chem_comp.name                                  "(2S)-2-cyclopropyl-2-({(4S,11aM)-2-[(4S)-2-oxo-4-(trifluoromethyl)-1,3-oxazolidin-3-yl]-5,6-dihydroimidazo[1,2-d][1,4]benzoxazepin-9-yl}amino)acetamide" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C20 H20 F3 N5 O4" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2022-10-26 
_chem_comp.pdbx_modified_date                    2022-11-25 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        451.399 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     X3R 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8EXU 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
X3R C4  C1  C 0 1 Y N N -15.976 15.303 30.086 -1.371 1.158  -1.002 C4  X3R 1  
X3R C5  C2  C 0 1 Y N N -16.658 16.083 31.004 -2.733 1.003  -1.145 C5  X3R 2  
X3R C6  C3  C 0 1 Y N N -17.934 15.708 31.437 -3.434 0.188  -0.262 C6  X3R 3  
X3R C11 C4  C 0 1 N N N -21.532 16.728 34.900 -6.869 1.168  1.592  C11 X3R 4  
X3R C8  C5  C 0 1 N N S -19.939 16.175 32.906 -5.555 -0.823 0.519  C8  X3R 5  
X3R C10 C6  C 0 1 N N N -20.297 17.101 34.078 -6.898 -0.170 0.852  C10 X3R 6  
X3R C12 C7  C 0 1 N N N -20.135 16.576 35.509 -7.259 1.120  0.113  C12 X3R 7  
X3R C13 C8  C 0 1 N N N -20.962 16.319 31.814 -5.794 -2.166 -0.121 C13 X3R 8  
X3R C3  C9  C 0 1 Y N N -16.547 14.073 29.623 -0.707 0.511  0.060  C3  X3R 9  
X3R C1  C10 C 0 1 Y N N -18.509 14.523 30.960 -2.770 -0.474 0.766  C1  X3R 10 
X3R C2  C11 C 0 1 Y N N -17.835 13.733 30.050 -1.408 -0.314 0.928  C2  X3R 11 
X3R N7  N1  N 0 1 N N N -18.602 16.510 32.377 -4.812 0.034  -0.408 N7  X3R 12 
X3R O14 O1  O 0 1 N N N -21.836 15.479 31.722 -5.715 -2.287 -1.325 O14 X3R 13 
X3R N15 N2  N 0 1 N N N -20.870 17.347 30.936 -6.096 -3.234 0.645  N15 X3R 14 
X3R O16 O2  O 0 1 N N N -14.758 15.721 29.710 -0.632 1.874  -1.879 O16 X3R 15 
X3R C17 C12 C 0 1 N N N -14.315 15.706 28.355 -0.192 3.192  -1.553 C17 X3R 16 
X3R C18 C13 C 0 1 N N N -13.720 14.333 28.077 0.368  3.239  -0.129 C18 X3R 17 
X3R N19 N3  N 0 1 Y N N -14.768 13.348 27.861 1.219  2.076  0.116  N19 X3R 18 
X3R C20 C14 C 0 1 Y N N -15.954 13.188 28.572 0.734  0.794  0.221  C20 X3R 19 
X3R N21 N4  N 0 1 Y N N -16.566 12.147 28.056 1.731  -0.011 0.457  N21 X3R 20 
X3R C22 C15 C 0 1 Y N N -15.833 11.564 27.095 2.872  0.700  0.503  C22 X3R 21 
X3R C23 C16 C 0 1 Y N N -14.711 12.314 26.959 2.571  2.006  0.289  C23 X3R 22 
X3R N24 N5  N 0 1 N N N -16.262 10.442 26.338 4.157  0.180  0.733  N24 X3R 23 
X3R C25 C17 C 0 1 N N S -17.460 9.639  26.663 5.128  -0.191 -0.307 C25 X3R 24 
X3R C27 C18 C 0 1 N N N -17.702 8.824  25.376 6.346  -0.694 0.491  C27 X3R 25 
X3R O28 O3  O 0 1 N N N -16.428 8.919  24.681 5.938  -0.555 1.883  O28 X3R 26 
X3R C29 C19 C 0 1 N N N -15.748 9.965  25.176 4.699  -0.054 1.936  C29 X3R 27 
X3R O30 O4  O 0 1 N N N -14.747 10.401 24.626 4.115  0.163  2.980  O30 X3R 28 
X3R C31 C20 C 0 1 N N N -17.226 8.728  27.883 4.568  -1.306 -1.193 C31 X3R 29 
X3R F32 F1  F 0 1 N N N -16.449 7.603  27.572 5.552  -1.722 -2.097 F32 X3R 30 
X3R F33 F2  F 0 1 N N N -16.608 9.412  28.929 4.183  -2.387 -0.393 F33 X3R 31 
X3R F34 F3  F 0 1 N N N -18.453 8.312  28.372 3.458  -0.828 -1.898 F34 X3R 32 
X3R H1  H1  H 0 1 N N N -16.203 16.984 31.387 -3.256 1.514  -1.941 H1  X3R 33 
X3R H2  H2  H 0 1 N N N -22.208 17.515 35.265 -7.661 1.361  2.316  H2  X3R 34 
X3R H3  H3  H 0 1 N N N -22.118 15.835 34.638 -5.893 1.584  1.842  H3  X3R 35 
X3R H9  H4  H 0 1 N N N -19.941 15.135 33.266 -4.978 -0.954 1.434  H9  X3R 36 
X3R H4  H5  H 0 1 N N N -20.114 18.175 33.926 -7.709 -0.859 1.089  H4  X3R 37 
X3R H5  H6  H 0 1 N N N -19.717 15.574 35.683 -8.307 1.281  -0.136 H5  X3R 38 
X3R H6  H7  H 0 1 N N N -19.807 17.255 36.310 -6.539 1.504  -0.609 H6  X3R 39 
X3R H7  H8  H 0 1 N N N -19.487 14.225 31.307 -3.321 -1.115 1.438  H7  X3R 40 
X3R H8  H9  H 0 1 N N N -18.308 12.842 29.663 -0.891 -0.828 1.725  H8  X3R 41 
X3R H10 H10 H 0 1 N N N -17.997 16.568 33.171 -5.279 0.494  -1.123 H10 X3R 42 
X3R H11 H11 H 0 1 N N N -21.531 17.428 30.190 -6.089 -3.154 1.612  H11 X3R 43 
X3R H12 H12 H 0 1 N N N -20.141 18.025 31.034 -6.321 -4.081 0.229  H12 X3R 44 
X3R H13 H13 H 0 1 N N N -13.552 16.483 28.202 0.584  3.496  -2.255 H13 X3R 45 
X3R H14 H14 H 0 1 N N N -15.165 15.889 27.681 -1.034 3.881  -1.629 H14 X3R 46 
X3R H15 H15 H 0 1 N N N -13.108 14.025 28.937 0.955  4.149  -0.001 H15 X3R 47 
X3R H16 H16 H 0 1 N N N -13.088 14.389 27.179 -0.456 3.238  0.585  H16 X3R 48 
X3R H17 H17 H 0 1 N N N -13.909 12.129 26.260 3.267  2.830  0.260  H17 X3R 49 
X3R H26 H18 H 0 1 N N N -18.323 10.295 26.852 5.395  0.678  -0.910 H26 X3R 50 
X3R H18 H19 H 0 1 N N N -18.513 9.264  24.777 6.553  -1.738 0.256  H18 X3R 51 
X3R H19 H20 H 0 1 N N N -17.946 7.778  25.611 7.221  -0.077 0.284  H19 X3R 52 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
X3R O30 C29 DOUB N N 1  
X3R O28 C29 SING N N 2  
X3R O28 C27 SING N N 3  
X3R C29 N24 SING N N 4  
X3R C27 C25 SING N N 5  
X3R N24 C25 SING N N 6  
X3R N24 C22 SING N N 7  
X3R C25 C31 SING N N 8  
X3R C23 C22 DOUB Y N 9  
X3R C23 N19 SING Y N 10 
X3R C22 N21 SING Y N 11 
X3R F32 C31 SING N N 12 
X3R N19 C18 SING N N 13 
X3R N19 C20 SING Y N 14 
X3R C31 F34 SING N N 15 
X3R C31 F33 SING N N 16 
X3R N21 C20 DOUB Y N 17 
X3R C18 C17 SING N N 18 
X3R C17 O16 SING N N 19 
X3R C20 C3  SING N N 20 
X3R C3  C2  DOUB Y N 21 
X3R C3  C4  SING Y N 22 
X3R O16 C4  SING N N 23 
X3R C2  C1  SING Y N 24 
X3R C4  C5  DOUB Y N 25 
X3R N15 C13 SING N N 26 
X3R C1  C6  DOUB Y N 27 
X3R C5  C6  SING Y N 28 
X3R C6  N7  SING N N 29 
X3R O14 C13 DOUB N N 30 
X3R C13 C8  SING N N 31 
X3R N7  C8  SING N N 32 
X3R C8  C10 SING N N 33 
X3R C10 C11 SING N N 34 
X3R C10 C12 SING N N 35 
X3R C11 C12 SING N N 36 
X3R C5  H1  SING N N 37 
X3R C11 H2  SING N N 38 
X3R C11 H3  SING N N 39 
X3R C8  H9  SING N N 40 
X3R C10 H4  SING N N 41 
X3R C12 H5  SING N N 42 
X3R C12 H6  SING N N 43 
X3R C1  H7  SING N N 44 
X3R C2  H8  SING N N 45 
X3R N7  H10 SING N N 46 
X3R N15 H11 SING N N 47 
X3R N15 H12 SING N N 48 
X3R C17 H13 SING N N 49 
X3R C17 H14 SING N N 50 
X3R C18 H15 SING N N 51 
X3R C18 H16 SING N N 52 
X3R C23 H17 SING N N 53 
X3R C25 H26 SING N N 54 
X3R C27 H18 SING N N 55 
X3R C27 H19 SING N N 56 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
X3R SMILES           ACDLabs              12.01 "FC(F)(F)C1COC(=O)N1c1nc2c3ccc(NC(C(N)=O)C4CC4)cc3OCCn2c1"                                                                                                                                 
X3R InChI            InChI                1.06  "InChI=1S/C20H20F3N5O4/c21-20(22,23)14-9-32-19(30)28(14)15-8-27-5-6-31-13-7-11(3-4-12(13)18(27)26-15)25-16(17(24)29)10-1-2-10/h3-4,7-8,10,14,16,25H,1-2,5-6,9H2,(H2,24,29)/t14-,16-/m0/s1" 
X3R InChIKey         InChI                1.06  NZDUMFRYZCPIIG-HOCLYGCPSA-N                                                                                                                                                                
X3R SMILES_CANONICAL CACTVS               3.385 "NC(=O)[C@@H](Nc1ccc2c(OCCn3cc(nc23)N4[C@@H](COC4=O)C(F)(F)F)c1)C5CC5"                                                                                                                     
X3R SMILES           CACTVS               3.385 "NC(=O)[CH](Nc1ccc2c(OCCn3cc(nc23)N4[CH](COC4=O)C(F)(F)F)c1)C5CC5"                                                                                                                         
X3R SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1cc-2c(cc1N[C@@H](C3CC3)C(=O)N)OCCn4c2nc(c4)N5[C@@H](COC5=O)C(F)(F)F"                                                                                                                    
X3R SMILES           "OpenEye OEToolkits" 2.0.7 "c1cc-2c(cc1NC(C3CC3)C(=O)N)OCCn4c2nc(c4)N5C(COC5=O)C(F)(F)F"                                                                                                                              
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
X3R "SYSTEMATIC NAME" ACDLabs              12.01 "(2S)-2-cyclopropyl-2-({(4S,11aM)-2-[(4S)-2-oxo-4-(trifluoromethyl)-1,3-oxazolidin-3-yl]-5,6-dihydroimidazo[1,2-d][1,4]benzoxazepin-9-yl}amino)acetamide"        
X3R "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(2~{S})-2-cyclopropyl-2-[[2-[(4~{S})-2-oxidanylidene-4-(trifluoromethyl)-1,3-oxazolidin-3-yl]-5,6-dihydroimidazo[1,2-d][1,4]benzoxazepin-9-yl]amino]ethanamide" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
X3R "Create component" 2022-10-26 RCSB 
X3R "Initial release"  2022-11-30 RCSB 
# 
