data_2IU
# 
_chem_comp.id                                    2IU 
_chem_comp.name                                  "[[(2R,3S,5R)-5-[5-(1-benzofuran-2-yl)-2,4-bis(oxidanylidene)pyrimidin-1-yl]-3-oxidanyl-oxolan-2-yl]methoxy-oxidanyl-phosphoryl] phosphono hydrogen phosphate" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C17 H19 N2 O15 P3" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         BFdUTP 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2021-06-21 
_chem_comp.pdbx_modified_date                    2022-06-24 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        584.258 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     2IU 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        7OWF 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
2IU C10 C1  C 0 1 Y N N 19.830 -14.857 -5.747  6.094  2.165  0.562  C10 2IU 1  
2IU C13 C2  C 0 1 Y N N 21.961 -13.689 -8.392  9.022  1.727  -1.502 C13 2IU 2  
2IU C15 C3  C 0 1 Y N N 21.737 -11.775 -6.954  9.135  4.026  -0.806 C15 2IU 3  
2IU C12 C4  C 0 1 Y N N 21.092 -14.366 -7.549  7.844  1.565  -0.785 C12 2IU 4  
2IU C14 C5  C 0 1 Y N N 22.283 -12.380 -8.074  9.659  2.950  -1.509 C14 2IU 5  
2IU C16 C6  C 0 1 Y N N 20.841 -12.463 -6.140  7.977  3.889  -0.093 C16 2IU 6  
2IU N   N1  N 0 1 N N N 19.172 -19.573 -7.070  3.027  -1.395 0.126  N   2IU 7  
2IU C   C7  C 0 1 N N S 17.588 -19.499 -10.062 0.793  -3.983 -1.149 C   2IU 8  
2IU O   O1  O 0 1 N N N 16.598 -19.784 -11.054 0.673  -4.673 -2.395 O   2IU 9  
2IU C1  C8  C 0 1 N N N 17.446 -20.347 -8.793  2.238  -3.477 -0.948 C1  2IU 10 
2IU C11 C9  C 0 1 Y N N 20.504 -13.781 -6.441  7.318  2.659  -0.073 C11 2IU 11 
2IU C2  C10 C 0 1 N N R 18.890 -20.442 -8.262  2.089  -1.942 -0.858 C2  2IU 12 
2IU C3  C11 C 0 1 N N R 18.956 -19.947 -10.552 -0.059 -2.695 -1.157 C3  2IU 13 
2IU C4  C12 C 0 1 N N N 19.601 -19.044 -11.575 -1.396 -2.935 -0.453 C4  2IU 14 
2IU C5  C13 C 0 1 N N N 19.623 -18.275 -7.231  4.022  -0.560 -0.292 C5  2IU 15 
2IU C6  C14 C 0 1 N N N 19.686 -17.370 -6.204  4.895  -0.044 0.623  C6  2IU 16 
2IU C7  C15 C 0 1 N N N 19.330 -17.820 -4.875  4.723  -0.414 2.036  C7  2IU 17 
2IU C8  C16 C 0 1 N N N 18.820 -20.058 -5.820  2.886  -1.722 1.421  C8  2IU 18 
2IU C9  C17 C 0 1 Y N N 20.055 -15.976 -6.458  5.984  0.862  0.205  C9  2IU 19 
2IU N1  N2  N 0 1 N N N 18.924 -19.147 -4.791  3.713  -1.246 2.368  N1  2IU 20 
2IU O1  O2  O 0 1 N N N 19.739 -20.022 -9.332  0.727  -1.728 -0.426 O1  2IU 21 
2IU O10 O3  O 0 1 N N N 17.572 -12.582 -12.944 -8.421 2.093  -1.028 O10 2IU 22 
2IU O11 O4  O 0 1 N N N 15.984 -13.508 -14.653 -7.410 3.392  0.885  O11 2IU 23 
2IU O12 O5  O 0 1 N N N 19.390 -17.106 -3.885  5.476  0.020  2.888  O12 2IU 24 
2IU O13 O6  O 0 1 N N N 18.431 -21.214 -5.645  1.981  -2.465 1.747  O13 2IU 25 
2IU O14 O7  O 0 1 Y N N 20.813 -15.716 -7.592  7.016  0.518  -0.589 O14 2IU 26 
2IU O2  O8  O 0 1 N N N 19.772 -17.765 -10.943 -2.214 -1.770 -0.572 O2  2IU 27 
2IU O3  O9  O 0 1 N N N 20.061 -16.447 -13.050 -3.639 -1.977 1.501  O3  2IU 28 
2IU O4  O10 O 0 1 N N N 20.477 -15.296 -10.778 -4.661 -2.725 -0.683 O4  2IU 29 
2IU O5  O11 O 0 1 N N N 18.133 -16.050 -11.408 -4.266 -0.180 -0.157 O5  2IU 30 
2IU O6  O12 O 0 1 N N N 17.223 -17.258 -13.525 -6.601 -0.192 0.802  O6  2IU 31 
2IU O7  O13 O 0 1 N N N 15.792 -17.102 -11.541 -4.894 1.282  1.936  O7  2IU 32 
2IU O8  O14 O 0 1 N N N 16.429 -14.918 -12.735 -5.870 1.886  -0.430 O8  2IU 33 
2IU O9  O15 O 0 1 N N N 18.263 -14.554 -14.428 -6.802 4.120  -1.454 O9  2IU 34 
2IU P   P1  P 0 1 N N N 19.696 -16.320 -11.524 -3.694 -1.670 0.054  P   2IU 35 
2IU P1  P2  P 0 1 N N N 16.839 -16.386 -12.276 -5.433 0.680  0.543  P1  2IU 36 
2IU P2  P3  P 0 1 N N N 17.065 -13.843 -13.731 -7.132 2.884  -0.477 P2  2IU 37 
2IU H1  H1  H 0 1 N N N 19.257 -14.777 -4.835  5.419  2.725  1.193  H1  2IU 38 
2IU H2  H2  H 0 1 N N N 22.373 -14.167 -9.268  9.438  0.897  -2.053 H2  2IU 39 
2IU H3  H3  H 0 1 N N N 22.009 -10.759 -6.709  9.646  4.977  -0.822 H3  2IU 40 
2IU H4  H4  H 0 1 N N N 22.964 -11.827 -8.704  10.575 3.072  -2.068 H4  2IU 41 
2IU H5  H5  H 0 1 N N N 20.409 -11.977 -5.278  7.573  4.729  0.453  H5  2IU 42 
2IU H6  H6  H 0 1 N N N 17.607 -18.430 -9.803  0.497  -4.632 -0.325 H6  2IU 43 
2IU H7  H7  H 0 1 N N N 15.746 -19.502 -10.742 1.233  -5.458 -2.465 H7  2IU 44 
2IU H8  H8  H 0 1 N N N 16.789 -19.853 -8.061  2.657  -3.875 -0.024 H8  2IU 45 
2IU H9  H9  H 0 1 N N N 17.047 -21.345 -9.029  2.861  -3.750 -1.799 H9  2IU 46 
2IU H10 H10 H 0 1 N N N 19.100 -21.490 -8.001  2.256  -1.486 -1.834 H10 2IU 47 
2IU H11 H11 H 0 1 N N N 18.858 -20.954 -10.985 -0.224 -2.355 -2.180 H11 2IU 48 
2IU H12 H12 H 0 1 N N N 18.953 -18.947 -12.458 -1.902 -3.783 -0.914 H12 2IU 49 
2IU H13 H13 H 0 1 N N N 20.577 -19.451 -11.879 -1.218 -3.148 0.601  H13 2IU 50 
2IU H14 H14 H 0 1 N N N 19.941 -17.960 -8.214  4.119  -0.310 -1.339 H14 2IU 51 
2IU H15 H15 H 0 1 N N N 18.679 -19.478 -3.880  3.584  -1.501 3.295  H15 2IU 52 
2IU H16 H16 H 0 1 N N N 17.076 -11.819 -13.215 -8.310 1.731  -1.918 H16 2IU 53 
2IU H17 H17 H 0 1 N N N 21.089 -14.872 -11.368 -4.744 -2.584 -1.636 H17 2IU 54 
2IU H18 H18 H 0 1 N N N 15.592 -17.917 -11.987 -4.128 1.865  1.842  H18 2IU 55 
2IU H19 H19 H 0 1 N N N 18.079 -14.649 -15.355 -7.520 4.763  -1.531 H19 2IU 56 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
2IU O11 P2  DOUB N N 1  
2IU O9  P2  SING N N 2  
2IU P2  O10 SING N N 3  
2IU P2  O8  SING N N 4  
2IU O6  P1  DOUB N N 5  
2IU O3  P   DOUB N N 6  
2IU O8  P1  SING N N 7  
2IU P1  O7  SING N N 8  
2IU P1  O5  SING N N 9  
2IU C4  O2  SING N N 10 
2IU C4  C3  SING N N 11 
2IU P   O5  SING N N 12 
2IU P   O2  SING N N 13 
2IU P   O4  SING N N 14 
2IU O   C   SING N N 15 
2IU C3  C   SING N N 16 
2IU C3  O1  SING N N 17 
2IU C   C1  SING N N 18 
2IU O1  C2  SING N N 19 
2IU C1  C2  SING N N 20 
2IU C13 C14 DOUB Y N 21 
2IU C13 C12 SING Y N 22 
2IU C2  N   SING N N 23 
2IU C14 C15 SING Y N 24 
2IU O14 C12 SING Y N 25 
2IU O14 C9  SING Y N 26 
2IU C12 C11 DOUB Y N 27 
2IU C5  N   SING N N 28 
2IU C5  C6  DOUB N N 29 
2IU N   C8  SING N N 30 
2IU C15 C16 DOUB Y N 31 
2IU C9  C6  SING N N 32 
2IU C9  C10 DOUB Y N 33 
2IU C11 C16 SING Y N 34 
2IU C11 C10 SING Y N 35 
2IU C6  C7  SING N N 36 
2IU C8  O13 DOUB N N 37 
2IU C8  N1  SING N N 38 
2IU C7  N1  SING N N 39 
2IU C7  O12 DOUB N N 40 
2IU C10 H1  SING N N 41 
2IU C13 H2  SING N N 42 
2IU C15 H3  SING N N 43 
2IU C14 H4  SING N N 44 
2IU C16 H5  SING N N 45 
2IU C   H6  SING N N 46 
2IU O   H7  SING N N 47 
2IU C1  H8  SING N N 48 
2IU C1  H9  SING N N 49 
2IU C2  H10 SING N N 50 
2IU C3  H11 SING N N 51 
2IU C4  H12 SING N N 52 
2IU C4  H13 SING N N 53 
2IU C5  H14 SING N N 54 
2IU N1  H15 SING N N 55 
2IU O10 H16 SING N N 56 
2IU O4  H17 SING N N 57 
2IU O7  H18 SING N N 58 
2IU O9  H19 SING N N 59 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
2IU InChI            InChI                1.03  "InChI=1S/C17H19N2O15P3/c20-11-6-15(32-14(11)8-30-36(26,27)34-37(28,29)33-35(23,24)25)19-7-10(16(21)18-17(19)22)13-5-9-3-1-2-4-12(9)31-13/h1-5,7,11,14-15,20H,6,8H2,(H,26,27)(H,28,29)(H,18,21,22)(H2,23,24,25)/t11-,14+,15+/m0/s1" 
2IU InChIKey         InChI                1.03  VGLLIBLXYZHTBF-NILFDRSVSA-N                                                                                                                                                                                                         
2IU SMILES_CANONICAL CACTVS               3.385 "O[C@H]1C[C@@H](O[C@@H]1CO[P](O)(=O)O[P](O)(=O)O[P](O)(O)=O)N2C=C(C(=O)NC2=O)c3oc4ccccc4c3"                                                                                                                                         
2IU SMILES           CACTVS               3.385 "O[CH]1C[CH](O[CH]1CO[P](O)(=O)O[P](O)(=O)O[P](O)(O)=O)N2C=C(C(=O)NC2=O)c3oc4ccccc4c3"                                                                                                                                              
2IU SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1ccc2c(c1)cc(o2)C3=CN(C(=O)NC3=O)[C@H]4C[C@@H]([C@H](O4)COP(=O)(O)OP(=O)(O)OP(=O)(O)O)O"                                                                                                                                          
2IU SMILES           "OpenEye OEToolkits" 2.0.7 "c1ccc2c(c1)cc(o2)C3=CN(C(=O)NC3=O)C4CC(C(O4)COP(=O)(O)OP(=O)(O)OP(=O)(O)O)O"                                                                                                                                                       
# 
_pdbx_chem_comp_identifier.comp_id           2IU 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "[[(2~{R},3~{S},5~{R})-5-[5-(1-benzofuran-2-yl)-2,4-bis(oxidanylidene)pyrimidin-1-yl]-3-oxidanyl-oxolan-2-yl]methoxy-oxidanyl-phosphoryl] phosphono hydrogen phosphate" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
2IU "Create component" 2021-06-21 PDBE 
2IU "Modify synonyms"  2022-06-22 PDBE 
2IU "Initial release"  2022-06-29 RCSB 
# 
_pdbx_chem_comp_synonyms.ordinal      1 
_pdbx_chem_comp_synonyms.comp_id      2IU 
_pdbx_chem_comp_synonyms.name         BFdUTP 
_pdbx_chem_comp_synonyms.provenance   AUTHOR 
_pdbx_chem_comp_synonyms.type         ? 
# 
