data_5DV
#

_chem_comp.id                                   5DV
_chem_comp.name                                 "methyl (R)-(2-carbamoyl-5-chloro-1H-indol-3-yl)[3-(2-cyanoethyl)-5-methylphenyl]phosphinate"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C20 H19 Cl N3 O3 P"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2015-09-11
_chem_comp.pdbx_modified_date                   2019-09-04
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       415.810
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    5DV
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       5DOP
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 EBI
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
5DV  NBB  N1   N   0  1  N  N  N   -9.393  144.791  178.913  -7.575   1.179  -0.846  NBB  5DV   1  
5DV  CBA  C1   C   0  1  N  N  N   -9.617  144.056  178.078  -6.510   0.795  -0.928  CBA  5DV   2  
5DV  CAZ  C2   C   0  1  N  N  N   -9.901  143.131  177.030  -5.128   0.296  -1.033  CAZ  5DV   3  
5DV  CAY  C3   C   0  1  N  N  N  -11.192  142.858  176.612  -4.881  -0.755   0.051  CAY  5DV   4  
5DV  CAT  C4   C   0  1  Y  N  N  -11.215  141.907  175.647  -3.468  -1.265  -0.057  CAT  5DV   5  
5DV  CAS  C5   C   0  1  Y  N  N  -11.423  142.164  174.313  -2.452  -0.641   0.642  CAS  5DV   6  
5DV  CAU  C6   C   0  1  Y  N  N  -10.962  140.681  176.102  -3.187  -2.362  -0.852  CAU  5DV   7  
5DV  CAV  C7   C   0  1  Y  N  N  -10.942  139.698  175.209  -1.890  -2.829  -0.951  CAV  5DV   8  
5DV  CAX  C8   C   0  1  N  N  N  -10.697  138.328  175.669  -1.585  -4.025  -1.817  CAX  5DV   9  
5DV  CAW  C9   C   0  1  Y  N  N  -11.156  139.917  173.882  -0.874  -2.201  -0.256  CAW  5DV  10  
5DV  CAR  C10  C   0  1  Y  N  N  -11.385  141.160  173.397  -1.155  -1.109   0.543  CAR  5DV  11  
5DV  PAO  P1   P   0  1  N  N  R  -11.609  141.449  171.914   0.178  -0.289   1.461  PAO  5DV  12  
5DV  OAQ  O1   O   0  1  N  N  N  -11.746  142.737  172.116   1.222  -1.394   1.992  OAQ  5DV  13  
5DV  CBC  C11  C   0  1  N  N  N  -11.624  143.391  171.011   2.328  -1.075   2.838  CBC  5DV  14  
5DV  OAP  O2   O   0  1  N  N  N  -12.851  141.131  171.391  -0.394   0.443   2.613  OAP  5DV  15  
5DV  CAI  C12  C   0  1  Y  N  N  -10.425  141.441  170.887   1.035   0.877   0.368  CAI  5DV  16  
5DV  CAE  C13  C   0  1  Y  N  N   -9.230  142.127  170.917   2.321   0.701  -0.197  CAE  5DV  17  
5DV  CAF  C14  C   0  1  Y  N  N   -8.635  142.992  171.798   3.274  -0.323  -0.119  CAF  5DV  18  
5DV  CAA  C15  C   0  1  Y  N  N   -7.398  143.505  171.539   4.455  -0.205  -0.794  CAA  5DV  19  
5DV  CL   CL1  CL  0  0  N  N  N   -6.580  144.576  172.584   5.634  -1.476  -0.695  CL   5DV  20  
5DV  CAB  C16  C   0  1  Y  N  N   -6.775  143.146  170.402   4.721   0.923  -1.561  CAB  5DV  21  
5DV  CAC  C17  C   0  1  Y  N  N   -7.346  142.288  169.522   3.800   1.943  -1.653  CAC  5DV  22  
5DV  CAD  C18  C   0  1  Y  N  N   -8.563  141.785  169.768   2.590   1.845  -0.974  CAD  5DV  23  
5DV  NAG  N2   N   0  1  Y  N  N   -9.268  140.957  169.039   1.498   2.675  -0.873  NAG  5DV  24  
5DV  CAH  C19  C   0  1  Y  N  N  -10.390  140.752  169.688   0.556   2.075  -0.059  CAH  5DV  25  
5DV  CAL  C20  C   0  1  N  N  N  -11.434  139.872  169.134  -0.754   2.643   0.291  CAL  5DV  26  
5DV  OAN  O3   O   0  1  N  N  N  -11.511  139.696  167.940  -1.467   2.076   1.097  OAN  5DV  27  
5DV  NAM  N3   N   0  1  N  N  N  -12.272  139.426  169.991  -1.164   3.793  -0.279  NAM  5DV  28  
5DV  H1   H1   H   0  1  N  N  N   -9.363  143.498  176.143  -4.978  -0.152  -2.015  H1   5DV  29  
5DV  H2   H2   H   0  1  N  N  N   -9.472  142.169  177.346  -4.432   1.125  -0.901  H2   5DV  30  
5DV  H3   H3   H   0  1  N  N  N  -11.779  142.506  177.473  -5.032  -0.307   1.033  H3   5DV  31  
5DV  H4   H4   H   0  1  N  N  N  -11.641  143.780  176.215  -5.578  -1.583  -0.081  H4   5DV  32  
5DV  H5   H5   H   0  1  N  N  N  -11.619  143.175  173.989  -2.672   0.213   1.266  H5   5DV  33  
5DV  H6   H6   H   0  1  N  N  N  -10.781  140.495  177.150  -3.981  -2.852  -1.395  H6   5DV  34  
5DV  H7   H7   H   0  1  N  N  N  -11.654  137.848  175.920  -1.348  -3.691  -2.827  H7   5DV  35  
5DV  H8   H8   H   0  1  N  N  N  -10.199  137.757  174.871  -0.733  -4.564  -1.403  H8   5DV  36  
5DV  H9   H9   H   0  1  N  N  N  -10.053  138.350  176.561  -2.453  -4.683  -1.846  H9   5DV  37  
5DV  H10  H10  H   0  1  N  N  N  -11.143  139.079  173.200   0.140  -2.566  -0.334  H10  5DV  38  
5DV  H11  H11  H   0  1  N  N  N  -11.743  144.467  171.206   2.887  -1.984   3.063  H11  5DV  39  
5DV  H12  H12  H   0  1  N  N  N  -10.628  143.204  170.582   2.980  -0.363   2.332  H12  5DV  40  
5DV  H14  H14  H   0  1  N  N  N   -9.150  143.270  172.706   3.076  -1.203   0.475  H14  5DV  41  
5DV  H15  H15  H   0  1  N  N  N   -5.797  143.551  170.186   5.660   1.001  -2.090  H15  5DV  42  
5DV  H16  H16  H   0  1  N  N  N   -6.819  142.009  168.621   4.017   2.816  -2.251  H16  5DV  43  
5DV  H17  H17  H   0  1  N  N  N   -9.004  140.559  168.161   1.403   3.538  -1.305  H17  5DV  44  
5DV  H18  H18  H   0  1  N  N  N  -13.059  138.889  169.688  -0.595   4.246  -0.921  H18  5DV  45  
5DV  H19  H19  H   0  1  N  N  N  -12.140  139.614  170.964  -2.028   4.168  -0.048  H19  5DV  46  
5DV  H21  H21  H   0  1  N  N  N  -12.397  143.060  170.302   1.961  -0.636   3.766  H21  5DV  47  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
5DV  NBB  CBA  TRIP  N  N   1  
5DV  CBA  CAZ  SING  N  N   2  
5DV  CAZ  CAY  SING  N  N   3  
5DV  CAY  CAT  SING  N  N   4  
5DV  CAT  CAS  DOUB  Y  N   5  
5DV  CAT  CAU  SING  Y  N   6  
5DV  CAS  CAR  SING  Y  N   7  
5DV  CAU  CAV  DOUB  Y  N   8  
5DV  CAV  CAX  SING  N  N   9  
5DV  CAV  CAW  SING  Y  N  10  
5DV  CAW  CAR  DOUB  Y  N  11  
5DV  CAR  PAO  SING  N  N  12  
5DV  PAO  OAQ  SING  N  N  13  
5DV  PAO  OAP  DOUB  N  N  14  
5DV  PAO  CAI  SING  N  N  15  
5DV  OAQ  CBC  SING  N  N  16  
5DV  CAI  CAE  SING  Y  N  17  
5DV  CAI  CAH  DOUB  Y  N  18  
5DV  CAE  CAF  DOUB  Y  N  19  
5DV  CAE  CAD  SING  Y  N  20  
5DV  CAF  CAA  SING  Y  N  21  
5DV  CAA  CL   SING  N  N  22  
5DV  CAA  CAB  DOUB  Y  N  23  
5DV  CAB  CAC  SING  Y  N  24  
5DV  CAC  CAD  DOUB  Y  N  25  
5DV  CAD  NAG  SING  Y  N  26  
5DV  NAG  CAH  SING  Y  N  27  
5DV  CAH  CAL  SING  N  N  28  
5DV  CAL  OAN  DOUB  N  N  29  
5DV  CAL  NAM  SING  N  N  30  
5DV  CAZ  H1   SING  N  N  31  
5DV  CAZ  H2   SING  N  N  32  
5DV  CAY  H3   SING  N  N  33  
5DV  CAY  H4   SING  N  N  34  
5DV  CAS  H5   SING  N  N  35  
5DV  CAU  H6   SING  N  N  36  
5DV  CAX  H7   SING  N  N  37  
5DV  CAX  H8   SING  N  N  38  
5DV  CAX  H9   SING  N  N  39  
5DV  CAW  H10  SING  N  N  40  
5DV  CBC  H11  SING  N  N  41  
5DV  CBC  H12  SING  N  N  42  
5DV  CAF  H14  SING  N  N  43  
5DV  CAB  H15  SING  N  N  44  
5DV  CAC  H16  SING  N  N  45  
5DV  NAG  H17  SING  N  N  46  
5DV  NAM  H18  SING  N  N  47  
5DV  NAM  H19  SING  N  N  48  
5DV  CBC  H21  SING  N  N  49  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
5DV  SMILES            ACDLabs               12.01  "N#CCCc1cc(cc(c1)C)P(OC)(=O)c3c2cc(Cl)ccc2nc3C(=O)N"  
5DV  InChI             InChI                 1.03   "InChI=1S/C20H19ClN3O3P/c1-12-8-13(4-3-7-22)10-15(9-12)28(26,27-2)19-16-11-14(21)5-6-17(16)24-18(19)20(23)25/h5-6,8-11,24H,3-4H2,1-2H3,(H2,23,25)/t28-/m1/s1"  
5DV  InChIKey          InChI                 1.03   KJQCBIWCQKNBKR-MUUNZHRXSA-N  
5DV  SMILES_CANONICAL  CACTVS                3.385  "CO[P@](=O)(c1cc(C)cc(CCC#N)c1)c2c([nH]c3ccc(Cl)cc23)C(N)=O"  
5DV  SMILES            CACTVS                3.385  "CO[P](=O)(c1cc(C)cc(CCC#N)c1)c2c([nH]c3ccc(Cl)cc23)C(N)=O"  
5DV  SMILES_CANONICAL  "OpenEye OEToolkits"  1.9.2  "Cc1cc(cc(c1)[P@](=O)(c2c3cc(ccc3[nH]c2C(=O)N)Cl)OC)CCC#N"  
5DV  SMILES            "OpenEye OEToolkits"  1.9.2  "Cc1cc(cc(c1)P(=O)(c2c3cc(ccc3[nH]c2C(=O)N)Cl)OC)CCC#N"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
5DV  "SYSTEMATIC NAME"  ACDLabs               12.01  "methyl (R)-(2-carbamoyl-5-chloro-1H-indol-3-yl)[3-(2-cyanoethyl)-5-methylphenyl]phosphinate"  
5DV  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.9.2  "5-chloranyl-3-[[3-(2-cyanoethyl)-5-methyl-phenyl]-methoxy-phosphoryl]-1H-indole-2-carboxamide"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
5DV  "Create component"    2015-09-11  EBI   
5DV  "Initial release"     2016-02-17  RCSB  
5DV  "Other modification"  2019-09-04  EBI   
##
