data_DAU
# 
_chem_comp.id                                    DAU 
_chem_comp.name                                  "2'DEOXY-THYMIDINE-5'-DIPHOSPHO-ALPHA-D-GLUCOSE" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C16 H26 N2 O16 P2" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2000-11-16 
_chem_comp.pdbx_modified_date                    2012-05-16 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        564.329 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     DAU 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        1G1L 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
DAU O6     O6     O 0 1 N N N 47.805 16.783 19.152 -3.106 2.914  2.683  O6     DAU 1  
DAU C6     C6     C 0 1 N N N 48.107 16.991 20.534 -3.867 3.428  1.588  C6     DAU 2  
DAU C5     C5     C 0 1 N N R 47.813 18.385 21.062 -4.089 2.321  0.556  C5     DAU 3  
DAU O5     O5     O 0 1 N N N 46.425 18.650 20.987 -4.898 1.291  1.128  O5     DAU 4  
DAU C4     C4     C 0 1 N N S 48.326 18.480 22.512 -4.796 2.901  -0.672 C4     DAU 5  
DAU O4     O4     O 0 1 N N N 49.769 18.450 22.548 -3.963 3.890  -1.280 O4     DAU 6  
DAU C3     C3     C 0 1 N N S 47.837 19.754 23.161 -5.068 1.775  -1.674 C3     DAU 7  
DAU O3     O3     O 0 1 N N N 48.179 19.731 24.529 -5.793 2.294  -2.791 O3     DAU 8  
DAU C2     C2     C 0 1 N N R 46.362 19.912 23.036 -5.896 0.684  -0.988 C2     DAU 9  
DAU O2     O2     O 0 1 N N N 45.956 21.146 23.573 -6.094 -0.405 -1.892 O2     DAU 10 
DAU C1     C1     C 0 1 N N R 45.928 19.796 21.581 -5.146 0.190  0.252  C1     DAU 11 
DAU O1     O1     O 0 1 N N N 46.500 20.867 20.851 -3.904 -0.394 -0.144 O1     DAU 12 
DAU P2     P2     P 0 1 N N N 45.813 21.446 19.521 -3.194 -1.584 0.675  P2     DAU 13 
DAU O3P    O3P    O 0 1 N N N 44.286 21.602 19.953 -3.015 -1.174 2.086  O3P    DAU 14 
DAU O4P    O4P    O 0 1 N N N 46.622 22.673 18.957 -4.115 -2.903 0.613  O4P    DAU 15 
DAU OPP    OPP    O 0 1 N N N 45.566 20.364 18.427 -1.757 -1.902 0.023  OPP    DAU 16 
DAU P      P      P 0 1 N N N 44.235 20.603 17.491 -0.461 -2.721 0.515  P      DAU 17 
DAU O1P    O1P    O 0 1 N N N 43.798 22.126 17.528 -0.227 -2.456 1.952  O1P    DAU 18 
DAU O2P    O2P    O 0 1 N N N 44.786 19.749 16.252 -0.705 -4.297 0.293  O2P    DAU 19 
DAU "O5'"  "O5'"  O 0 1 N N N 42.924 19.924 18.176 0.825  -2.253 -0.333 "O5'"  DAU 20 
DAU "C5'"  "C5'"  C 0 1 N N N 42.973 18.560 18.544 2.148  -2.719 -0.062 "C5'"  DAU 21 
DAU "C4'"  "C4'"  C 0 1 N N R 41.748 17.844 18.033 3.126  -2.079 -1.050 "C4'"  DAU 22 
DAU "O4'"  "O4'"  O 0 1 N N N 40.585 18.231 18.751 3.216  -0.655 -0.826 "O4'"  DAU 23 
DAU "C3'"  "C3'"  C 0 1 N N S 41.472 18.145 16.576 4.570  -2.578 -0.788 "C3'"  DAU 24 
DAU "O3'"  "O3'"  O 0 1 N N N 40.918 16.932 16.011 4.822  -3.800 -1.484 "O3'"  DAU 25 
DAU "C2'"  "C2'"  C 0 1 N N N 40.530 19.310 16.744 5.422  -1.424 -1.371 "C2'"  DAU 26 
DAU "C1'"  "C1'"  C 0 1 N N R 39.634 18.880 17.893 4.462  -0.219 -1.393 "C1'"  DAU 27 
DAU N11    N11    N 0 1 N N N 38.990 19.885 18.768 5.018  0.875  -0.593 N11    DAU 28 
DAU C61    C61    C 0 1 N N N 39.700 20.926 19.249 5.361  2.052  -1.200 C61    DAU 29 
DAU C51    C51    C 0 1 N N N 39.096 21.833 20.102 5.873  3.061  -0.462 C51    DAU 30 
DAU C5A    C5A    C 0 1 N N N 39.892 23.008 20.676 6.256  4.365  -1.113 C5A    DAU 31 
DAU C21    C21    C 0 1 N N N 37.690 19.754 19.133 5.181  0.715  0.733  C21    DAU 32 
DAU O21    O21    O 0 1 N N N 36.971 18.766 18.681 4.865  -0.338 1.253  O21    DAU 33 
DAU N31    N31    N 0 1 N N N 37.090 20.611 19.985 5.688  1.704  1.492  N31    DAU 34 
DAU C41    C41    C 0 1 N N N 37.783 21.635 20.467 6.044  2.877  0.931  C41    DAU 35 
DAU O41    O41    O 0 1 N N N 37.219 22.468 21.295 6.503  3.772  1.617  O41    DAU 36 
DAU HO6    HO6    H 0 1 N N N 48.020 15.889 18.912 -2.928 3.563  3.377  HO6    DAU 37 
DAU HC61   HC61   H 0 0 N N N 47.516 16.274 21.122 -4.831 3.785  1.951  HC61   DAU 38 
DAU HC62   HC62   H 0 0 N N N 49.179 16.791 20.681 -3.326 4.253  1.125  HC62   DAU 39 
DAU HC5    HC5    H 0 1 N N N 48.367 19.114 20.452 -3.127 1.903  0.258  HC5    DAU 40 
DAU HC4    HC4    H 0 1 N N N 47.927 17.624 23.075 -5.739 3.355  -0.368 HC4    DAU 41 
DAU HO4    HO4    H 0 1 N N N 50.065 18.510 23.449 -4.349 4.301  -2.065 HO4    DAU 42 
DAU HC3    HC3    H 0 1 N N N 48.327 20.607 22.668 -4.122 1.355  -2.017 HC3    DAU 43 
DAU HO3    HO3    H 0 1 N N N 47.875 20.529 24.945 -6.000 1.634  -3.467 HO3    DAU 44 
DAU HC2    HC2    H 0 1 N N N 45.881 19.096 23.596 -6.862 1.092  -0.692 HC2    DAU 45 
DAU HO2    HO2    H 0 1 N N N 45.014 21.235 23.487 -6.612 -1.133 -1.522 HO2    DAU 46 
DAU HC1    HC1    H 0 1 N N N 44.830 19.830 21.526 -5.750 -0.556 0.768  HC1    DAU 47 
DAU H4PO   H4PO   H 0 0 N N N 46.061 23.439 18.934 -4.275 -3.229 -0.284 H4PO   DAU 48 
DAU H2PO   H2PO   H 0 0 N N N 44.825 20.300 15.479 -0.866 -4.544 -0.628 H2PO   DAU 49 
DAU HC51   HC51   H 0 0 N N N 43.872 18.098 18.111 2.428  -2.446 0.955  HC51   DAU 50 
DAU HC52   HC52   H 0 0 N N N 43.011 18.480 19.640 2.180  -3.803 -0.170 HC52   DAU 51 
DAU "H4'C" "H4'C" H 0 0 N N N 41.907 16.761 18.140 2.826  -2.288 -2.076 "H4'C" DAU 52 
DAU "H3'C" "H3'C" H 0 0 N N N 42.392 18.455 16.059 4.753  -2.695 0.280  "H3'C" DAU 53 
DAU "H3'O" "H3'O" H 0 0 N N N 40.726 17.070 15.091 5.713  -4.152 -1.351 "H3'O" DAU 54 
DAU HC21   HC21   H 0 0 N N N 41.081 20.228 16.998 6.278  -1.219 -0.728 HC21   DAU 55 
DAU HC22   HC22   H 0 0 N N N 39.943 19.476 15.829 5.753  -1.667 -2.381 HC22   DAU 56 
DAU "H1'C" "H1'C" H 0 0 N N N 38.885 18.162 17.527 4.307  0.112  -2.420 "H1'C" DAU 57 
DAU H61C   H61C   H 0 0 N N N 40.736 21.051 18.970 5.224  2.174  -2.264 H61C   DAU 58 
DAU H5A1   H5A1   H 0 0 N N N 39.240 23.610 21.326 5.401  5.040  -1.106 H5A1   DAU 59 
DAU H5A2   H5A2   H 0 0 N N N 40.741 22.625 21.261 7.081  4.817  -0.562 H5A2   DAU 60 
DAU H5A3   H5A3   H 0 0 N N N 40.267 23.634 19.853 6.565  4.180  -2.142 H5A3   DAU 61 
DAU H31N   H31N   H 0 0 N N N 36.135 20.476 20.250 5.799  1.571  2.447  H31N   DAU 62 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
DAU O6    C6     SING N N 1  
DAU O6    HO6    SING N N 2  
DAU C6    C5     SING N N 3  
DAU C6    HC61   SING N N 4  
DAU C6    HC62   SING N N 5  
DAU C5    O5     SING N N 6  
DAU C5    C4     SING N N 7  
DAU C5    HC5    SING N N 8  
DAU O5    C1     SING N N 9  
DAU C4    O4     SING N N 10 
DAU C4    C3     SING N N 11 
DAU C4    HC4    SING N N 12 
DAU O4    HO4    SING N N 13 
DAU C3    O3     SING N N 14 
DAU C3    C2     SING N N 15 
DAU C3    HC3    SING N N 16 
DAU O3    HO3    SING N N 17 
DAU C2    O2     SING N N 18 
DAU C2    C1     SING N N 19 
DAU C2    HC2    SING N N 20 
DAU O2    HO2    SING N N 21 
DAU C1    O1     SING N N 22 
DAU C1    HC1    SING N N 23 
DAU O1    P2     SING N N 24 
DAU P2    O3P    DOUB N N 25 
DAU P2    O4P    SING N N 26 
DAU P2    OPP    SING N N 27 
DAU O4P   H4PO   SING N N 28 
DAU OPP   P      SING N N 29 
DAU P     O1P    DOUB N N 30 
DAU P     O2P    SING N N 31 
DAU P     "O5'"  SING N N 32 
DAU O2P   H2PO   SING N N 33 
DAU "O5'" "C5'"  SING N N 34 
DAU "C5'" "C4'"  SING N N 35 
DAU "C5'" HC51   SING N N 36 
DAU "C5'" HC52   SING N N 37 
DAU "C4'" "O4'"  SING N N 38 
DAU "C4'" "C3'"  SING N N 39 
DAU "C4'" "H4'C" SING N N 40 
DAU "O4'" "C1'"  SING N N 41 
DAU "C3'" "O3'"  SING N N 42 
DAU "C3'" "C2'"  SING N N 43 
DAU "C3'" "H3'C" SING N N 44 
DAU "O3'" "H3'O" SING N N 45 
DAU "C2'" "C1'"  SING N N 46 
DAU "C2'" HC21   SING N N 47 
DAU "C2'" HC22   SING N N 48 
DAU "C1'" N11    SING N N 49 
DAU "C1'" "H1'C" SING N N 50 
DAU N11   C61    SING N N 51 
DAU N11   C21    SING N N 52 
DAU C61   C51    DOUB N N 53 
DAU C61   H61C   SING N N 54 
DAU C51   C5A    SING N N 55 
DAU C51   C41    SING N N 56 
DAU C5A   H5A1   SING N N 57 
DAU C5A   H5A2   SING N N 58 
DAU C5A   H5A3   SING N N 59 
DAU C21   O21    DOUB N N 60 
DAU C21   N31    SING N N 61 
DAU N31   C41    SING N N 62 
DAU N31   H31N   SING N N 63 
DAU C41   O41    DOUB N N 64 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
DAU SMILES           ACDLabs              12.01 "O=C1C(=CN(C(=O)N1)C2OC(C(O)C2)COP(=O)(OP(=O)(OC3OC(C(O)C(O)C3O)CO)O)O)C" 
DAU InChI            InChI                1.03  
"InChI=1S/C16H26N2O16P2/c1-6-3-18(16(25)17-14(6)24)10-2-7(20)9(31-10)5-30-35(26,27)34-36(28,29)33-15-13(23)12(22)11(21)8(4-19)32-15/h3,7-13,15,19-23H,2,4-5H2,1H3,(H,26,27)(H,28,29)(H,17,24,25)/t7-,8+,9+,10+,11+,12-,13+,15+/m0/s1" 
DAU InChIKey         InChI                1.03  YSYKRGRSMLTJNL-URARBOGNSA-N 
DAU SMILES_CANONICAL CACTVS               3.370 "CC1=CN([C@H]2C[C@H](O)[C@@H](CO[P](O)(=O)O[P](O)(=O)O[C@H]3O[C@H](CO)[C@@H](O)[C@H](O)[C@H]3O)O2)C(=O)NC1=O" 
DAU SMILES           CACTVS               3.370 "CC1=CN([CH]2C[CH](O)[CH](CO[P](O)(=O)O[P](O)(=O)O[CH]3O[CH](CO)[CH](O)[CH](O)[CH]3O)O2)C(=O)NC1=O" 
DAU SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "CC1=CN(C(=O)NC1=O)[C@H]2C[C@@H]([C@H](O2)CO[P@](=O)(O)O[P@](=O)(O)O[C@@H]3[C@@H]([C@H]([C@@H]([C@H](O3)CO)O)O)O)O" 
DAU SMILES           "OpenEye OEToolkits" 1.7.6 "CC1=CN(C(=O)NC1=O)C2CC(C(O2)COP(=O)(O)OP(=O)(O)OC3C(C(C(C(O3)CO)O)O)O)O" 
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
DAU "SYSTEMATIC NAME" ACDLabs              12.01 
"[(2R,3S,5R)-3-hydroxy-5-(5-methyl-2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)tetrahydrofuran-2-yl]methyl (2R,3R,4S,5S,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)tetrahydro-2H-pyran-2-yl dihydrogen diphosphate (non-preferred name)" 
DAU "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "[(2R,3R,4S,5S,6R)-6-(hydroxymethyl)-3,4,5-tris(oxidanyl)oxan-2-yl] [[(2R,3S,5R)-5-[5-methyl-2,4-bis(oxidanylidene)pyrimidin-1-yl]-3-oxidanyl-oxolan-2-yl]methoxy-oxidanyl-phosphoryl] hydrogen phosphate" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
DAU "Create component"  2000-11-16 RCSB 
DAU "Modify descriptor" 2011-06-04 RCSB 
DAU "Modify atom id"    2012-05-16 RCSB 
# 
