data_57S
#

_chem_comp.id                                   57S
_chem_comp.name                                 4-O-[2-acetamido-2-deoxy-beta-D-glucopyranosyl]-5-O-phosphono-D-ribitol
_chem_comp.type                                 D-saccharide
_chem_comp.pdbx_type                            ATOMS
_chem_comp.formula                              "C13 H26 N O13 P"
_chem_comp.mon_nstd_parent_comp_id              NAG
_chem_comp.pdbx_synonyms                        
;4-O-[2-(acetylamino)-2-deoxy-beta-D-glucopyranosyl]-5-O-phosphono-D-ribitol;
4-O-[2-acetamido-2-deoxy-beta-D-glucosyl]-5-O-phosphono-D-ribitol;
4-O-[2-acetamido-2-deoxy-D-glucosyl]-5-O-phosphono-D-ribitol; 4-O-[2-acetamido-2-deoxy-glucosyl]-5-O-phosphono-D-ribitol
;

_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2015-08-12
_chem_comp.pdbx_modified_date                   2020-07-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       435.318
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    57S
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       5D6C
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_pdbx_chem_comp_synonyms.ordinal
_pdbx_chem_comp_synonyms.comp_id
_pdbx_chem_comp_synonyms.name
_pdbx_chem_comp_synonyms.provenance
_pdbx_chem_comp_synonyms.type
1  57S  "4-O-[2-(acetylamino)-2-deoxy-beta-D-glucopyranosyl]-5-O-phosphono-D-ribitol"  PDB  ?  
2  57S  4-O-[2-acetamido-2-deoxy-beta-D-glucosyl]-5-O-phosphono-D-ribitol              PDB  ?  
3  57S  4-O-[2-acetamido-2-deoxy-D-glucosyl]-5-O-phosphono-D-ribitol                   PDB  ?  
4  57S  4-O-[2-acetamido-2-deoxy-glucosyl]-5-O-phosphono-D-ribitol                     PDB  ?  
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
57S  C1   C14  C  0  1  N  N  S  -3.733  19.682  -19.336  -1.207   0.436   0.326  C1   57S   1  
57S  C2   C5   C  0  1  N  N  R  -3.776  18.146  -19.264  -1.812   1.407  -0.691  C2   57S   2  
57S  C5   C11  C  0  1  N  N  R  -1.504  19.823  -18.317  -3.362  -0.038   1.267  C5   57S   3  
57S  C3   C7   C  0  1  N  N  R  -2.789  17.630  -18.191  -3.079   2.031  -0.099  C3   57S   4  
57S  C4   C9   C  0  1  N  N  S  -1.392  18.285  -18.312  -4.053   0.914   0.288  C4   57S   5  
57S  C8   C1   C  0  1  N  N  N  -7.502  17.111  -19.506   1.095   3.347  -2.254  C8   57S   6  
57S  C7   C2   C  0  1  N  N  N  -6.083  17.380  -19.924   0.098   2.262  -1.941  C7   57S   7  
57S  O7   O3   O  0  1  N  N  N  -5.786  17.194  -21.087   0.141   1.207  -2.538  O7   57S   8  
57S  N2   N4   N  0  1  N  N  N  -5.182  17.786  -18.984  -0.842   2.462  -0.996  N2   57S   9  
57S  O5   O13  O  0  1  N  N  N  -2.401  20.207  -19.372  -2.175  -0.560   0.666  O5   57S  10  
57S  O1   O16  O  0  1  N  N  N  -4.459  20.113  -20.493  -0.056  -0.193  -0.240  O1   57S  11  
57S  C17  C17  C  0  1  N  N  R  -5.068  21.395  -20.319   0.652  -1.038   0.669  C17  57S  12  
57S  C19  C19  C  0  1  N  N  N  -6.357  21.234  -19.499   1.717  -0.219   1.402  C19  57S  13  
57S  O20  O20  O  0  1  N  N  N  -7.358  20.478  -20.170   2.697   0.234   0.466  O20  57S  14  
57S  P21  P21  P  0  1  N  N  N  -8.910  20.780  -19.884   3.968   1.127   0.891  P21  57S  15  
57S  O22  O22  O  0  1  N  N  N  -9.237  20.434  -18.482   4.928   0.268   1.857  O22  57S  16  
57S  O23  O23  O  0  1  N  N  N  -9.188  22.352  -20.122   4.783   1.562  -0.428  O23  57S  17  
57S  O24  O24  O  0  1  N  N  N  -9.806  19.909  -20.895   3.504   2.337   1.606  O24  57S  18  
57S  C25  C25  C  0  1  N  N  S  -5.270  22.182  -21.634   1.325  -2.172  -0.107  C25  57S  19  
57S  C27  C27  C  0  1  N  N  S  -4.088  22.274  -22.641   0.260  -2.990  -0.840  C27  57S  20  
57S  C29  C29  C  0  1  N  N  N  -2.663  22.228  -22.067   0.933  -4.124  -1.616  C29  57S  21  
57S  O30  O30  O  0  1  N  N  N  -1.711  22.531  -23.093  -0.067  -4.957  -2.206  O30  57S  22  
57S  O31  O31  O  0  1  N  N  N  -4.211  23.479  -23.412  -0.448  -2.145  -1.750  O31  57S  23  
57S  O32  O32  O  0  1  N  N  N  -5.711  23.499  -21.275   2.033  -3.017   0.802  O32  57S  24  
57S  C6   C33  C  0  1  N  N  N  -0.140  20.465  -18.607  -4.308  -1.190   1.612  C6   57S  25  
57S  O6   O34  O  0  1  N  N  N  -0.323  21.850  -18.934  -3.709  -2.015   2.613  O6   57S  26  
57S  O4   O35  O  0  1  N  N  N  -0.516  17.860  -17.262  -5.208   1.481   0.908  O4   57S  27  
57S  O3   O36  O  0  1  N  N  N  -2.644  16.231  -18.425  -3.689   2.886  -1.068  O3   57S  28  
57S  H1   H1   H  0  1  N  N  N  -4.239  20.067  -18.439  -0.918   0.983   1.224  H1   57S  29  
57S  H2   H2   H  0  1  N  N  N  -3.479  17.737  -20.241  -2.063   0.868  -1.605  H2   57S  30  
57S  H5   H3   H  0  1  N  N  N  -1.874  20.168  -17.340  -3.101   0.502   2.177  H5   57S  31  
57S  H3   H4   H  0  1  N  N  N  -3.200  17.826  -17.190  -2.820   2.612   0.787  H3   57S  32  
57S  H4   H5   H  0  1  N  N  N  -0.966  17.980  -19.279  -4.350   0.365  -0.606  H4   57S  33  
57S  H81  H6   H  0  1  N  N  N  -8.082  16.767  -20.375   0.900   4.213  -1.621  H81  57S  34  
57S  H82  H7   H  0  1  N  N  N  -7.514  16.335  -18.727   2.103   2.979  -2.066  H82  57S  35  
57S  H83  H8   H  0  1  N  N  N  -7.949  18.035  -19.110   1.002   3.634  -3.301  H83  57S  36  
57S  HN2  H9   H  0  1  N  N  N  -5.495  17.844  -18.036  -0.877   3.306  -0.518  HN2  57S  37  
57S  H10  H10  H  0  1  N  N  N  -4.387  22.001  -19.703  -0.046  -1.457   1.393  H10  57S  38  
57S  H11  H11  H  0  1  N  N  N  -6.110  20.726  -18.555   1.248   0.640   1.882  H11  57S  39  
57S  H12  H12  H  0  1  N  N  N  -6.761  22.234  -19.283   2.196  -0.841   2.158  H12  57S  40  
57S  H13  H13  H  0  1  N  N  N  -9.912  19.766  -18.469   5.270  -0.541   1.452  H13  57S  41  
57S  H14  H14  H  0  1  N  N  N  -9.829  22.459  -20.815   5.563   2.103  -0.247  H14  57S  42  
57S  H15  H15  H  0  1  N  N  N  -6.094  21.687  -22.169   2.023  -1.752  -0.831  H15  57S  43  
57S  H16  H16  H  0  1  N  N  N  -4.186  21.418  -23.324  -0.438  -3.410  -0.116  H16  57S  44  
57S  H17  H17  H  0  1  N  N  N  -2.463  21.222  -21.670   1.564  -3.704  -2.400  H17  57S  45  
57S  H18  H18  H  0  1  N  N  N  -2.573  22.967  -21.257   1.545  -4.716  -0.936  H18  57S  46  
57S  H19  H19  H  0  1  N  N  N  -0.833  22.501  -22.730   0.288  -5.698  -2.714  H19  57S  47  
57S  H20  H20  H  0  1  N  N  N  -5.085  23.533  -23.779   0.112  -1.736  -2.424  H20  57S  48  
57S  H21  H21  H  0  1  N  N  N  -6.432  23.435  -20.660   1.473  -3.425   1.476  H21  57S  49  
57S  H61  H22  H  0  1  N  N  N   0.336  19.948  -19.453  -5.249  -0.788   1.987  H61  57S  50  
57S  H62  H23  H  0  1  N  N  N   0.502  20.380  -17.718  -4.498  -1.784   0.718  H62  57S  51  
57S  HO6  H24  H  0  1  N  Y  N   0.521  22.248  -19.114  -4.254  -2.767   2.881  HO6  57S  52  
57S  HO4  H25  H  0  1  N  Y  N  -0.453  16.912  -17.266  -5.867   0.829   1.183  HO4  57S  53  
57S  HO3  H26  H  0  1  N  Y  N  -2.043  15.863  -17.788  -4.498   3.315  -0.760  HO3  57S  54  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
57S  O31  C27  SING  N  N   1  
57S  O30  C29  SING  N  N   2  
57S  C27  C29  SING  N  N   3  
57S  C27  C25  SING  N  N   4  
57S  C25  O32  SING  N  N   5  
57S  C25  C17  SING  N  N   6  
57S  O7   C7   DOUB  N  N   7  
57S  O24  P21  DOUB  N  N   8  
57S  O1   C17  SING  N  N   9  
57S  O1   C1   SING  N  N  10  
57S  C17  C19  SING  N  N  11  
57S  O20  P21  SING  N  N  12  
57S  O20  C19  SING  N  N  13  
57S  O23  P21  SING  N  N  14  
57S  C7   C8   SING  N  N  15  
57S  C7   N2   SING  N  N  16  
57S  P21  O22  SING  N  N  17  
57S  O5   C1   SING  N  N  18  
57S  O5   C5   SING  N  N  19  
57S  C1   C2   SING  N  N  20  
57S  C2   N2   SING  N  N  21  
57S  C2   C3   SING  N  N  22  
57S  O6   C6   SING  N  N  23  
57S  C6   C5   SING  N  N  24  
57S  O3   C3   SING  N  N  25  
57S  C5   C4   SING  N  N  26  
57S  C4   C3   SING  N  N  27  
57S  C4   O4   SING  N  N  28  
57S  C1   H1   SING  N  N  29  
57S  C2   H2   SING  N  N  30  
57S  C5   H5   SING  N  N  31  
57S  C3   H3   SING  N  N  32  
57S  C4   H4   SING  N  N  33  
57S  C8   H81  SING  N  N  34  
57S  C8   H82  SING  N  N  35  
57S  C8   H83  SING  N  N  36  
57S  N2   HN2  SING  N  N  37  
57S  C17  H10  SING  N  N  38  
57S  C19  H11  SING  N  N  39  
57S  C19  H12  SING  N  N  40  
57S  O22  H13  SING  N  N  41  
57S  O23  H14  SING  N  N  42  
57S  C25  H15  SING  N  N  43  
57S  C27  H16  SING  N  N  44  
57S  C29  H17  SING  N  N  45  
57S  C29  H18  SING  N  N  46  
57S  O30  H19  SING  N  N  47  
57S  O31  H20  SING  N  N  48  
57S  O32  H21  SING  N  N  49  
57S  C6   H61  SING  N  N  50  
57S  C6   H62  SING  N  N  51  
57S  O6   HO6  SING  N  N  52  
57S  O4   HO4  SING  N  N  53  
57S  O3   HO3  SING  N  N  54  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
57S  SMILES            ACDLabs               12.01  "C1(C(NC(C)=O)C(C(C(O1)CO)O)O)OC(COP(O)(O)=O)C(O)C(CO)O"  
57S  InChI             InChI                 1.03   "InChI=1S/C13H26NO13P/c1-5(17)14-9-12(21)11(20)7(3-16)26-13(9)27-8(4-25-28(22,23)24)10(19)6(18)2-15/h6-13,15-16,18-21H,2-4H2,1H3,(H,14,17)(H2,22,23,24)/t6-,7+,8+,9+,10-,11+,12+,13-/m0/s1"  
57S  InChIKey          InChI                 1.03   VRKCYAMLHZHZPR-BXGOZMQFSA-N  
57S  SMILES_CANONICAL  CACTVS                3.385  "CC(=O)N[C@@H]1[C@@H](O)[C@H](O)[C@@H](CO)O[C@H]1O[C@H](CO[P](O)(O)=O)[C@@H](O)[C@@H](O)CO"  
57S  SMILES            CACTVS                3.385  "CC(=O)N[CH]1[CH](O)[CH](O)[CH](CO)O[CH]1O[CH](CO[P](O)(O)=O)[CH](O)[CH](O)CO"  
57S  SMILES_CANONICAL  "OpenEye OEToolkits"  1.9.2  "CC(=O)N[C@@H]1[C@H]([C@@H]([C@H](O[C@H]1O[C@H](COP(=O)(O)O)[C@H]([C@H](CO)O)O)CO)O)O"  
57S  SMILES            "OpenEye OEToolkits"  1.9.2  "CC(=O)NC1C(C(C(OC1OC(COP(=O)(O)O)C(C(CO)O)O)CO)O)O"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
57S  "SYSTEMATIC NAME"  ACDLabs               12.01  "4-O-[2-(acetylamino)-2-deoxy-beta-D-glucopyranosyl]-5-O-phosphono-D-ribitol"  
57S  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.9.2  
;[(2R,3S,4S)-2-[(2S,3R,4R,5S,6R)-3-acetamido-6-(hydroxymethyl)-4,5-bis(oxidanyl)oxan-2-yl]oxy-3,4,5-tris(oxidanyl)pentyl
] dihydrogen phosphate
;
  
#
_pdbx_chem_comp_related.comp_id            57S
_pdbx_chem_comp_related.related_comp_id    NAG
_pdbx_chem_comp_related.relationship_type  "Carbohydrate core"
_pdbx_chem_comp_related.details            ?
#   #
loop_
_pdbx_chem_comp_atom_related.ordinal
_pdbx_chem_comp_atom_related.comp_id
_pdbx_chem_comp_atom_related.atom_id
_pdbx_chem_comp_atom_related.related_comp_id
_pdbx_chem_comp_atom_related.related_atom_id
_pdbx_chem_comp_atom_related.related_type
 1  57S  C8   NAG  C8   "Carbohydrate core"  
 2  57S  C5   NAG  C5   "Carbohydrate core"  
 3  57S  C1   NAG  C1   "Carbohydrate core"  
 4  57S  C7   NAG  C7   "Carbohydrate core"  
 5  57S  C6   NAG  C6   "Carbohydrate core"  
 6  57S  C2   NAG  C2   "Carbohydrate core"  
 7  57S  C3   NAG  C3   "Carbohydrate core"  
 8  57S  C4   NAG  C4   "Carbohydrate core"  
 9  57S  N2   NAG  N2   "Carbohydrate core"  
10  57S  O5   NAG  O5   "Carbohydrate core"  
11  57S  O1   NAG  O1   "Carbohydrate core"  
12  57S  O7   NAG  O7   "Carbohydrate core"  
13  57S  O6   NAG  O6   "Carbohydrate core"  
14  57S  O4   NAG  O4   "Carbohydrate core"  
15  57S  O3   NAG  O3   "Carbohydrate core"  
16  57S  H1   NAG  H1   "Carbohydrate core"  
17  57S  H2   NAG  H2   "Carbohydrate core"  
18  57S  H61  NAG  H61  "Carbohydrate core"  
19  57S  H62  NAG  H62  "Carbohydrate core"  
20  57S  HO6  NAG  HO6  "Carbohydrate core"  
21  57S  HO4  NAG  HO4  "Carbohydrate core"  
22  57S  HO3  NAG  HO3  "Carbohydrate core"  
23  57S  H5   NAG  H5   "Carbohydrate core"  
24  57S  H3   NAG  H3   "Carbohydrate core"  
25  57S  H4   NAG  H4   "Carbohydrate core"  
26  57S  H81  NAG  H81  "Carbohydrate core"  
27  57S  H82  NAG  H82  "Carbohydrate core"  
28  57S  H83  NAG  H83  "Carbohydrate core"  
29  57S  HN2  NAG  HN2  "Carbohydrate core"  
#   #
loop_
_pdbx_chem_comp_feature.comp_id
_pdbx_chem_comp_feature.type
_pdbx_chem_comp_feature.value
_pdbx_chem_comp_feature.source
_pdbx_chem_comp_feature.support
57S  "CARBOHYDRATE ISOMER"                  D         PDB  ?  
57S  "CARBOHYDRATE RING"                    pyranose  PDB  ?  
57S  "CARBOHYDRATE ANOMER"                  beta      PDB  ?  
57S  "CARBOHYDRATE PRIMARY CARBONYL GROUP"  aldose    PDB  ?  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
57S  "Create component"          2015-08-12  RCSB  
57S  "Initial release"           2015-11-11  RCSB  
57S  "Other modification"        2020-07-03  RCSB  
57S  "Modify parent residue"     2020-07-17  RCSB  
57S  "Modify name"               2020-07-17  RCSB  
57S  "Modify synonyms"           2020-07-17  RCSB  
57S  "Modify internal type"      2020-07-17  RCSB  
57S  "Modify linking type"       2020-07-17  RCSB  
57S  "Modify atom id"            2020-07-17  RCSB  
57S  "Modify component atom id"  2020-07-17  RCSB  
57S  "Modify leaving atom flag"  2020-07-17  RCSB  
##
