data_B8S
# 
_chem_comp.id                                    B8S 
_chem_comp.name                                  "N-{[2-chloro-5-(2-{3-[4-(6-chloro-3-methyl-2-oxo-2,3-dihydro-1H-benzimidazol-1-yl)piperidin-1-yl]propyl}-3-oxo-2,3-dihydropyridazin-4-yl)phenyl]methyl}-4-fluorobenzamide" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C34 H33 Cl2 F N6 O3" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2017-08-07 
_chem_comp.pdbx_modified_date                    2017-12-15 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        663.569 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     B8S 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        5QBW 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
B8S C94  C1  C  0 1 N N N -28.569 -3.285 -11.991 -8.595  3.663  -0.605 C94  B8S 1  
B8S N13  N1  N  0 1 N N N -27.224 -3.540 -11.538 -8.436  2.316  -0.051 N13  B8S 2  
B8S C14  C2  C  0 1 N N N -26.872 -3.714 -10.210 -7.478  1.928  0.812  C14  B8S 3  
B8S O90  O1  O  0 1 N N N -27.611 -3.678 -9.247  -6.601  2.645  1.255  O90  B8S 4  
B8S N15  N2  N  0 1 N N N -25.502 -3.942 -10.225 -7.637  0.624  1.108  N15  B8S 5  
B8S C3   C3  C  0 1 Y N N -25.022 -3.899 -11.522 -8.744  0.147  0.410  C3   B8S 6  
B8S C2   C4  C  0 1 Y N N -23.738 -4.065 -11.992 -9.359  -1.094 0.336  C2   B8S 7  
B8S C1   C5  C  0 1 Y N N -23.543 -3.980 -13.346 -10.472 -1.262 -0.467 C1   B8S 8  
B8S CL12 CL1 CL 0 0 N N N -21.923 -4.193 -13.946 -11.243 -2.815 -0.561 CL12 B8S 9  
B8S C6   C6  C  0 1 Y N N -24.593 -3.735 -14.229 -10.975 -0.197 -1.196 C6   B8S 10 
B8S C5   C7  C  0 1 Y N N -25.894 -3.567 -13.733 -10.368 1.042  -1.127 C5   B8S 11 
B8S C4   C8  C  0 1 Y N N -26.089 -3.654 -12.358 -9.254  1.221  -0.321 C4   B8S 12 
B8S C20  C9  C  0 1 N N N -24.692 -4.162 -9.026  -6.790  -0.159 2.011  C20  B8S 13 
B8S C22  C10 C  0 1 N N N -24.596 -2.917 -8.182  -6.431  -1.492 1.349  C22  B8S 14 
B8S C23  C11 C  0 1 N N N -23.610 -3.120 -7.037  -5.628  -1.223 0.074  C23  B8S 15 
B8S N24  N3  N  0 1 N N N -22.980 -4.447 -7.116  -4.408  -0.479 0.411  N24  B8S 16 
B8S C33  C12 C  0 1 N N N -21.836 -4.572 -6.170  -3.544  -0.324 -0.767 C33  B8S 17 
B8S C35  C13 C  0 1 N N N -22.012 -5.549 -5.027  -2.184  0.228  -0.333 C35  B8S 18 
B8S C37  C14 C  0 1 N N N -21.272 -5.114 -3.793  -1.285  0.391  -1.560 C37  B8S 19 
B8S N39  N4  N  0 1 N N N -22.199 -4.857 -2.702  0.017   0.919  -1.145 N39  B8S 20 
B8S N45  N5  N  0 1 N N N -22.792 -5.981 -2.213  0.189   2.190  -1.103 N45  B8S 21 
B8S C44  C15 C  0 1 N N N -23.634 -5.799 -1.237  1.316   2.741  -0.745 C44  B8S 22 
B8S C43  C16 C  0 1 N N N -23.973 -4.575 -0.668  2.413   1.949  -0.381 C43  B8S 23 
B8S C42  C17 C  0 1 N N N -23.383 -3.435 -1.163  2.263   0.569  -0.414 C42  B8S 24 
B8S C41  C18 C  0 1 N N N -22.424 -3.543 -2.254  0.997   0.057  -0.813 C41  B8S 25 
B8S O88  O2  O  0 1 N N N -21.839 -2.606 -2.770  0.803   -1.146 -0.857 O88  B8S 26 
B8S C52  C19 C  0 1 Y N N -23.714 -2.114 -0.590  3.376   -0.335 -0.044 C52  B8S 27 
B8S C54  C20 C  0 1 Y N N -22.728 -1.160 -0.341  3.269   -1.154 1.079  C54  B8S 28 
B8S C55  C21 C  0 1 Y N N -23.066 0.062  0.208   4.309   -1.995 1.418  C55  B8S 29 
B8S C56  C22 C  0 1 Y N N -24.389 0.333  0.512   5.457   -2.026 0.646  C56  B8S 30 
B8S CL16 CL2 CL 0 0 N N N -24.750 1.867  1.196   6.762   -3.086 1.079  CL16 B8S 31 
B8S C57  C23 C  0 1 Y N N -25.408 -0.592 0.281   5.569   -1.214 -0.470 C57  B8S 32 
B8S C58  C24 C  0 1 Y N N -25.040 -1.814 -0.274  4.534   -0.374 -0.822 C58  B8S 33 
B8S C65  C25 C  0 1 N N N -26.857 -0.307 0.608   6.823   -1.253 -1.306 C65  B8S 34 
B8S N67  N6  N  0 1 N N N -27.687 -0.216 -0.585  7.900   -0.550 -0.604 N67  B8S 35 
B8S C69  C26 C  0 1 N N N -28.985 -0.565 -0.607  9.121   -0.457 -1.166 C69  B8S 36 
B8S O86  O3  O  0 1 N N N -29.581 -0.976 0.385   9.330   -0.956 -2.254 O86  B8S 37 
B8S C71  C27 C  0 1 Y N N -29.707 -0.408 -1.904  10.207  0.253  -0.459 C71  B8S 38 
B8S C77  C28 C  0 1 Y N N -29.050 -0.398 -3.134  9.972   0.823  0.794  C77  B8S 39 
B8S C76  C29 C  0 1 Y N N -29.749 -0.238 -4.313  10.990  1.479  1.452  C76  B8S 40 
B8S C75  C30 C  0 1 Y N N -31.102 -0.088 -4.249  12.246  1.574  0.872  C75  B8S 41 
B8S F84  F1  F  0 1 N N N -31.792 0.073  -5.408  13.240  2.218  1.521  F84  B8S 42 
B8S C74  C31 C  0 1 Y N N -31.794 -0.093 -3.066  12.485  1.010  -0.371 C74  B8S 43 
B8S C73  C32 C  0 1 Y N N -31.089 -0.255 -1.885  11.474  0.351  -1.038 C73  B8S 44 
B8S C25  C33 C  0 1 N N N -24.036 -5.514 -7.034  -4.727  0.825  1.005  C25  B8S 45 
B8S C26  C34 C  0 1 N N N -25.037 -5.384 -8.189  -5.504  0.617  2.308  C26  B8S 46 
B8S H1   H1  H  0 1 N N N -29.247 -3.248 -11.126 -7.813  4.313  -0.212 H1   B8S 47 
B8S H2   H2  H  0 1 N N N -28.601 -2.322 -12.522 -8.519  3.620  -1.692 H2   B8S 48 
B8S H3   H3  H  0 1 N N N -28.885 -4.090 -12.671 -9.571  4.058  -0.325 H3   B8S 49 
B8S H4   H4  H  0 1 N N N -22.915 -4.255 -11.319 -8.969  -1.926 0.903  H4   B8S 50 
B8S H5   H5  H  0 1 N N N -24.406 -3.675 -15.291 -11.842 -0.337 -1.824 H5   B8S 51 
B8S H6   H6  H  0 1 N N N -26.722 -3.375 -14.400 -10.762 1.870  -1.697 H6   B8S 52 
B8S H7   H7  H  0 1 N N N -23.669 -4.344 -9.388  -7.325  -0.346 2.942  H7   B8S 53 
B8S H8   H8  H  0 1 N N N -24.254 -2.080 -8.809  -5.833  -2.091 2.036  H8   B8S 54 
B8S H9   H9  H  0 1 N N N -25.588 -2.684 -7.768  -7.345  -2.031 1.097  H9   B8S 55 
B8S H10  H10 H  0 1 N N N -22.829 -2.347 -7.092  -5.359  -2.171 -0.392 H10  B8S 56 
B8S H11  H11 H  0 1 N N N -24.146 -3.032 -6.080  -6.232  -0.636 -0.618 H11  B8S 57 
B8S H13  H13 H  0 1 N N N -20.956 -4.889 -6.749  -3.407  -1.292 -1.247 H13  B8S 58 
B8S H14  H14 H  0 1 N N N -21.651 -3.579 -5.736  -4.009  0.368  -1.469 H14  B8S 59 
B8S H15  H15 H  0 1 N N N -23.083 -5.628 -4.789  -2.322  1.197  0.147  H15  B8S 60 
B8S H16  H16 H  0 1 N N N -21.633 -6.533 -5.340  -1.719  -0.463 0.370  H16  B8S 61 
B8S H17  H17 H  0 1 N N N -20.572 -5.908 -3.493  -1.148  -0.578 -2.041 H17  B8S 62 
B8S H18  H18 H  0 1 N N N -20.710 -4.194 -4.014  -1.750  1.082  -2.263 H18  B8S 63 
B8S H19  H19 H  0 1 N N N -24.113 -6.678 -0.832  1.403   3.817  -0.728 H19  B8S 64 
B8S H20  H20 H  0 1 N N N -24.683 -4.521 0.144   3.349   2.399  -0.083 H20  B8S 65 
B8S H21  H21 H  0 1 N N N -21.697 -1.377 -0.578  2.373   -1.131 1.682  H21  B8S 66 
B8S H22  H22 H  0 1 N N N -22.302 0.802  0.399   4.227   -2.630 2.288  H22  B8S 67 
B8S H23  H23 H  0 1 N N N -25.804 -2.553 -0.466  4.620   0.256  -1.695 H23  B8S 68 
B8S H24  H24 H  0 1 N N N -26.915 0.647  1.153   7.115   -2.290 -1.474 H24  B8S 69 
B8S H25  H25 H  0 1 N N N -27.241 -1.117 1.245   6.636   -0.769 -2.264 H25  B8S 70 
B8S H26  H26 H  0 1 N N N -27.271 0.123  -1.429  7.733   -0.151 0.264  H26  B8S 71 
B8S H27  H27 H  0 1 N N N -27.977 -0.517 -3.164  8.994   0.750  1.247  H27  B8S 72 
B8S H28  H28 H  0 1 N N N -29.236 -0.232 -5.263  10.809  1.920  2.421  H28  B8S 73 
B8S H29  H29 H  0 1 N N N -32.867 0.027  -3.055  13.465  1.086  -0.819 H29  B8S 74 
B8S H30  H30 H  0 1 N N N -31.616 -0.263 -0.943  11.662  -0.092 -2.005 H30  B8S 75 
B8S H31  H31 H  0 1 N N N -24.573 -5.416 -6.079  -3.804  1.365  1.215  H31  B8S 76 
B8S H32  H32 H  0 1 N N N -23.554 -6.502 -7.084  -5.335  1.402  0.309  H32  B8S 77 
B8S H33  H33 H  0 1 N N N -26.053 -5.275 -7.782  -5.754  1.585  2.741  H33  B8S 78 
B8S H34  H34 H  0 1 N N N -24.989 -6.285 -8.819  -4.891  0.051  3.010  H34  B8S 79 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
B8S C6   C5   DOUB Y N 1  
B8S C6   C1   SING Y N 2  
B8S CL12 C1   SING N N 3  
B8S C5   C4   SING Y N 4  
B8S C1   C2   DOUB Y N 5  
B8S C4   N13  SING N N 6  
B8S C4   C3   DOUB Y N 7  
B8S C2   C3   SING Y N 8  
B8S C94  N13  SING N N 9  
B8S N13  C14  SING N N 10 
B8S C3   N15  SING N N 11 
B8S N15  C14  SING N N 12 
B8S N15  C20  SING N N 13 
B8S C14  O90  DOUB N N 14 
B8S C20  C26  SING N N 15 
B8S C20  C22  SING N N 16 
B8S C26  C25  SING N N 17 
B8S C22  C23  SING N N 18 
B8S N24  C23  SING N N 19 
B8S N24  C25  SING N N 20 
B8S N24  C33  SING N N 21 
B8S C33  C35  SING N N 22 
B8S F84  C75  SING N N 23 
B8S C35  C37  SING N N 24 
B8S C76  C75  DOUB Y N 25 
B8S C76  C77  SING Y N 26 
B8S C75  C74  SING Y N 27 
B8S C37  N39  SING N N 28 
B8S C77  C71  DOUB Y N 29 
B8S C74  C73  DOUB Y N 30 
B8S O88  C41  DOUB N N 31 
B8S N39  C41  SING N N 32 
B8S N39  N45  SING N N 33 
B8S C41  C42  SING N N 34 
B8S N45  C44  DOUB N N 35 
B8S C71  C73  SING Y N 36 
B8S C71  C69  SING N N 37 
B8S C44  C43  SING N N 38 
B8S C42  C43  DOUB N N 39 
B8S C42  C52  SING N N 40 
B8S C69  N67  SING N N 41 
B8S C69  O86  DOUB N N 42 
B8S C52  C54  DOUB Y N 43 
B8S C52  C58  SING Y N 44 
B8S N67  C65  SING N N 45 
B8S C54  C55  SING Y N 46 
B8S C58  C57  DOUB Y N 47 
B8S C55  C56  DOUB Y N 48 
B8S C57  C56  SING Y N 49 
B8S C57  C65  SING N N 50 
B8S C56  CL16 SING N N 51 
B8S C94  H1   SING N N 52 
B8S C94  H2   SING N N 53 
B8S C94  H3   SING N N 54 
B8S C2   H4   SING N N 55 
B8S C6   H5   SING N N 56 
B8S C5   H6   SING N N 57 
B8S C20  H7   SING N N 58 
B8S C22  H8   SING N N 59 
B8S C22  H9   SING N N 60 
B8S C23  H10  SING N N 61 
B8S C23  H11  SING N N 62 
B8S C33  H13  SING N N 63 
B8S C33  H14  SING N N 64 
B8S C35  H15  SING N N 65 
B8S C35  H16  SING N N 66 
B8S C37  H17  SING N N 67 
B8S C37  H18  SING N N 68 
B8S C44  H19  SING N N 69 
B8S C43  H20  SING N N 70 
B8S C54  H21  SING N N 71 
B8S C55  H22  SING N N 72 
B8S C58  H23  SING N N 73 
B8S C65  H24  SING N N 74 
B8S C65  H25  SING N N 75 
B8S N67  H26  SING N N 76 
B8S C77  H27  SING N N 77 
B8S C76  H28  SING N N 78 
B8S C74  H29  SING N N 79 
B8S C73  H30  SING N N 80 
B8S C25  H31  SING N N 81 
B8S C25  H32  SING N N 82 
B8S C26  H33  SING N N 83 
B8S C26  H34  SING N N 84 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
B8S SMILES           ACDLabs              12.01 "CN5C(=O)N(C1CCN(CC1)CCCN2C(C(=CC=N2)c4ccc(Cl)c(CNC(=O)c3ccc(cc3)F)c4)=O)c6cc(Cl)ccc56" 
B8S InChI            InChI                1.03  
"InChI=1S/C34H33Cl2FN6O3/c1-40-30-10-6-25(35)20-31(30)43(34(40)46)27-12-17-41(18-13-27)15-2-16-42-33(45)28(11-14-39-42)23-5-9-29(36)24(19-23)21-38-32(44)22-3-7-26(37)8-4-22/h3-11,14,19-20,27H,2,12-13,15-18,21H2,1H3,(H,38,44)" 
B8S InChIKey         InChI                1.03  LWFRBSJHBRLMJP-UHFFFAOYSA-N 
B8S SMILES_CANONICAL CACTVS               3.385 "CN1C(=O)N(C2CCN(CCCN3N=CC=C(C3=O)c4ccc(Cl)c(CNC(=O)c5ccc(F)cc5)c4)CC2)c6cc(Cl)ccc16" 
B8S SMILES           CACTVS               3.385 "CN1C(=O)N(C2CCN(CCCN3N=CC=C(C3=O)c4ccc(Cl)c(CNC(=O)c5ccc(F)cc5)c4)CC2)c6cc(Cl)ccc16" 
B8S SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "CN1c2ccc(cc2N(C1=O)C3CCN(CC3)CCCN4C(=O)C(=CC=N4)c5ccc(c(c5)CNC(=O)c6ccc(cc6)F)Cl)Cl" 
B8S SMILES           "OpenEye OEToolkits" 2.0.6 "CN1c2ccc(cc2N(C1=O)C3CCN(CC3)CCCN4C(=O)C(=CC=N4)c5ccc(c(c5)CNC(=O)c6ccc(cc6)F)Cl)Cl" 
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
B8S "SYSTEMATIC NAME" ACDLabs              12.01 "N-{[2-chloro-5-(2-{3-[4-(6-chloro-3-methyl-2-oxo-2,3-dihydro-1H-benzimidazol-1-yl)piperidin-1-yl]propyl}-3-oxo-2,3-dihydropyridazin-4-yl)phenyl]methyl}-4-fluorobenzamide"        
B8S "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 "~{N}-[[2-chloranyl-5-[2-[3-[4-(6-chloranyl-3-methyl-2-oxidanylidene-benzimidazol-1-yl)piperidin-1-yl]propyl]-3-oxidanylidene-pyridazin-4-yl]phenyl]methyl]-4-fluoranyl-benzamide" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
B8S "Create component" 2017-08-07 RCSB 
B8S "Initial release"  2017-12-20 RCSB 
# 
