data_FDU
#

_chem_comp.id                                   FDU
_chem_comp.name                                 "1-(2-deoxy-2-fluoro-beta-D-arabinofuranosyl)-5-ethynylpyrimidine-2,4(1H,3H)-dione"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C11 H11 F N2 O5"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        "(2'S)-2'-DEOXY-2'-FLUORO-5-ETHYNYLURIDINE"
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2014-02-12
_chem_comp.pdbx_modified_date                   2021-03-01
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       270.214
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    FDU
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       4OQM
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
FDU  O01  O01  O  0  1  N  N  N  -51.364  23.568   1.328  -3.955  -2.466   0.684  O01  FDU   1  
FDU  C03  C03  C  0  1  N  N  N  -50.016  23.858   1.019  -3.774  -1.302  -0.125  C03  FDU   2  
FDU  C06  C06  C  0  1  N  N  R  -49.976  25.227   0.346  -2.878  -0.303   0.611  C06  FDU   3  
FDU  O08  O08  O  0  1  N  N  N  -48.741  25.862   0.721  -1.541  -0.829   0.753  O08  FDU   4  
FDU  C09  C09  C  0  1  N  N  R  -49.972  25.156  -1.181  -2.674   0.976  -0.239  C09  FDU   5  
FDU  O11  O11  O  0  1  N  N  N  -50.458  26.354  -1.749  -3.732   1.911  -0.016  O11  FDU   6  
FDU  C13  C13  C  0  1  N  N  S  -48.507  24.937  -1.502  -1.332   1.519   0.308  C13  FDU   7  
FDU  F15  F15  F  0  1  N  N  N  -48.214  23.613  -1.374  -0.537   2.004  -0.736  F15  FDU   8  
FDU  C16  C16  C  0  1  N  N  R  -47.836  25.775  -0.406  -0.668   0.293   0.965  C16  FDU   9  
FDU  N18  N18  N  0  1  N  N  N  -46.531  25.362   0.105   0.633   0.038   0.343  N18  FDU  10  
FDU  C19  C19  C  0  1  N  N  N  -45.410  25.989  -0.422   0.685  -0.318  -0.950  C19  FDU  11  
FDU  O20  O20  O  0  1  N  N  N  -45.437  26.831  -1.320  -0.352  -0.420  -1.577  O20  FDU  12  
FDU  N21  N21  N  0  1  N  N  N  -44.213  25.594   0.132   1.850  -0.565  -1.573  N21  FDU  13  
FDU  C23  C23  C  0  1  N  N  N  -44.036  24.671   1.134   3.017  -0.460  -0.903  C23  FDU  14  
FDU  O24  O24  O  0  1  N  N  N  -42.925  24.365   1.573   4.076  -0.682  -1.461  O24  FDU  15  
FDU  C25  C25  C  0  1  N  N  N  -45.266  24.051   1.655   2.983  -0.072   0.515  C25  FDU  16  
FDU  C26  C26  C  0  1  N  N  N  -46.434  24.427   1.120   1.768   0.172   1.090  C26  FDU  17  
FDU  C28  C28  C  0  1  N  N  N  -45.157  23.083   2.694   4.192   0.053   1.271  C28  FDU  18  
FDU  C29  C29  C  0  1  N  N  N  -45.027  22.273   3.566   5.183   0.156   1.892  C29  FDU  19  
FDU  H1   H1   H  0  1  N  N  N  -51.417  22.718   1.749  -4.514  -3.143   0.280  H1   FDU  20  
FDU  H2   H2   H  0  1  N  N  N  -49.616  23.094   0.337  -3.305  -1.584  -1.068  H2   FDU  21  
FDU  H3   H3   H  0  1  N  N  N  -49.416  23.877   1.941  -4.742  -0.843  -0.323  H3   FDU  22  
FDU  H4   H4   H  0  1  N  N  N  -50.837  25.824   0.681  -3.299  -0.057   1.585  H4   FDU  23  
FDU  H5   H5   H  0  1  N  N  N  -50.561  24.288  -1.513  -2.592   0.731  -1.298  H5   FDU  24  
FDU  H6   H6   H  0  1  N  N  N  -51.376  26.460  -1.529  -3.649   2.728  -0.526  H6   FDU  25  
FDU  H7   H7   H  0  1  N  N  N  -48.263  25.339  -2.496  -1.509   2.301   1.046  H7   FDU  26  
FDU  H8   H8   H  0  1  N  N  N  -47.721  26.789  -0.816  -0.540   0.469   2.033  H8   FDU  27  
FDU  H9   H9   H  0  1  N  N  N  -43.387  26.023  -0.233   1.853  -0.820  -2.509  H9   FDU  28  
FDU  H10  H10  H  0  1  N  N  N  -47.342  23.980   1.498   1.706   0.463   2.128  H10  FDU  29  
FDU  H11  H11  H  0  1  N  N  N  -44.912  21.556   4.338   6.070   0.248   2.447  H11  FDU  30  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
FDU  O11  C09  SING  N  N   1  
FDU  C13  F15  SING  N  N   2  
FDU  C13  C09  SING  N  N   3  
FDU  C13  C16  SING  N  N   4  
FDU  O20  C19  DOUB  N  N   5  
FDU  C09  C06  SING  N  N   6  
FDU  C19  N18  SING  N  N   7  
FDU  C19  N21  SING  N  N   8  
FDU  C16  N18  SING  N  N   9  
FDU  C16  O08  SING  N  N  10  
FDU  N18  C26  SING  N  N  11  
FDU  N21  C23  SING  N  N  12  
FDU  C06  O08  SING  N  N  13  
FDU  C06  C03  SING  N  N  14  
FDU  C03  O01  SING  N  N  15  
FDU  C26  C25  DOUB  N  N  16  
FDU  C23  O24  DOUB  N  N  17  
FDU  C23  C25  SING  N  N  18  
FDU  C25  C28  SING  N  N  19  
FDU  C28  C29  TRIP  N  N  20  
FDU  O01  H1   SING  N  N  21  
FDU  C03  H2   SING  N  N  22  
FDU  C03  H3   SING  N  N  23  
FDU  C06  H4   SING  N  N  24  
FDU  C09  H5   SING  N  N  25  
FDU  O11  H6   SING  N  N  26  
FDU  C13  H7   SING  N  N  27  
FDU  C16  H8   SING  N  N  28  
FDU  N21  H9   SING  N  N  29  
FDU  C26  H10  SING  N  N  30  
FDU  C29  H11  SING  N  N  31  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
FDU  SMILES            ACDLabs               12.01  "O=C1NC(=O)N(C=C1C#C)C2OC(C(O)C2F)CO"  
FDU  InChI             InChI                 1.03   "InChI=1S/C11H11FN2O5/c1-2-5-3-14(11(18)13-9(5)17)10-7(12)8(16)6(4-15)19-10/h1,3,6-8,10,15-16H,4H2,(H,13,17,18)/t6-,7+,8-,10-/m1/s1"  
FDU  InChIKey          InChI                 1.03   YEEGMPUOCRQFRV-IBCQBUCCSA-N  
FDU  SMILES_CANONICAL  CACTVS                3.370  "OC[C@H]1O[C@H]([C@@H](F)[C@@H]1O)N2C=C(C#C)C(=O)NC2=O"  
FDU  SMILES            CACTVS                3.370  "OC[CH]1O[CH]([CH](F)[CH]1O)N2C=C(C#C)C(=O)NC2=O"  
FDU  SMILES_CANONICAL  "OpenEye OEToolkits"  1.7.6  "C#CC1=CN(C(=O)NC1=O)[C@H]2[C@H]([C@@H]([C@H](O2)CO)O)F"  
FDU  SMILES            "OpenEye OEToolkits"  1.7.6  "C#CC1=CN(C(=O)NC1=O)C2C(C(C(O2)CO)O)F"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
FDU  "SYSTEMATIC NAME"  ACDLabs               12.01  "1-(2-deoxy-2-fluoro-beta-D-arabinofuranosyl)-5-ethynylpyrimidine-2,4(1H,3H)-dione"  
FDU  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.7.6  "5-ethynyl-1-[(2R,3S,4R,5R)-3-fluoranyl-5-(hydroxymethyl)-4-oxidanyl-oxolan-2-yl]pyrimidine-2,4-dione"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
FDU  "Create component"  2014-02-12  RCSB  
FDU  "Modify synonyms"   2014-02-18  RCSB  
FDU  "Initial release"   2014-08-13  RCSB  
FDU  "Modify synonyms"   2021-03-01  PDBE  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     FDU
_pdbx_chem_comp_synonyms.name        "(2'S)-2'-DEOXY-2'-FLUORO-5-ETHYNYLURIDINE"
_pdbx_chem_comp_synonyms.provenance  ?
_pdbx_chem_comp_synonyms.type        ?
##
