data_RKS
#

_chem_comp.id                                   RKS
_chem_comp.name                                 "methyl N~6~-acetyl-N~2~-[(2,3-dihydroxyphenyl)carbonyl]-N~6~-hydroxy-D-lysyl-N~6~-acetyl-N~6~-hydroxy-L-lysinate"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C24 H36 N4 O10"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        "2,3-catecholamide bis-lysine(hydroxamate) methyl ester"
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2009-06-19
_chem_comp.pdbx_modified_date                   2021-03-13
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       540.563
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    RKS
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       3HWE
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
RKS  C1    C1    C  0  1  Y  N  N  31.300  75.971  67.415   4.240  -1.606   0.252  C1    RKS   1  
RKS  N1    N1    N  0  1  N  N  N  30.411  77.333  69.264   2.360  -1.024  -1.201  N1    RKS   2  
RKS  O1    O1    O  0  1  N  N  N  29.423  77.373  66.866   3.969  -1.477   2.623  O1    RKS   3  
RKS  C2    C2    C  0  1  Y  N  N  30.356  76.453  66.503   4.751  -1.748   1.548  C2    RKS   4  
RKS  N4    N4    N  0  1  N  N  N  28.222  78.890  71.230  -1.257  -1.603  -1.123  N4    RKS   5  
RKS  O2    O2    O  0  1  N  N  N  29.394  76.480  64.332   6.568  -2.310   2.983  O2    RKS   6  
RKS  C4    C4    C  0  1  Y  N  N  30.333  75.998  65.193   6.065  -2.169   1.727  C4    RKS   7  
RKS  O3    O3    O  0  1  N  N  N  32.244  76.091  69.583   2.142  -0.915   1.007  O3    RKS   8  
RKS  C5    C5    C  0  1  Y  N  N  31.259  75.057  64.760   6.860  -2.445   0.627  C5    RKS   9  
RKS  N2    N2    N  0  1  N  N  N  25.534  76.829  66.985  -6.669   1.584   0.832  N2    RKS  10  
RKS  C6    C6    C  0  1  Y  N  N  32.212  74.575  65.652   6.354  -2.305  -0.654  C6    RKS  11  
RKS  C7    C7    C  0  1  Y  N  N  32.235  75.033  66.969   5.053  -1.894  -0.848  C7    RKS  12  
RKS  O4    O4    O  0  1  N  N  N  29.327  79.949  69.555   0.443  -2.306   0.117  O4    RKS  13  
RKS  C8    C8    C  0  1  N  N  N  31.349  76.473  68.847   2.849  -1.160   0.048  C8    RKS  14  
RKS  O5    O5    O  0  1  N  N  N  27.184  79.249  73.725  -2.829  -4.917  -0.766  O5    RKS  15  
RKS  O6    O6    O  0  1  N  N  N  26.315  77.936  66.653  -6.956   2.703   0.014  O6    RKS  16  
RKS  O7    O7    O  0  1  N  N  N  26.621  75.665  65.422  -7.413   0.023   2.222  O7    RKS  17  
RKS  O8    O8    O  0  1  N  N  N  26.435  81.379  73.236  -1.319  -4.028  -2.113  O8    RKS  18  
RKS  C9    C9    C  0  1  N  N  R  30.267  77.991  70.565   0.978  -0.581  -1.402  C9    RKS  19  
RKS  C10   C10   C  0  1  N  N  N  29.699  77.061  71.657   0.790   0.804  -0.779  C10   RKS  20  
RKS  C11   C11   C  0  1  N  N  N  29.235  79.063  70.391   0.037  -1.559  -0.748  C11   RKS  21  
RKS  C12   C12   C  0  1  N  N  S  27.026  79.681  71.403  -2.172  -2.553  -0.486  C12   RKS  22  
RKS  C13   C13   C  0  1  N  N  N  30.627  76.716  72.818   1.655   1.821  -1.527  C13   RKS  23  
RKS  C14   C14   C  0  1  N  N  N  29.805  76.355  74.055   1.467   3.206  -0.904  C14   RKS  24  
RKS  C15   C15   C  0  1  N  N  N  26.895  80.055  72.852  -2.075  -3.886  -1.181  C15   RKS  25  
RKS  C16   C16   C  0  1  N  N  N  25.891  78.753  70.977  -3.606  -2.027  -0.589  C16   RKS  26  
RKS  C17   C17   C  0  1  N  N  N  26.045  78.326  69.517  -3.734  -0.736   0.222  C17   RKS  27  
RKS  C18   C18   C  0  1  N  N  N  24.710  78.272  68.777  -5.168  -0.211   0.120  C18   RKS  28  
RKS  C19   C19   C  0  1  N  N  N  24.525  76.952  68.037  -5.297   1.081   0.930  C19   RKS  29  
RKS  C20   C20   C  0  1  N  N  N  25.767  75.713  66.293  -7.659   0.981   1.521  C20   RKS  30  
RKS  C21   C21   C  0  1  N  N  N  24.931  74.515  66.636  -9.070   1.499   1.420  C21   RKS  31  
RKS  HN1   HN1   H  0  1  N  N  N  29.707  77.559  68.590   2.924  -1.219  -1.965  HN1   RKS  32  
RKS  HO1   HO1   H  0  1  N  N  N  28.873  77.578  66.119   3.471  -2.239   2.949  HO1   RKS  33  
RKS  HN2   HN2   H  0  1  N  N  N  28.298  78.095  71.831  -1.582  -1.005  -1.814  HN2   RKS  34  
RKS  HO2   HO2   H  0  1  N  N  N  29.508  76.075  63.480   6.443  -3.192   3.360  HO2   RKS  35  
RKS  H5    H5    H  0  1  N  N  N  32.936  73.844  65.323   6.982  -2.522  -1.506  H5    RKS  36  
RKS  H6    H6    H  0  1  N  N  N  32.984  74.659  67.652   4.665  -1.786  -1.850  H6    RKS  37  
RKS  C22   C22   C  0  1  N  N  N  27.530  78.279  73.460  -2.684  -6.171  -1.482  C22   RKS  38  
RKS  HO7   HO7   H  0  1  N  N  N  26.916  77.702  65.956  -7.888   2.961   0.013  HO7   RKS  39  
RKS  HO8   HO8   H  0  1  N  N  N  31.263  78.341  70.873   0.765  -0.531  -2.470  HO8   RKS  40  
RKS  H12   H12   H  0  1  N  N  N  28.819  77.564  72.085  -0.258   1.095  -0.851  H12   RKS  41  
RKS  H13   H13   H  0  1  N  N  N  29.429  76.114  71.167   1.088   0.774   0.269  H13   RKS  42  
RKS  H13A  H13A  H  0  0  N  N  N  27.029  80.614  70.821  -1.903  -2.670   0.563  H13A  RKS  43  
RKS  H17   H17   H  0  1  N  N  N  31.257  75.859  72.537   2.703   1.530  -1.455  H17   RKS  44  
RKS  H18   H18   H  0  1  N  N  N  31.263  77.584  73.045   1.357   1.851  -2.575  H18   RKS  45  
RKS  C23   C23   C  0  1  N  N  N  29.741  75.221  74.152   2.331   4.223  -1.651  C23   RKS  46  
RKS  H18A  H18A  H  0  0  N  N  N  30.288  76.773  74.951   0.419   3.497  -0.975  H18A  RKS  47  
RKS  H19   H19   H  0  1  N  N  N  28.792  76.772  73.956   1.765   3.176   0.144  H19   RKS  48  
RKS  H19A  H19A  H  0  0  N  N  N  25.906  77.856  71.614  -3.845  -1.826  -1.633  H19A  RKS  49  
RKS  H19B  H19B  H  0  0  N  N  N  24.934  79.283  71.094  -4.295  -2.774  -0.195  H19B  RKS  50  
RKS  H30   H30   H  0  1  N  N  N  26.695  79.053  69.009  -3.495  -0.937   1.266  H30   RKS  51  
RKS  H30A  H30A  H  0  0  N  N  N  26.497  77.323  69.494  -3.045   0.010  -0.171  H30A  RKS  52  
RKS  H31   H31   H  0  1  N  N  N  23.896  78.383  69.509  -5.407  -0.009  -0.925  H31   RKS  53  
RKS  H31A  H31A  H  0  0  N  N  N  24.679  79.093  68.046  -5.858  -0.957   0.513  H31A  RKS  54  
RKS  H32   H32   H  0  1  N  N  N  23.522  76.924  67.586  -4.607   1.827   0.537  H32   RKS  55  
RKS  H32A  H32A  H  0  0  N  N  N  24.633  76.118  68.746  -5.057   0.879   1.974  H32A  RKS  56  
RKS  H33   H33   H  0  1  N  N  N  25.224  73.668  65.998  -9.726   0.890   2.042  H33   RKS  57  
RKS  H33A  H33A  H  0  0  N  N  N  25.087  74.249  67.692  -9.103   2.533   1.762  H33A  RKS  58  
RKS  H37   H37   H  0  1  N  N  N  23.869  74.749  66.470  -9.403   1.449   0.383  H37   RKS  59  
RKS  N3    N3    N  0  1  N  N  N  28.963  74.591  75.322   2.151   5.549  -1.055  N3    RKS  60  
RKS  C24   C24   C  0  1  N  N  N  29.653  74.290  76.586   2.727   5.839   0.129  C24   RKS  61  
RKS  O9    O9    O  0  1  N  N  N  27.532  74.290  75.177   1.372   6.525  -1.722  O9    RKS  62  
RKS  O10   O10   O  0  1  N  N  N  29.744  72.873  76.753   3.394   5.002   0.700  O10   RKS  63  
RKS  C25   C25   C  0  1  N  N  N  28.861  74.896  77.759   2.541   7.203   0.743  C25   RKS  64  
RKS  H311  H311  H  0  0  N  N  N  27.738  77.701  74.373  -2.943  -6.023  -2.530  H311  RKS  65  
RKS  H321  H321  H  0  0  N  N  N  26.759  77.764  72.868  -1.652  -6.514  -1.408  H321  RKS  66  
RKS  H331  H331  H  0  0  N  N  N  28.451  78.368  72.865  -3.347  -6.918  -1.046  H331  RKS  67  
RKS  H34   H34   H  0  1  N  N  N  29.253  74.863  73.233   3.379   3.931  -1.580  H34   RKS  68  
RKS  H35   H35   H  0  1  N  N  N  30.777  74.864  74.247   2.033   4.253  -2.699  H35   RKS  69  
RKS  H36   H36   H  0  1  N  N  N  27.205  73.908  75.983   1.311   7.368  -1.251  H36   RKS  70  
RKS  H371  H371  H  0  0  N  N  N  28.553  74.095  78.447   1.658   7.197   1.381  H371  RKS  71  
RKS  H38   H38   H  0  1  N  N  N  29.495  75.617  78.296   3.418   7.455   1.339  H38   RKS  72  
RKS  H39   H39   H  0  1  N  N  N  27.969  75.410  77.372   2.414   7.943  -0.047  H39   RKS  73  
RKS  H4    H4    H  0  1  N  N  N  31.239  74.703  63.740   7.879  -2.772   0.770  H4    RKS  74  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
RKS  C1   C8    SING  N  N   1  
RKS  N1   C9    SING  N  N   2  
RKS  N1   HN1   SING  N  N   3  
RKS  O1   HO1   SING  N  N   4  
RKS  C2   C1    SING  Y  N   5  
RKS  C2   O1    SING  N  N   6  
RKS  N4   C12   SING  N  N   7  
RKS  N4   HN2   SING  N  N   8  
RKS  O2   C4    SING  N  N   9  
RKS  O2   HO2   SING  N  N  10  
RKS  C4   C2    DOUB  Y  N  11  
RKS  C5   C4    SING  Y  N  12  
RKS  C5   C6    DOUB  Y  N  13  
RKS  N2   C19   SING  N  N  14  
RKS  C6   C7    SING  Y  N  15  
RKS  C6   H5    SING  N  N  16  
RKS  C7   C1    DOUB  Y  N  17  
RKS  C7   H6    SING  N  N  18  
RKS  O4   C11   DOUB  N  N  19  
RKS  C8   N1    SING  N  N  20  
RKS  C8   O3    DOUB  N  N  21  
RKS  O5   C22   SING  N  N  22  
RKS  O6   N2    SING  N  N  23  
RKS  O6   HO7   SING  N  N  24  
RKS  O7   C20   DOUB  N  N  25  
RKS  C9   C10   SING  N  N  26  
RKS  C9   HO8   SING  N  N  27  
RKS  C10  C13   SING  N  N  28  
RKS  C10  H12   SING  N  N  29  
RKS  C10  H13   SING  N  N  30  
RKS  C11  N4    SING  N  N  31  
RKS  C11  C9    SING  N  N  32  
RKS  C12  C15   SING  N  N  33  
RKS  C12  H13A  SING  N  N  34  
RKS  C13  C14   SING  N  N  35  
RKS  C13  H17   SING  N  N  36  
RKS  C13  H18   SING  N  N  37  
RKS  C14  C23   SING  N  N  38  
RKS  C14  H18A  SING  N  N  39  
RKS  C14  H19   SING  N  N  40  
RKS  C15  O5    SING  N  N  41  
RKS  C15  O8    DOUB  N  N  42  
RKS  C16  C12   SING  N  N  43  
RKS  C16  H19A  SING  N  N  44  
RKS  C16  H19B  SING  N  N  45  
RKS  C17  C16   SING  N  N  46  
RKS  C17  H30   SING  N  N  47  
RKS  C17  H30A  SING  N  N  48  
RKS  C18  C17   SING  N  N  49  
RKS  C18  H31   SING  N  N  50  
RKS  C18  H31A  SING  N  N  51  
RKS  C19  C18   SING  N  N  52  
RKS  C19  H32   SING  N  N  53  
RKS  C19  H32A  SING  N  N  54  
RKS  C20  N2    SING  N  N  55  
RKS  C20  C21   SING  N  N  56  
RKS  C21  H33   SING  N  N  57  
RKS  C21  H33A  SING  N  N  58  
RKS  C21  H37   SING  N  N  59  
RKS  C22  H311  SING  N  N  60  
RKS  C22  H321  SING  N  N  61  
RKS  C22  H331  SING  N  N  62  
RKS  C23  N3    SING  N  N  63  
RKS  C23  H34   SING  N  N  64  
RKS  C23  H35   SING  N  N  65  
RKS  N3   C24   SING  N  N  66  
RKS  N3   O9    SING  N  N  67  
RKS  C24  O10   DOUB  N  N  68  
RKS  C24  C25   SING  N  N  69  
RKS  O9   H36   SING  N  N  70  
RKS  C25  H371  SING  N  N  71  
RKS  C25  H38   SING  N  N  72  
RKS  C25  H39   SING  N  N  73  
RKS  C5   H4    SING  N  N  74  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
RKS  SMILES            ACDLabs               11.02  "O=C(OC)C(NC(=O)C(NC(=O)c1cccc(O)c1O)CCCCN(O)C(=O)C)CCCCN(O)C(=O)C"  
RKS  SMILES_CANONICAL  CACTVS                3.352  "COC(=O)[C@H](CCCCN(O)C(C)=O)NC(=O)[C@@H](CCCCN(O)C(C)=O)NC(=O)c1cccc(O)c1O"  
RKS  SMILES            CACTVS                3.352  "COC(=O)[CH](CCCCN(O)C(C)=O)NC(=O)[CH](CCCCN(O)C(C)=O)NC(=O)c1cccc(O)c1O"  
RKS  SMILES_CANONICAL  "OpenEye OEToolkits"  1.7.0  "CC(=O)N(CCCC[C@H](C(=O)N[C@@H](CCCCN(C(=O)C)O)C(=O)OC)NC(=O)c1cccc(c1O)O)O"  
RKS  SMILES            "OpenEye OEToolkits"  1.7.0  "CC(=O)N(CCCCC(C(=O)NC(CCCCN(C(=O)C)O)C(=O)OC)NC(=O)c1cccc(c1O)O)O"  
RKS  InChI             InChI                 1.03   "InChI=1S/C24H36N4O10/c1-15(29)27(36)13-6-4-10-18(25-22(33)17-9-8-12-20(31)21(17)32)23(34)26-19(24(35)38-3)11-5-7-14-28(37)16(2)30/h8-9,12,18-19,31-32,36-37H,4-7,10-11,13-14H2,1-3H3,(H,25,33)(H,26,34)/t18-,19+/m1/s1"  
RKS  InChIKey          InChI                 1.03   WXZHDJXCVBLPHY-MOPGFXCFSA-N  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
RKS  "SYSTEMATIC NAME"  ACDLabs               11.02  "methyl N~6~-acetyl-N~2~-[(2,3-dihydroxyphenyl)carbonyl]-N~6~-hydroxy-D-lysyl-N~6~-acetyl-N~6~-hydroxy-L-lysinate"  
RKS  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.6.1  "methyl (2S)-2-[[(2R)-2-[(2,3-dihydroxyphenyl)carbonylamino]-6-[ethanoyl(hydroxy)amino]hexanoyl]amino]-6-[ethanoyl(hydroxy)amino]hexanoate"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
RKS  "Create component"      2009-06-19  RCSB  
RKS  "Modify aromatic_flag"  2011-06-04  RCSB  
RKS  "Modify descriptor"     2011-06-04  RCSB  
RKS  "Modify synonyms"       2021-03-13  RCSB  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     RKS
_pdbx_chem_comp_synonyms.name        "2,3-catecholamide bis-lysine(hydroxamate) methyl ester"
_pdbx_chem_comp_synonyms.provenance  PDB
_pdbx_chem_comp_synonyms.type        ?
##
