data_8BU
# 
_chem_comp.id                                    8BU 
_chem_comp.name                                  "[(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-[(S)-fluoranyl-[oxidanyl(phosphonooxy)phosphoryl]methyl]phosphinic acid" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C11 H17 F N5 O12 P3" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2017-06-06 
_chem_comp.pdbx_modified_date                    2018-02-02 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        523.199 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     8BU 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        5XP5 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
8BU PG    P1  P 0 1 N N N 14.010 -5.054 11.356 -7.129 -1.308 0.646  PG    8BU 1  
8BU O1G   O1  O 0 1 N N N 13.408 -6.019 10.362 -7.960 -0.176 0.180  O1G   8BU 2  
8BU O2G   O2  O 0 1 N N N 14.119 -3.638 10.844 -7.615 -1.763 2.112  O2G   8BU 3  
8BU O3G   O3  O 0 1 N N N 13.392 -5.149 12.732 -7.280 -2.542 -0.377 O3G   8BU 4  
8BU PB    P2  P 0 1 N N N 16.513 -4.831 12.614 -4.649 0.057  -0.234 PB    8BU 5  
8BU O1B   O4  O 0 1 N N N 15.698 -3.988 13.569 -5.216 1.421  -0.330 O1B   8BU 6  
8BU O2B   O5  O 0 1 N N N 17.598 -4.117 11.841 -4.574 -0.597 -1.704 O2B   8BU 7  
8BU O3B   O6  O 0 1 N N N 15.523 -5.550 11.578 -5.586 -0.850 0.710  O3B   8BU 8  
8BU PA    P3  P 0 1 N N N 18.724 -5.945 13.822 -1.911 1.171  -0.591 PA    8BU 9  
8BU O1A   O7  O 0 1 N N N 18.930 -6.828 15.036 -2.478 2.534  -0.687 O1A   8BU 10 
8BU O2A   O8  O 0 1 N N N 19.012 -4.463 13.941 -1.837 0.516  -2.061 O2A   8BU 11 
8BU N9    N1  N 0 1 Y N N 23.063 -3.450 11.829 4.608  -0.394 -0.043 N9    8BU 12 
8BU C8    C1  C 0 1 Y N N 21.944 -2.871 11.370 4.265  -1.150 -1.125 C8    8BU 13 
8BU N7    N2  N 0 1 Y N N 22.238 -1.699 10.769 5.198  -2.024 -1.369 N7    8BU 14 
8BU C5    C2  C 0 1 Y N N 23.551 -1.474 10.814 6.196  -1.885 -0.464 C5    8BU 15 
8BU C6    C3  C 0 1 Y N N 24.438 -0.390 10.337 7.423  -2.531 -0.238 C6    8BU 16 
8BU N6    N3  N 0 1 N N N 23.953 0.679  9.692  7.837  -3.569 -1.054 N6    8BU 17 
8BU N1    N4  N 0 1 Y N N 25.733 -0.551 10.591 8.177  -2.121 0.777  N1    8BU 18 
8BU C2    C4  C 0 1 Y N N 26.166 -1.637 11.239 7.790  -1.131 1.560  C2    8BU 19 
8BU N3    N5  N 0 1 Y N N 25.430 -2.654 11.699 6.649  -0.497 1.387  N3    8BU 20 
8BU C4    C5  C 0 1 Y N N 24.104 -2.650 11.527 5.829  -0.837 0.398  C4    8BU 21 
8BU C01   C6  C 0 1 N N S 17.166 -6.060 13.438 -2.973 0.144  0.477  C01   8BU 22 
8BU "O5'" O9  O 0 1 N N N 19.542 -6.530 12.562 -0.431 1.248  0.037  "O5'" 8BU 23 
8BU "C5'" C7  C 0 1 N N N 20.625 -7.427 12.871 0.606  2.063  -0.512 "C5'" 8BU 24 
8BU "C4'" C8  C 0 1 N N R 21.935 -6.671 13.090 1.878  1.902  0.324  "C4'" 8BU 25 
8BU "C3'" C9  C 0 1 N N S 21.932 -5.819 14.399 2.975  2.867  -0.176 "C3'" 8BU 26 
8BU "O3'" O10 O 0 1 N N N 22.583 -6.505 15.480 3.021  4.039  0.641  "O3'" 8BU 27 
8BU "C2'" C10 C 0 1 N N R 22.684 -4.533 14.019 4.283  2.056  -0.032 "C2'" 8BU 28 
8BU "O2'" O11 O 0 1 N N N 23.789 -4.261 14.884 5.175  2.702  0.878  "O2'" 8BU 29 
8BU "C1'" C11 C 0 1 N N R 23.163 -4.754 12.553 3.820  0.696  0.537  "C1'" 8BU 30 
8BU "O4'" O12 O 0 1 N N N 22.361 -5.802 11.965 2.436  0.582  0.141  O4*   8BU 31 
8BU F01   F1  F 0 1 N N N 17.048 -6.876 12.905 -2.437 -1.145 0.567  F01   8BU 32 
8BU H1    H1  H 0 1 N N N 13.780 -3.594 9.958  -8.536 -2.052 2.148  H1    8BU 33 
8BU H2    H2  H 0 1 N N N 12.716 -5.816 12.731 -6.761 -3.320 -0.133 H2    8BU 34 
8BU H4    H4  H 0 1 N N N 17.607 -3.198 12.082 -4.212 -1.493 -1.717 H4    8BU 35 
8BU H6    H6  H 0 1 N N N 19.305 -4.267 14.823 -1.474 -0.380 -2.074 H6    8BU 36 
8BU H7    H7  H 0 1 N N N 20.951 -3.283 11.467 3.354  -1.040 -1.694 H7    8BU 37 
8BU H8    H8  H 0 1 N N N 24.704 1.294  9.453  7.278  -3.859 -1.792 H8    8BU 38 
8BU H9    H9  H 0 1 N N N 23.487 0.382  8.858  8.686  -4.007 -0.888 H9    8BU 39 
8BU H10   H10 H 0 1 N N N 27.230 -1.700 11.410 8.433  -0.831 2.374  H10   8BU 40 
8BU H11   H11 H 0 1 N N N 16.638 -6.061 14.403 -3.023 0.587  1.472  H11   8BU 41 
8BU H12   H12 H 0 1 N N N 20.377 -7.984 13.786 0.805  1.755  -1.539 H12   8BU 42 
8BU H13   H13 H 0 1 N N N 20.754 -8.132 12.036 0.293  3.107  -0.500 H13   8BU 43 
8BU H14   H14 H 0 1 N N N 22.717 -7.433 13.223 1.664  2.082  1.377  H14   8BU 44 
8BU H15   H15 H 0 1 N N N 20.894 -5.570 14.663 2.803  3.136  -1.218 H15   8BU 45 
8BU H16   H16 H 0 1 N N N 22.564 -5.961 16.258 3.693  4.680  0.372  H16   8BU 46 
8BU H17   H17 H 0 1 N N N 21.975 -3.692 14.031 4.759  1.924  -1.004 H17   8BU 47 
8BU H18   H18 H 0 1 N N N 24.218 -3.460 14.608 5.450  3.586  0.598  H18   8BU 48 
8BU H19   H19 H 0 1 N N N 24.217 -5.067 12.581 3.907  0.690  1.623  H19   8BU 49 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
8BU PG    O1G   DOUB N N 1  
8BU PG    O2G   SING N N 2  
8BU PG    O3G   SING N N 3  
8BU PG    O3B   SING N N 4  
8BU PB    O1B   DOUB N N 5  
8BU PB    O2B   SING N N 6  
8BU PB    O3B   SING N N 7  
8BU PB    C01   SING N N 8  
8BU PA    O1A   DOUB N N 9  
8BU PA    O2A   SING N N 10 
8BU PA    C01   SING N N 11 
8BU PA    "O5'" SING N N 12 
8BU N9    C8    SING Y N 13 
8BU N9    C4    SING Y N 14 
8BU N9    "C1'" SING N N 15 
8BU C8    N7    DOUB Y N 16 
8BU N7    C5    SING Y N 17 
8BU C5    C6    DOUB Y N 18 
8BU C5    C4    SING Y N 19 
8BU C6    N6    SING N N 20 
8BU C6    N1    SING Y N 21 
8BU N1    C2    DOUB Y N 22 
8BU C2    N3    SING Y N 23 
8BU N3    C4    DOUB Y N 24 
8BU C01   F01   SING N N 25 
8BU "O5'" "C5'" SING N N 26 
8BU "C5'" "C4'" SING N N 27 
8BU "C4'" "C3'" SING N N 28 
8BU "C4'" "O4'" SING N N 29 
8BU "C3'" "O3'" SING N N 30 
8BU "C3'" "C2'" SING N N 31 
8BU "C2'" "O2'" SING N N 32 
8BU "C2'" "C1'" SING N N 33 
8BU "C1'" "O4'" SING N N 34 
8BU O2G   H1    SING N N 35 
8BU O3G   H2    SING N N 36 
8BU O2B   H4    SING N N 37 
8BU O2A   H6    SING N N 38 
8BU C8    H7    SING N N 39 
8BU N6    H8    SING N N 40 
8BU N6    H9    SING N N 41 
8BU C2    H10   SING N N 42 
8BU C01   H11   SING N N 43 
8BU "C5'" H12   SING N N 44 
8BU "C5'" H13   SING N N 45 
8BU "C4'" H14   SING N N 46 
8BU "C3'" H15   SING N N 47 
8BU "O3'" H16   SING N N 48 
8BU "C2'" H17   SING N N 49 
8BU "O2'" H18   SING N N 50 
8BU "C1'" H19   SING N N 51 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
8BU InChI            InChI                1.03  
"InChI=1S/C11H17FN5O12P3/c12-11(31(22,23)29-32(24,25)26)30(20,21)27-1-4-6(18)7(19)10(28-4)17-3-16-5-8(13)14-2-15-9(5)17/h2-4,6-7,10-11,18-19H,1H2,(H,20,21)(H,22,23)(H2,13,14,15)(H2,24,25,26)/t4-,6-,7-,10-,11+/m1/s1" 
8BU InChIKey         InChI                1.03  XKSDFFGXFUDVBD-MYGYUQIRSA-N 
8BU SMILES_CANONICAL CACTVS               3.385 "Nc1ncnc2n(cnc12)[C@@H]3O[C@H](CO[P](O)(=O)[C@H](F)[P](O)(=O)O[P](O)(O)=O)[C@@H](O)[C@H]3O" 
8BU SMILES           CACTVS               3.385 "Nc1ncnc2n(cnc12)[CH]3O[CH](CO[P](O)(=O)[CH](F)[P](O)(=O)O[P](O)(O)=O)[CH](O)[CH]3O" 
8BU SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "c1nc(c2c(n1)n(cn2)[C@H]3[C@@H]([C@@H]([C@H](O3)COP(=O)([C@H](F)P(=O)(O)OP(=O)(O)O)O)O)O)N" 
8BU SMILES           "OpenEye OEToolkits" 2.0.6 "c1nc(c2c(n1)n(cn2)C3C(C(C(O3)COP(=O)(C(F)P(=O)(O)OP(=O)(O)O)O)O)O)N" 
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
8BU "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 "[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-[(~{S})-fluoranyl-[oxidanyl(phosphonooxy)phosphoryl]methyl]phosphinic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
8BU "Create component" 2017-06-07 PDBJ 
8BU "Initial release"  2018-02-07 RCSB 
# 
