data_53V
# 
_chem_comp.id                                    53V 
_chem_comp.name                                  "5-[(3R)-3-(5-methoxy-2',6'-dimethylbiphenyl-3-yl)but-1-yn-1-yl]-6-methylpyrimidine-2,4-diamine" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C24 H26 N4 O" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2008-09-15 
_chem_comp.pdbx_modified_date                    2011-06-04 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        386.489 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     53V 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        3EEM 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
53V C1   C1   C 0 1 Y N N 30.462 5.685  33.460 5.070  -0.746 -0.859 C1   53V 1  
53V C2   C2   C 0 1 N N N 22.493 6.903  36.559 -2.481 3.781  1.656  C2   53V 2  
53V C3   C3   C 0 1 Y N N 32.224 4.835  34.734 6.252  -0.435 1.097  C3   53V 3  
53V C6   C6   C 0 1 Y N N 29.957 6.305  34.633 3.905  -0.299 -0.205 C6   53V 4  
53V C12  C12  C 0 1 N N S 26.528 8.498  34.370 0.343  -0.094 -2.180 C12  53V 5  
53V C13  C13  C 0 1 N N N 26.434 9.365  33.122 0.473  0.860  -3.368 C13  53V 6  
53V C14  C14  C 0 1 Y N N 25.950 9.111  35.623 -0.723 0.413  -1.242 C14  53V 7  
53V C15  C15  C 0 1 Y N N 24.691 8.547  35.823 -0.591 1.659  -0.659 C15  53V 8  
53V C16  C16  C 0 1 Y N N 23.890 8.922  36.896 -1.570 2.132  0.205  C16  53V 9  
53V C17  C17  C 0 1 Y N N 24.417 9.898  37.764 -2.681 1.355  0.485  C17  53V 10 
53V C18  C18  C 0 1 Y N N 25.704 10.479 37.591 -2.814 0.099  -0.103 C18  53V 11 
53V C26  C26  C 0 1 N N N 24.902 9.930  40.299 -5.438 0.989  -0.936 C26  53V 12 
53V C20  C20  C 0 1 Y N N 25.682 11.192 39.906 -5.271 -0.318 -0.205 C20  53V 13 
53V C21  C21  C 0 1 Y N N 25.962 12.110 40.937 -6.372 -1.104 0.067  C21  53V 14 
53V C22  C22  C 0 1 Y N N 26.632 13.308 40.680 -6.221 -2.304 0.738  C22  53V 15 
53V C23  C23  C 0 1 Y N N 27.016 13.563 39.349 -4.965 -2.723 1.140  C23  53V 16 
53V C24  C24  C 0 1 Y N N 26.738 12.663 38.300 -3.857 -1.946 0.873  C24  53V 17 
53V C27  C27  C 0 1 N N N 27.242 13.087 36.924 -2.490 -2.404 1.312  C27  53V 18 
53V C25  C25  C 0 1 Y N N 26.066 11.433 38.563 -4.003 -0.738 0.192  C25  53V 19 
53V C19  C19  C 0 1 Y N N 26.502 10.078 36.485 -1.831 -0.366 -0.974 C19  53V 20 
53V O17  O17  O 0 1 N N N 22.624 8.325  37.056 -1.436 3.358  0.777  O17  53V 21 
53V C11  C11  C 0 1 N N N 27.790 7.770  34.551 1.628  -0.168 -1.467 C11  53V 22 
53V C10  C10  C 0 1 N N N 28.789 7.098  34.593 2.654  -0.227 -0.898 C10  53V 23 
53V C5   C5   C 0 1 Y N N 30.645 6.169  35.860 4.002  0.071  1.137  C5   53V 24 
53V C8   C8   C 0 1 N N N 30.179 6.835  37.204 2.788  0.555  1.886  C8   53V 25 
53V N4   N4   N 0 1 Y N N 31.758 5.425  35.857 5.175  -0.010 1.743  N4   53V 26 
53V N7   N7   N 0 1 N N N 33.345 4.123  34.830 7.457  -0.503 1.772  N7   53V 27 
53V N2   N2   N 0 1 Y N N 31.613 4.975  33.563 6.208  -0.797 -0.177 N2   53V 28 
53V N9   N9   N 0 1 N N N 29.823 5.798  32.276 5.028  -1.129 -2.187 N9   53V 29 
53V H2   H2   H 0 1 N N N 22.461 6.900  35.459 -2.250 4.773  2.042  H2   53V 30 
53V H2A  H2A  H 0 1 N N N 23.356 6.314  36.902 -3.424 3.813  1.110  H2A  53V 31 
53V H2B  H2B  H 0 1 N N N 21.566 6.461  36.954 -2.565 3.078  2.485  H2B  53V 32 
53V H12  H12  H 0 1 N N N 25.824 7.684  34.144 0.069  -1.086 -2.539 H12  53V 33 
53V H13  H13  H 0 1 N N N 26.411 10.426 33.413 1.243  0.493  -4.046 H13  53V 34 
53V H13A H13A H 0 0 N N N 27.308 9.179  32.480 -0.479 0.915  -3.896 H13A 53V 35 
53V H13B H13B H 0 0 N N N 25.515 9.116  32.571 0.747  1.852  -3.009 H13B 53V 36 
53V H15  H15  H 0 1 N N N 24.330 7.802  35.129 0.275  2.266  -0.875 H15  53V 37 
53V H17  H17  H 0 1 N N N 23.815 10.221 38.601 -3.443 1.721  1.157  H17  53V 38 
53V H26  H26  H 0 1 N N N 24.715 9.320  39.403 -5.603 1.790  -0.216 H26  53V 39 
53V H26A H26A H 0 0 N N N 25.489 9.347  41.024 -4.538 1.200  -1.514 H26A 53V 40 
53V H26B H26B H 0 0 N N N 23.942 10.219 40.752 -6.294 0.923  -1.608 H26B 53V 41 
53V H21  H21  H 0 1 N N N 25.652 11.883 41.946 -7.355 -0.781 -0.245 H21  53V 42 
53V H22  H22  H 0 1 N N N 26.847 14.011 41.471 -7.085 -2.915 0.949  H22  53V 43 
53V H23  H23  H 0 1 N N N 27.541 14.479 39.124 -4.853 -3.660 1.664  H23  53V 44 
53V H27  H27  H 0 1 N N N 26.390 13.189 36.236 -2.036 -3.001 0.521  H27  53V 45 
53V H27A H27A H 0 0 N N N 27.764 14.052 37.006 -1.864 -1.535 1.516  H27A 53V 46 
53V H27B H27B H 0 0 N N N 27.936 12.326 36.537 -2.581 -3.006 2.215  H27B 53V 47 
53V H19  H19  H 0 1 N N N 27.484 10.495 36.314 -1.933 -1.337 -1.434 H19  53V 48 
53V H8   H8   H 0 1 N N N 30.070 6.062  37.979 2.283  -0.294 2.348  H8   53V 49 
53V H8A  H8A  H 0 1 N N N 30.928 7.573  37.526 3.094  1.260  2.659  H8A  53V 50 
53V H8B  H8B  H 0 1 N N N 29.212 7.337  37.049 2.107  1.049  1.193  H8B  53V 51 
53V HN7  HN7  H 0 1 N N N 33.706 3.944  33.915 7.505  -0.242 2.705  HN7  53V 52 
53V HN7A HN7A H 0 0 N N N 34.020 4.635  35.361 8.254  -0.812 1.313  HN7A 53V 53 
53V HN9  HN9  H 0 1 N N N 28.835 5.826  32.431 4.192  -1.093 -2.676 HN9  53V 54 
53V HN9A HN9A H 0 0 N N N 30.113 6.640  31.820 5.836  -1.435 -2.629 HN9A 53V 55 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
53V C1  C6   DOUB Y N 1  
53V C1  N2   SING Y N 2  
53V C1  N9   SING N N 3  
53V C2  O17  SING N N 4  
53V C3  N4   SING Y N 5  
53V C3  N7   SING N N 6  
53V C3  N2   DOUB Y N 7  
53V C6  C10  SING N N 8  
53V C6  C5   SING Y N 9  
53V C12 C13  SING N N 10 
53V C12 C14  SING N N 11 
53V C12 C11  SING N N 12 
53V C14 C15  DOUB Y N 13 
53V C14 C19  SING Y N 14 
53V C15 C16  SING Y N 15 
53V C16 C17  DOUB Y N 16 
53V C16 O17  SING N N 17 
53V C17 C18  SING Y N 18 
53V C18 C25  SING Y N 19 
53V C18 C19  DOUB Y N 20 
53V C26 C20  SING N N 21 
53V C20 C21  DOUB Y N 22 
53V C20 C25  SING Y N 23 
53V C21 C22  SING Y N 24 
53V C22 C23  DOUB Y N 25 
53V C23 C24  SING Y N 26 
53V C24 C27  SING N N 27 
53V C24 C25  DOUB Y N 28 
53V C11 C10  TRIP N N 29 
53V C5  C8   SING N N 30 
53V C5  N4   DOUB Y N 31 
53V C2  H2   SING N N 32 
53V C2  H2A  SING N N 33 
53V C2  H2B  SING N N 34 
53V C12 H12  SING N N 35 
53V C13 H13  SING N N 36 
53V C13 H13A SING N N 37 
53V C13 H13B SING N N 38 
53V C15 H15  SING N N 39 
53V C17 H17  SING N N 40 
53V C26 H26  SING N N 41 
53V C26 H26A SING N N 42 
53V C26 H26B SING N N 43 
53V C21 H21  SING N N 44 
53V C22 H22  SING N N 45 
53V C23 H23  SING N N 46 
53V C27 H27  SING N N 47 
53V C27 H27A SING N N 48 
53V C27 H27B SING N N 49 
53V C19 H19  SING N N 50 
53V C8  H8   SING N N 51 
53V C8  H8A  SING N N 52 
53V C8  H8B  SING N N 53 
53V N7  HN7  SING N N 54 
53V N7  HN7A SING N N 55 
53V N9  HN9  SING N N 56 
53V N9  HN9A SING N N 57 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
53V SMILES           ACDLabs              10.04 "C(#CC(c2cc(c1c(cccc1C)C)cc(OC)c2)C)c3c(nc(nc3C)N)N"                                                                                                       
53V SMILES_CANONICAL CACTVS               3.341 "COc1cc(cc(c1)c2c(C)cccc2C)[C@@H](C)C#Cc3c(C)nc(N)nc3N"                                                                                                    
53V SMILES           CACTVS               3.341 "COc1cc(cc(c1)c2c(C)cccc2C)[CH](C)C#Cc3c(C)nc(N)nc3N"                                                                                                      
53V SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "Cc1cccc(c1c2cc(cc(c2)OC)[C@@H](C)C#Cc3c(nc(nc3N)N)C)C"                                                                                                    
53V SMILES           "OpenEye OEToolkits" 1.5.0 "Cc1cccc(c1c2cc(cc(c2)OC)C(C)C#Cc3c(nc(nc3N)N)C)C"                                                                                                         
53V InChI            InChI                1.03  "InChI=1S/C24H26N4O/c1-14(9-10-21-17(4)27-24(26)28-23(21)25)18-11-19(13-20(12-18)29-5)22-15(2)7-6-8-16(22)3/h6-8,11-14H,1-5H3,(H4,25,26,27,28)/t14-/m0/s1" 
53V InChIKey         InChI                1.03  XZXVRKHUCSXVBM-AWEZNQCLSA-N                                                                                                                                
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
53V "SYSTEMATIC NAME" ACDLabs              10.04 "5-[(3R)-3-(5-methoxy-2',6'-dimethylbiphenyl-3-yl)but-1-yn-1-yl]-6-methylpyrimidine-2,4-diamine" 
53V "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "5-[(3R)-3-[3-(2,6-dimethylphenyl)-5-methoxy-phenyl]but-1-ynyl]-6-methyl-pyrimidine-2,4-diamine" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
53V "Create component"     2008-09-15 RCSB 
53V "Modify aromatic_flag" 2011-06-04 RCSB 
53V "Modify descriptor"    2011-06-04 RCSB 
# 
