data_SVS
# 
_chem_comp.id                                    SVS 
_chem_comp.name                                  "5'-deoxy-5'-({[2-(2-hydroxyphenyl)ethyl]sulfonyl}amino)adenosine" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C18 H22 N6 O6 S" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2011-04-12 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        450.469 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     SVS 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        3RG2 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
SVS S      S      S 0 1 N N N N N N -108.650 -75.227 41.849 -3.023 -1.762 -1.222 S      SVS 1  
SVS N1     N1     N 0 1 Y N N N N N -101.456 -68.056 40.921 7.270  1.610  -0.474 N1     SVS 2  
SVS C2     C2     C 0 1 Y N N N N N -102.656 -67.542 40.610 7.059  0.308  -0.533 C2     SVS 3  
SVS N3     N3     N 0 1 Y N N N N N -103.753 -68.316 40.538 5.859  -0.220 -0.409 N3     SVS 4  
SVS C4     C4     C 0 1 Y N N N N N -103.678 -69.649 40.781 4.796  0.554  -0.215 C4     SVS 5  
SVS C5     C5     C 0 1 Y N N N N N -102.451 -70.210 41.106 4.968  1.946  -0.144 C5     SVS 6  
SVS C6     C6     C 0 1 Y N N N N N -101.319 -69.384 41.175 6.268  2.462  -0.283 C6     SVS 7  
SVS N6     N6     N 0 1 N N N N N N -100.092 -69.884 41.498 6.500  3.825  -0.222 N6     SVS 8  
SVS N7     N7     N 0 1 Y N N N N N -102.667 -71.532 41.299 3.744  2.491  0.055  N7     SVS 9  
SVS C8     C8     C 0 1 Y N N N N N -103.984 -71.777 41.100 2.853  1.544  0.110  C8     SVS 10 
SVS N9     N9     N 0 1 Y N N N N N -104.589 -70.629 40.778 3.452  0.330  -0.051 N9     SVS 11 
SVS "C1'"  "C1'"  C 0 1 N N R N N N -106.034 -70.477 40.505 2.784  -0.973 -0.051 "C1'"  SVS 12 
SVS C14    C14    C 0 1 Y N N N N N -104.376 -77.663 41.463 -5.809 2.123  -0.304 C14    SVS 13 
SVS O14    O14    O 0 1 N N N N N N -105.262 -78.475 40.796 -5.422 2.244  -1.602 O14    SVS 14 
SVS C15    C15    C 0 1 Y N N N N N -103.015 -77.932 41.267 -6.302 3.225  0.379  C15    SVS 15 
SVS C16    C16    C 0 1 Y N N N N N -102.023 -77.173 41.887 -6.700 3.099  1.696  C16    SVS 16 
SVS C17    C17    C 0 1 Y N N N N N -102.400 -76.130 42.724 -6.608 1.875  2.333  C17    SVS 17 
SVS C18    C18    C 0 1 Y N N N N N -103.754 -75.853 42.928 -6.117 0.775  1.654  C18    SVS 18 
SVS C19    C19    C 0 1 Y N N N N N -104.766 -76.589 42.298 -5.717 0.896  0.337  C19    SVS 19 
SVS O1P    O1P    O 0 1 N N N N N N -109.791 -75.917 41.287 -3.251 -1.627 -2.618 O1P    SVS 20 
SVS "C2'"  "C2'"  C 0 1 N N R N N N -106.396 -70.300 39.045 2.770  -1.570 1.374  "C2'"  SVS 21 
SVS "O2'"  "O2'"  O 0 1 N N N N N N -107.210 -69.129 38.977 3.829  -2.515 1.532  "O2'"  SVS 22 
SVS C21    C21    C 0 1 N N N N N N -106.215 -76.204 42.651 -5.188 -0.304 -0.404 C21    SVS 23 
SVS C22    C22    C 0 1 N N N N N N -107.178 -75.969 41.468 -3.660 -0.317 -0.330 C22    SVS 24 
SVS O2P    O2P    O 0 1 N N N N N N -108.827 -75.134 43.265 -3.363 -2.960 -0.538 O2P    SVS 25 
SVS "C3'"  "C3'"  C 0 1 N N S N N N -107.277 -71.477 38.700 1.396  -2.270 1.475  "C3'"  SVS 26 
SVS "O3'"  "O3'"  O 0 1 N N N N N N -108.418 -71.075 37.935 1.564  -3.672 1.696  "O3'"  SVS 27 
SVS "C4'"  "C4'"  C 0 1 N N R N N N -107.738 -71.953 40.051 0.743  -2.014 0.098  "C4'"  SVS 28 
SVS "O4'"  "O4'"  O 0 1 N N N N N N -106.691 -71.648 40.956 1.391  -0.825 -0.402 "O4'"  SVS 29 
SVS "C5'"  "C5'"  C 0 1 N N N N N N -107.955 -73.446 40.074 -0.760 -1.775 0.258  "C5'"  SVS 30 
SVS "N5'"  "N5'"  N 0 1 N N N N N N -108.662 -73.740 41.296 -1.378 -1.653 -1.064 "N5'"  SVS 31 
SVS H2     H2     H 0 1 N N N N N N -102.742 -66.484 40.413 7.902  -0.349 -0.689 H2     SVS 32 
SVS HN6    HN6    H 0 1 N N N N N N -99.420  -69.143 41.501 7.402  4.168  -0.319 HN6    SVS 33 
SVS HN6A   HN6A   H 0 0 N N N N N N -100.131 -70.302 42.405 5.760  4.437  -0.082 HN6A   SVS 34 
SVS H8     H8     H 0 1 N N N N N N -104.466 -72.740 41.187 1.794  1.697  0.261  H8     SVS 35 
SVS "H1'"  "H1'"  H 0 1 N N N N N N -106.344 -69.559 41.026 3.279  -1.653 -0.743 "H1'"  SVS 36 
SVS HO14   HO14   H 0 0 N N N N N N -104.782 -79.126 40.297 -6.130 2.080  -2.240 HO14   SVS 37 
SVS H15    H15    H 0 1 N N N N N N -102.727 -78.747 40.620 -6.374 4.181  -0.118 H15    SVS 38 
SVS H16    H16    H 0 1 N N N N N N -100.979 -77.392 41.719 -7.083 3.957  2.228  H16    SVS 39 
SVS H17    H17    H 0 1 N N N N N N -101.646 -75.534 43.217 -6.919 1.778  3.362  H17    SVS 40 
SVS H18    H18    H 0 1 N N N N N N -104.029 -75.047 43.592 -6.045 -0.180 2.154  H18    SVS 41 
SVS "H2'"  "H2'"  H 0 1 N N N N N N -105.519 -70.227 38.385 2.850  -0.779 2.120  "H2'"  SVS 42 
SVS "HO2'" "HO2'" H 0 0 N N N N N N -107.466 -68.973 38.076 3.867  -2.921 2.409  "HO2'" SVS 43 
SVS H21    H21    H 0 1 N N N N N N -106.632 -77.027 43.250 -5.581 -1.214 0.050  H21    SVS 44 
SVS H22    H22    H 0 1 N N N N N N -107.409 -76.952 41.032 -3.347 -0.367 0.713  H22    SVS 45 
SVS "H3'"  "H3'"  H 0 1 N N N N N N -106.749 -72.232 38.099 0.798  -1.826 2.270  "H3'"  SVS 46 
SVS "HO3'" "HO3'" H 0 0 N N N N N N -108.950 -71.836 37.735 2.024  -3.888 2.519  "HO3'" SVS 47 
SVS "H4'"  "H4'"  H 0 1 N N N N N N -108.691 -71.469 40.309 0.923  -2.856 -0.570 "H4'"  SVS 48 
SVS "H5'"  "H5'"  H 0 1 N N N N N N -108.547 -73.762 39.202 -1.206 -2.614 0.792  "H5'"  SVS 49 
SVS "H5'A" "H5'A" H 0 0 N N N N N N -106.991 -73.975 40.051 -0.924 -0.857 0.822  "H5'A" SVS 50 
SVS "HN5'" "HN5'" H 0 0 N N N N N N -108.249 -73.170 42.006 -0.824 -1.509 -1.847 "HN5'" SVS 51 
SVS H211   H211   H 0 0 N N N N N N -106.171 -75.266 43.224 -5.501 -0.254 -1.447 H211   SVS 52 
SVS H221   H221   H 0 0 N N N N N N -106.660 -75.320 40.747 -3.267 0.593  -0.784 H221   SVS 53 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
SVS S     O2P    DOUB N N 1  
SVS N1    C6     SING Y N 2  
SVS C2    N1     DOUB Y N 3  
SVS C2    H2     SING N N 4  
SVS N3    C2     SING Y N 5  
SVS N3    C4     DOUB Y N 6  
SVS C4    C5     SING Y N 7  
SVS C5    C6     DOUB Y N 8  
SVS C5    N7     SING Y N 9  
SVS C6    N6     SING N N 10 
SVS N6    HN6    SING N N 11 
SVS N6    HN6A   SING N N 12 
SVS C8    N7     DOUB Y N 13 
SVS C8    H8     SING N N 14 
SVS N9    C4     SING Y N 15 
SVS N9    C8     SING Y N 16 
SVS "C1'" N9     SING N N 17 
SVS "C1'" "O4'"  SING N N 18 
SVS "C1'" "H1'"  SING N N 19 
SVS C14   C19    SING Y N 20 
SVS O14   C14    SING N N 21 
SVS O14   HO14   SING N N 22 
SVS C15   C14    DOUB Y N 23 
SVS C15   C16    SING Y N 24 
SVS C15   H15    SING N N 25 
SVS C16   C17    DOUB Y N 26 
SVS C16   H16    SING N N 27 
SVS C17   C18    SING Y N 28 
SVS C17   H17    SING N N 29 
SVS C18   H18    SING N N 30 
SVS C19   C18    DOUB Y N 31 
SVS C19   C21    SING N N 32 
SVS O1P   S      DOUB N N 33 
SVS "C2'" "C1'"  SING N N 34 
SVS "C2'" "H2'"  SING N N 35 
SVS "O2'" "C2'"  SING N N 36 
SVS "O2'" "HO2'" SING N N 37 
SVS C21   H21    SING N N 38 
SVS C22   S      SING N N 39 
SVS C22   C21    SING N N 40 
SVS C22   H22    SING N N 41 
SVS "C3'" "C2'"  SING N N 42 
SVS "C3'" "C4'"  SING N N 43 
SVS "C3'" "H3'"  SING N N 44 
SVS "O3'" "C3'"  SING N N 45 
SVS "O3'" "HO3'" SING N N 46 
SVS "C4'" "C5'"  SING N N 47 
SVS "C4'" "O4'"  SING N N 48 
SVS "C4'" "H4'"  SING N N 49 
SVS "C5'" "N5'"  SING N N 50 
SVS "C5'" "H5'"  SING N N 51 
SVS "C5'" "H5'A" SING N N 52 
SVS "N5'" S      SING N N 53 
SVS "N5'" "HN5'" SING N N 54 
SVS C21   H211   SING N N 55 
SVS C22   H221   SING N N 56 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
SVS SMILES           ACDLabs              12.01 "O=S(=O)(NCC3OC(n2cnc1c(ncnc12)N)C(O)C3O)CCc4ccccc4O"                                                                                                                                             
SVS SMILES_CANONICAL CACTVS               3.370 "Nc1ncnc2n(cnc12)[C@@H]3O[C@H](CN[S](=O)(=O)CCc4ccccc4O)[C@@H](O)[C@H]3O"                                                                                                                         
SVS SMILES           CACTVS               3.370 "Nc1ncnc2n(cnc12)[CH]3O[CH](CN[S](=O)(=O)CCc4ccccc4O)[CH](O)[CH]3O"                                                                                                                               
SVS SMILES_CANONICAL "OpenEye OEToolkits" 1.7.2 "c1ccc(c(c1)CCS(=O)(=O)NC[C@@H]2[C@H]([C@H]([C@@H](O2)n3cnc4c3ncnc4N)O)O)O"                                                                                                                       
SVS SMILES           "OpenEye OEToolkits" 1.7.2 "c1ccc(c(c1)CCS(=O)(=O)NCC2C(C(C(O2)n3cnc4c3ncnc4N)O)O)O"                                                                                                                                         
SVS InChI            InChI                1.03  "InChI=1S/C18H22N6O6S/c19-16-13-17(21-8-20-16)24(9-22-13)18-15(27)14(26)12(30-18)7-23-31(28,29)6-5-10-3-1-2-4-11(10)25/h1-4,8-9,12,14-15,18,23,25-27H,5-7H2,(H2,19,20,21)/t12-,14-,15-,18-/m1/s1" 
SVS InChIKey         InChI                1.03  NIEGSPNRJDKALY-SCFUHWHPSA-N                                                                                                                                                                       
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
SVS "SYSTEMATIC NAME" ACDLabs              12.01 "5'-deoxy-5'-({[2-(2-hydroxyphenyl)ethyl]sulfonyl}amino)adenosine"                                                  
SVS "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.2 "N-[[(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl]-2-(2-hydroxyphenyl)ethanesulfonamide" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
SVS "Create component"  2011-05-09 RCSB 
SVS "Modify formula"    2011-05-09 RCSB 
SVS "Modify descriptor" 2011-06-04 RCSB 
SVS "Modify PCM"        2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            SVS 
_pdbx_chem_comp_pcm.modified_residue_id                4HH 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               C21 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   SU 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
