data_YAR
# 
_chem_comp.id                                    YAR 
_chem_comp.name                                  "(2E)-4-(ethylsulfanyl)-2-{[(Z)-{3-hydroxy-2-methyl-5-[(phosphonooxy)methyl]pyridin-4(1H)-ylidene}methyl]imino}butanoic acid" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C14 H21 N2 O7 P S" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-11-29 
_chem_comp.pdbx_modified_date                    2023-12-08 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        392.365 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     YAR 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8V4A 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
YAR N1  N1  N 0 1 N N N N N N 5.959  34.832 16.236 -2.339 0.996  0.138  N1  YAR 1  
YAR C4  C1  C 0 1 N N N N N N 7.438  34.544 18.229 -2.605 -1.320 0.911  C4  YAR 2  
YAR C5  C2  C 0 1 N N N N N N 6.619  35.119 19.406 -2.241 -2.178 -0.302 C5  YAR 3  
YAR C7  C3  C 0 1 N N N N N N 4.634  33.233 20.533 -1.206 -4.629 -1.293 C7  YAR 4  
YAR C10 C4  C 0 1 N N N N N N 3.079  36.343 12.140 -0.307 5.631  -0.553 C10 YAR 5  
YAR C13 C5  C 0 1 N N N N N N 6.534  35.917 15.706 -1.036 0.798  0.136  C13 YAR 6  
YAR C15 C6  C 0 1 N N N N N N 7.328  38.675 15.279 1.819  0.311  0.141  C15 YAR 7  
YAR C11 C7  C 0 1 N N N N N N 4.817  36.151 13.912 -0.660 3.204  -0.202 C11 YAR 8  
YAR C12 C8  C 0 1 N N N N N N 5.869  36.693 14.703 -0.157 1.889  -0.033 C12 YAR 9  
YAR C14 C9  C 0 1 N N N N N N 6.228  38.045 14.467 1.243  1.693  -0.036 C14 YAR 10 
YAR C16 C10 C 0 1 N N N N N N 5.576  38.758 13.513 2.061  2.758  -0.200 C16 YAR 11 
YAR C2  C11 C 0 1 N N N N N N 5.850  32.798 17.415 -4.542 0.176  0.333  C2  YAR 12 
YAR C23 C12 C 0 1 N N N N N N 6.523  34.005 17.147 -3.161 0.000  0.444  C23 YAR 13 
YAR C39 C13 C 0 1 N N N N N N 3.663  33.680 21.650 -0.623 -6.010 -0.985 C39 YAR 14 
YAR C9  C14 C 0 1 N N N N N N 4.192  36.925 12.976 0.214  4.230  -0.366 C9  YAR 15 
YAR N17 N2  N 0 1 N N N N N N 4.574  38.209 12.778 1.554  4.005  -0.359 N17 YAR 16 
YAR O18 O1  O 0 1 N N N N N N 10.976 37.599 14.808 3.858  -1.617 1.515  O18 YAR 17 
YAR O19 O2  O 0 1 N N N N N N 9.647  37.078 16.895 5.733  -0.449 0.294  O19 YAR 18 
YAR O20 O3  O 0 1 N N N N N N 4.433  34.862 14.106 -2.000 3.433  -0.205 O20 YAR 19 
YAR O21 O4  O 0 1 N N N N N N 10.301 39.545 16.317 3.958  -1.902 -0.991 O21 YAR 20 
YAR O22 O5  O 0 1 N N N N N N 8.608  38.291 14.774 3.245  0.381  0.100  O22 YAR 21 
YAR O3  O6  O 0 1 N N N N N N 6.337  31.922 18.112 -5.041 1.360  -0.087 O3  YAR 22 
YAR O8  O7  O 0 1 N N N N N N 4.628  32.594 16.899 -5.297 -0.740 0.614  O8  YAR 23 
YAR P24 P1  P 0 1 N N N N N N 9.900  38.114 15.695 4.191  -0.912 0.257  P24 YAR 24 
YAR S6  S1  S 0 1 N N N N N N 6.306  33.934 20.767 -1.571 -3.767 0.261  S6  YAR 25 
YAR H1  H1  H 0 1 N N N N N N 8.077  33.729 18.599 -3.353 -1.838 1.512  H1  YAR 26 
YAR H2  H2  H 0 1 N N N N N N 8.067  35.340 17.805 -1.713 -1.146 1.513  H2  YAR 27 
YAR H3  H3  H 0 1 N N N N N N 7.168  35.978 19.819 -3.133 -2.353 -0.904 H3  YAR 28 
YAR H4  H4  H 0 1 N N N N N N 5.648  35.457 19.015 -1.493 -1.661 -0.902 H4  YAR 29 
YAR H5  H5  H 0 1 N N N N N N 4.240  33.569 19.563 -0.483 -4.050 -1.868 H5  YAR 30 
YAR H6  H6  H 0 1 N N N N N N 4.704  32.135 20.540 -2.123 -4.743 -1.870 H6  YAR 31 
YAR H7  H7  H 0 1 N N N N N N 2.905  35.298 12.436 -0.409 6.113  0.420  H7  YAR 32 
YAR H8  H8  H 0 1 N N N N N N 2.160  36.926 12.297 0.391  6.200  -1.167 H8  YAR 33 
YAR H9  H9  H 0 1 N N N N N N 3.361  36.381 11.077 -1.278 5.596  -1.045 H9  YAR 34 
YAR H10 H10 H 0 1 N N N N N N 7.517  36.213 16.040 -0.642 -0.199 0.264  H10 YAR 35 
YAR H11 H11 H 0 1 N N N N N N 7.233  39.770 15.229 1.502  -0.094 1.102  H11 YAR 36 
YAR H12 H12 H 0 1 N N N N N N 7.239  38.347 16.325 1.464  -0.336 -0.661 H12 YAR 37 
YAR H13 H13 H 0 1 N N N N N N 5.860  39.785 13.334 3.131  2.613  -0.203 H13 YAR 38 
YAR H15 H15 H 0 1 N N N N N N 2.671  33.238 21.473 -0.403 -6.528 -1.919 H15 YAR 39 
YAR H16 H16 H 0 1 N N N N N N 4.046  33.343 22.625 0.294  -5.897 -0.408 H16 YAR 40 
YAR H17 H17 H 0 1 N N N N N N 3.581  34.777 21.647 -1.345 -6.589 -0.410 H17 YAR 41 
YAR H18 H18 H 0 1 N N N N N N 10.235 36.337 16.804 6.361  -1.178 0.387  H18 YAR 42 
YAR H19 H19 H 0 1 N N N N N N 4.967  34.471 14.788 -2.239 4.362  -0.326 H19 YAR 43 
YAR H20 H20 H 0 1 N N N N N N 11.160 39.799 16.000 4.157  -1.506 -1.850 H20 YAR 44 
YAR H21 H21 H 0 1 N N N N N N 5.730  31.194 18.177 -6.007 1.386  -0.132 H21 YAR 45 
YAR H14 H14 H 0 1 N N N N N N 4.113  38.760 12.082 2.161  4.753  -0.474 H14 YAR 46 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
YAR C10 C9  SING N N 1  
YAR N17 C9  SING N N 2  
YAR N17 C16 SING N N 3  
YAR C9  C11 DOUB N N 4  
YAR C16 C14 DOUB N N 5  
YAR C11 O20 SING N N 6  
YAR C11 C12 SING N N 7  
YAR C14 C12 SING N N 8  
YAR C14 C15 SING N N 9  
YAR C12 C13 DOUB N Z 10 
YAR O22 C15 SING N N 11 
YAR O22 P24 SING N N 12 
YAR O18 P24 DOUB N N 13 
YAR P24 O21 SING N N 14 
YAR P24 O19 SING N N 15 
YAR C13 N1  SING N N 16 
YAR N1  C23 DOUB N N 17 
YAR O8  C2  DOUB N N 18 
YAR C23 C2  SING N N 19 
YAR C23 C4  SING N N 20 
YAR C2  O3  SING N N 21 
YAR C4  C5  SING N N 22 
YAR C5  S6  SING N N 23 
YAR C7  S6  SING N N 24 
YAR C7  C39 SING N N 25 
YAR C4  H1  SING N N 26 
YAR C4  H2  SING N N 27 
YAR C5  H3  SING N N 28 
YAR C5  H4  SING N N 29 
YAR C7  H5  SING N N 30 
YAR C7  H6  SING N N 31 
YAR C10 H7  SING N N 32 
YAR C10 H8  SING N N 33 
YAR C10 H9  SING N N 34 
YAR C13 H10 SING N N 35 
YAR C15 H11 SING N N 36 
YAR C15 H12 SING N N 37 
YAR C16 H13 SING N N 38 
YAR C39 H15 SING N N 39 
YAR C39 H16 SING N N 40 
YAR C39 H17 SING N N 41 
YAR O19 H18 SING N N 42 
YAR O20 H19 SING N N 43 
YAR O21 H20 SING N N 44 
YAR O3  H21 SING N N 45 
YAR N17 H14 SING N N 46 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
YAR SMILES           ACDLabs              12.01 "O=C(O)C(\CCSCC)=N\C=C1/C(O)=C(C)NC=C1COP(=O)(O)O"                                                                                                           
YAR InChI            InChI                1.06  "InChI=1S/C14H21N2O7PS/c1-3-25-5-4-12(14(18)19)16-7-11-10(8-23-24(20,21)22)6-15-9(2)13(11)17/h6-7,15,17H,3-5,8H2,1-2H3,(H,18,19)(H2,20,21,22)/b11-7-,16-12+" 
YAR InChIKey         InChI                1.06  BRPPVXUZMWRMGM-YAHQYOFBSA-N                                                                                                                                  
YAR SMILES_CANONICAL CACTVS               3.385 "CCSCCC(=N\C=C1/C(=C(C)NC=C1CO[P](O)(O)=O)O)C(O)=O"                                                                                                          
YAR SMILES           CACTVS               3.385 "CCSCCC(=NC=C1C(=C(C)NC=C1CO[P](O)(O)=O)O)C(O)=O"                                                                                                            
YAR SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CCSCC/C(=N\C=C/1\C(=CNC(=C1O)C)COP(=O)(O)O)/C(=O)O"                                                                                                         
YAR SMILES           "OpenEye OEToolkits" 2.0.7 "CCSCCC(=NC=C1C(=CNC(=C1O)C)COP(=O)(O)O)C(=O)O"                                                                                                              
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
YAR "SYSTEMATIC NAME" ACDLabs              12.01 "(2E)-4-(ethylsulfanyl)-2-{[(Z)-{3-hydroxy-2-methyl-5-[(phosphonooxy)methyl]pyridin-4(1H)-ylidene}methyl]imino}butanoic acid"      
YAR "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(2~{E})-4-ethylsulfanyl-2-[(~{Z})-[2-methyl-3-oxidanyl-5-(phosphonooxymethyl)-1~{H}-pyridin-4-ylidene]methyl]imino-butanoic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
YAR "Create component"   2023-11-29 RCSB 
YAR "Modify value order" 2023-11-30 RCSB 
YAR "Initial release"    2023-12-13 RCSB 
# 
