data_12S
# 
_chem_comp.id                                    12S 
_chem_comp.name                                  "6,6'-{[5-(3-aminopropyl)benzene-1,3-diyl]diethane-2,1-diyl}bis(4-methylpyridin-2-amine)" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C25 H33 N5" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2013-01-08 
_chem_comp.pdbx_modified_date                    2013-04-19 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        403.563 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     12S 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        4IMS 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
12S N26 N26 N 0 1 N N N 9.106  2.669  33.841 -7.524 -0.644 -0.895 N26 12S 1  
12S C26 C26 C 0 1 Y N N 7.916  2.520  33.198 -6.444 -1.218 -0.234 C26 12S 2  
12S C25 C25 C 0 1 Y N N 6.724  2.649  33.934 -6.596 -2.452 0.391  C25 12S 3  
12S C24 C24 C 0 1 Y N N 5.513  2.492  33.258 -5.513 -3.011 1.045  C24 12S 4  
12S C27 C27 C 0 1 N N N 4.202  2.619  33.966 -5.636 -4.346 1.734  C27 12S 5  
12S C23 C23 C 0 1 Y N N 5.494  2.219  31.885 -4.312 -2.316 1.053  C23 12S 6  
12S N21 N21 N 0 1 Y N N 7.891  2.244  31.852 -5.280 -0.588 -0.209 N21 12S 7  
12S C22 C22 C 0 1 Y N N 6.699  2.088  31.177 -4.232 -1.096 0.413  C22 12S 8  
12S C28 C28 C 0 1 N N N 6.583  1.784  29.682 -2.929 -0.339 0.412  C28 12S 9  
12S C29 C29 C 0 1 N N N 7.924  1.606  28.968 -2.516 -0.035 -1.029 C29 12S 10 
12S C5  C5  C 0 1 Y N N 7.790  1.592  27.457 -1.212 0.721  -1.030 C5  12S 11 
12S C4  C4  C 0 1 Y N N 8.856  1.976  26.642 -0.014 0.033  -1.076 C4  12S 12 
12S C6  C6  C 0 1 Y N N 6.603  1.189  26.848 -1.215 2.103  -0.989 C6  12S 13 
12S C1  C1  C 0 1 Y N N 6.469  1.156  25.452 -0.020 2.797  -0.990 C1  12S 14 
12S C7  C7  C 0 1 N N N 5.155  0.705  24.836 -0.023 4.303  -0.947 C7  12S 15 
12S C8  C8  C 0 1 N N N 4.135  0.186  25.869 0.002  4.771  0.510  C8  12S 16 
12S C9  C9  C 0 1 N N N 4.489  -1.130 26.589 -0.002 6.301  0.554  C9  12S 17 
12S N10 N10 N 0 1 N N N 5.338  -2.042 25.824 0.022  6.750  1.952  N10 12S 18 
12S C2  C2  C 0 1 Y N N 7.548  1.544  24.640 1.179  2.109  -1.031 C2  12S 19 
12S C3  C3  C 0 1 Y N N 8.749  1.959  25.241 1.181  0.727  -1.076 C3  12S 20 
12S C19 C19 C 0 1 N N N 9.950  2.367  24.399 2.488  -0.023 -1.120 C19 12S 21 
12S C18 C18 C 0 1 N N N 11.073 1.357  24.644 2.951  -0.324 0.307  C18 12S 22 
12S C12 C12 C 0 1 Y N N 12.313 1.337  23.739 4.257  -1.074 0.263  C12 12S 23 
12S C13 C13 C 0 1 Y N N 12.533 2.220  22.675 5.347  -0.586 0.957  C13 12S 24 
12S N11 N11 N 0 1 Y N N 13.237 0.371  23.990 4.344  -2.191 -0.434 N11 12S 25 
12S C16 C16 C 0 1 Y N N 14.374 0.265  23.278 5.471  -2.883 -0.500 C16 12S 26 
12S N16 N16 N 0 1 N N N 15.261 -0.716 23.619 5.518  -4.055 -1.246 N16 12S 27 
12S C15 C15 C 0 1 Y N N 14.610 1.137  22.210 6.609  -2.447 0.170  C15 12S 28 
12S C14 C14 C 0 1 Y N N 13.675 2.103  21.897 6.546  -1.285 0.918  C14 12S 29 
12S C17 C17 C 0 1 N N N 13.916 3.057  20.728 7.757  -0.778 1.658  C17 12S 30 
12S H1  H1  H 0 1 N N N 9.855  2.547  33.190 -8.378 -1.103 -0.920 H1  12S 31 
12S H2  H2  H 0 1 N N N 9.157  3.585  34.239 -7.424 0.218  -1.329 H2  12S 32 
12S H3  H3  H 0 1 N N N 6.745  2.863  34.992 -7.545 -2.965 0.365  H3  12S 33 
12S H4  H4  H 0 1 N N N 3.893  1.634  34.345 -5.385 -5.142 1.032  H4  12S 34 
12S H5  H5  H 0 1 N N N 4.306  3.320  34.808 -4.952 -4.381 2.582  H5  12S 35 
12S H6  H6  H 0 1 N N N 3.442  2.997  33.266 -6.658 -4.481 2.086  H6  12S 36 
12S H7  H7  H 0 1 N N N 4.551  2.109  31.370 -3.448 -2.725 1.556  H7  12S 37 
12S H8  H8  H 0 1 N N N 6.045  2.615  29.202 -3.051 0.595  0.960  H8  12S 38 
12S H9  H9  H 0 1 N N N 6.004  0.856  29.563 -2.158 -0.943 0.891  H9  12S 39 
12S H10 H10 H 0 1 N N N 8.369  0.653  29.290 -2.394 -0.970 -1.577 H10 12S 40 
12S H11 H11 H 0 1 N N N 8.587  2.436  29.254 -3.287 0.568  -1.508 H11 12S 41 
12S H12 H12 H 0 1 N N N 9.782  2.293  27.098 -0.012 -1.046 -1.112 H12 12S 42 
12S H13 H13 H 0 1 N N N 5.767  0.895  27.465 -2.151 2.640  -0.958 H13 12S 43 
12S H14 H14 H 0 1 N N N 4.709  1.559  24.305 0.858  4.683  -1.465 H14 12S 44 
12S H15 H15 H 0 1 N N N 5.366  -0.103 24.120 -0.922 4.679  -1.434 H15 12S 45 
12S H16 H16 H 0 1 N N N 4.013  0.964  26.637 -0.879 4.391  1.028  H16 12S 46 
12S H17 H17 H 0 1 N N N 3.179  0.034  25.346 0.901  4.396  0.997  H17 12S 47 
12S H18 H18 H 0 1 N N N 3.551  -1.654 26.825 0.879  6.681  0.035  H18 12S 48 
12S H19 H19 H 0 1 N N N 5.013  -0.878 27.523 -0.901 6.676  0.066  H19 12S 49 
12S H20 H20 H 0 1 N N N 5.516  -2.864 26.364 0.020  7.758  2.008  H20 12S 50 
12S H21 H21 H 0 1 N N N 4.875  -2.295 24.975 -0.750 6.358  2.471  H21 12S 51 
12S H23 H23 H 0 1 N N N 7.455  1.524  23.564 2.113  2.651  -1.030 H23 12S 52 
12S H24 H24 H 0 1 N N N 10.284 3.373  24.691 2.352  -0.958 -1.663 H24 12S 53 
12S H25 H25 H 0 1 N N N 9.675  2.367  23.334 3.239  0.585  -1.625 H25 12S 54 
12S H26 H26 H 0 1 N N N 10.618 0.358  24.578 3.087  0.611  0.850  H26 12S 55 
12S H27 H27 H 0 1 N N N 11.433 1.529  25.669 2.200  -0.932 0.812  H27 12S 56 
12S H28 H28 H 0 1 N N N 11.811 2.994  22.460 5.267  0.329  1.524  H28 12S 57 
12S H29 H29 H 0 1 N N N 14.903 -1.235 24.395 4.726  -4.362 -1.716 H29 12S 58 
12S H30 H30 H 0 1 N N N 15.395 -1.330 22.841 6.341  -4.565 -1.298 H30 12S 59 
12S H31 H31 H 0 1 N N N 15.519 1.055  21.633 7.528  -3.013 0.115  H31 12S 60 
12S H32 H32 H 0 1 N N N 13.488 2.628  19.810 8.326  -0.110 1.011  H32 12S 61 
12S H33 H33 H 0 1 N N N 13.436 4.024  20.939 7.438  -0.236 2.549  H33 12S 62 
12S H34 H34 H 0 1 N N N 14.998 3.206  20.594 8.383  -1.621 1.950  H34 12S 63 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
12S C17 C14 SING N N 1  
12S C14 C15 DOUB Y N 2  
12S C14 C13 SING Y N 3  
12S C15 C16 SING Y N 4  
12S C13 C12 DOUB Y N 5  
12S C16 N16 SING N N 6  
12S C16 N11 DOUB Y N 7  
12S C12 N11 SING Y N 8  
12S C12 C18 SING N N 9  
12S C19 C18 SING N N 10 
12S C19 C3  SING N N 11 
12S C2  C3  DOUB Y N 12 
12S C2  C1  SING Y N 13 
12S C7  C1  SING N N 14 
12S C7  C8  SING N N 15 
12S C3  C4  SING Y N 16 
12S C1  C6  DOUB Y N 17 
12S N10 C9  SING N N 18 
12S C8  C9  SING N N 19 
12S C4  C5  DOUB Y N 20 
12S C6  C5  SING Y N 21 
12S C5  C29 SING N N 22 
12S C29 C28 SING N N 23 
12S C28 C22 SING N N 24 
12S C22 N21 DOUB Y N 25 
12S C22 C23 SING Y N 26 
12S N21 C26 SING Y N 27 
12S C23 C24 DOUB Y N 28 
12S C26 N26 SING N N 29 
12S C26 C25 DOUB Y N 30 
12S C24 C25 SING Y N 31 
12S C24 C27 SING N N 32 
12S N26 H1  SING N N 33 
12S N26 H2  SING N N 34 
12S C25 H3  SING N N 35 
12S C27 H4  SING N N 36 
12S C27 H5  SING N N 37 
12S C27 H6  SING N N 38 
12S C23 H7  SING N N 39 
12S C28 H8  SING N N 40 
12S C28 H9  SING N N 41 
12S C29 H10 SING N N 42 
12S C29 H11 SING N N 43 
12S C4  H12 SING N N 44 
12S C6  H13 SING N N 45 
12S C7  H14 SING N N 46 
12S C7  H15 SING N N 47 
12S C8  H16 SING N N 48 
12S C8  H17 SING N N 49 
12S C9  H18 SING N N 50 
12S C9  H19 SING N N 51 
12S N10 H20 SING N N 52 
12S N10 H21 SING N N 53 
12S C2  H23 SING N N 54 
12S C19 H24 SING N N 55 
12S C19 H25 SING N N 56 
12S C18 H26 SING N N 57 
12S C18 H27 SING N N 58 
12S C13 H28 SING N N 59 
12S N16 H29 SING N N 60 
12S N16 H30 SING N N 61 
12S C15 H31 SING N N 62 
12S C17 H32 SING N N 63 
12S C17 H33 SING N N 64 
12S C17 H34 SING N N 65 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
12S SMILES           ACDLabs              12.01 "n1c(N)cc(cc1CCc2cc(cc(c2)CCCN)CCc3nc(N)cc(c3)C)C"                                                                                                         
12S InChI            InChI                1.03  "InChI=1S/C25H33N5/c1-17-10-22(29-24(27)12-17)7-5-20-14-19(4-3-9-26)15-21(16-20)6-8-23-11-18(2)13-25(28)30-23/h10-16H,3-9,26H2,1-2H3,(H2,27,29)(H2,28,30)" 
12S InChIKey         InChI                1.03  TUMIYXWSFLIVFR-UHFFFAOYSA-N                                                                                                                                
12S SMILES_CANONICAL CACTVS               3.370 "Cc1cc(N)nc(CCc2cc(CCCN)cc(CCc3cc(C)cc(N)n3)c2)c1"                                                                                                         
12S SMILES           CACTVS               3.370 "Cc1cc(N)nc(CCc2cc(CCCN)cc(CCc3cc(C)cc(N)n3)c2)c1"                                                                                                         
12S SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "Cc1cc(nc(c1)N)CCc2cc(cc(c2)CCc3cc(cc(n3)N)C)CCCN"                                                                                                         
12S SMILES           "OpenEye OEToolkits" 1.7.6 "Cc1cc(nc(c1)N)CCc2cc(cc(c2)CCc3cc(cc(n3)N)C)CCCN"                                                                                                         
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
12S "SYSTEMATIC NAME" ACDLabs              12.01 "6,6'-{[5-(3-aminopropyl)benzene-1,3-diyl]diethane-2,1-diyl}bis(4-methylpyridin-2-amine)"                    
12S "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "6-[2-[3-[2-(6-azanyl-4-methyl-pyridin-2-yl)ethyl]-5-(3-azanylpropyl)phenyl]ethyl]-4-methyl-pyridin-2-amine" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
12S "Create component" 2013-01-08 RCSB 
12S "Initial release"  2013-04-24 RCSB 
# 
