data_6BV
#

_chem_comp.id                                   6BV
_chem_comp.name                                 "(2~{R},3~{S},4~{S},5~{R},6~{R})-6-(hydroxymethyl)-4-[(2~{S},3~{R},4~{S},5~{S},6~{R})-6-(hydroxymethyl)-3,4,5-tris(oxidanyl)oxan-2-yl]sulfanyl-oxane-2,3,5-triol"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C12 H22 O10 S"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2019-10-02
_chem_comp.pdbx_modified_date                   2020-08-14
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       358.362
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    6BV
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       6L1J
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 PDBJ
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
6BV  O41  O1   O  0  1  N  N  N  26.036  28.804  34.571   2.567   0.791  -2.315  O41  6BV   1  
6BV  C41  C1   C  0  1  N  N  R  26.541  29.567  35.681   2.699   0.772  -0.892  C41  6BV   2  
6BV  C51  C2   C  0  1  N  N  R  27.600  30.523  35.044   3.836  -0.174  -0.497  C51  6BV   3  
6BV  C61  C3   C  0  1  N  N  N  26.944  31.449  34.029   5.155   0.347  -1.071  C61  6BV   4  
6BV  O61  O2   O  0  1  N  N  N  25.869  32.056  34.614   6.196  -0.595  -0.802  O61  6BV   5  
6BV  O01  O3   O  0  1  N  N  N  28.286  31.287  36.106   3.928  -0.236   0.928  O01  6BV   6  
6BV  C11  C4   C  0  1  N  N  R  29.221  30.361  36.817   2.752  -0.737   1.567  C11  6BV   7  
6BV  O11  O4   O  0  1  N  N  N  30.079  31.180  37.629   2.961  -0.782   2.980  O11  6BV   8  
6BV  C21  C5   C  0  1  N  N  S  28.303  29.370  37.601   1.571   0.186   1.255  C21  6BV   9  
6BV  O21  O5   O  0  1  N  N  N  29.049  28.398  38.350   0.382  -0.343   1.845  O21  6BV  10  
6BV  C31  C6   C  0  1  N  N  S  27.358  28.611  36.600   1.392   0.277  -0.264  C31  6BV  11  
6BV  S12  S1   S  0  1  N  N  N  26.295  27.424  37.387   0.055   1.441  -0.648  S12  6BV  12  
6BV  C12  C7   C  0  1  N  N  S  25.917  26.013  36.299  -1.411   0.619   0.036  C12  6BV  13  
6BV  O02  O6   O  0  1  N  N  N  25.478  26.318  35.030  -1.655  -0.594  -0.679  O02  6BV  14  
6BV  C52  C8   C  0  1  N  N  R  25.035  25.192  34.191  -2.778  -1.337  -0.202  C52  6BV  15  
6BV  C62  C9   C  0  1  N  N  N  24.574  25.647  32.760  -2.925  -2.621  -1.020  C62  6BV  16  
6BV  O62  O7   O  0  1  N  N  N  23.652  26.745  33.004  -1.792  -3.463  -0.792  O62  6BV  17  
6BV  C42  C10  C  0  1  N  N  S  23.747  24.554  34.950  -4.046  -0.491  -0.347  C42  6BV  18  
6BV  O42  O8   O  0  1  N  N  N  23.216  23.444  34.306  -5.162  -1.210   0.183  O42  6BV  19  
6BV  C32  C11  C  0  1  N  N  S  24.316  24.026  36.311  -3.868   0.820   0.425  C32  6BV  20  
6BV  O32  O9   O  0  1  N  N  N  23.218  23.366  37.057  -5.017   1.647   0.235  O32  6BV  21  
6BV  C22  C12  C  0  1  N  N  R  24.985  25.118  37.121  -2.624   1.543  -0.100  C22  6BV  22  
6BV  O22  O10  O  0  1  N  N  N  25.728  24.583  38.223  -2.406   2.732   0.662  O22  6BV  23  
6BV  H1   H1   H  0  1  N  N  N  25.379  28.192  34.880   3.359   1.095  -2.779  H1   6BV  24  
6BV  H2   H2   H  0  1  N  N  N  25.768  30.117  36.237   2.918   1.777  -0.533  H2   6BV  25  
6BV  H3   H3   H  0  1  N  N  N  28.340  29.902  34.517   3.635  -1.170  -0.892  H3   6BV  26  
6BV  H4   H4   H  0  1  N  N  N  26.610  30.865  33.158   5.055   0.479  -2.148  H4   6BV  27  
6BV  H5   H5   H  0  1  N  N  N  27.667  32.212  33.704   5.401   1.303  -0.608  H5   6BV  28  
6BV  H6   H6   H  0  1  N  N  N  25.453  32.636  33.988   7.063  -0.329  -1.138  H6   6BV  29  
6BV  H7   H7   H  0  1  N  N  N  29.811  29.793  36.082   2.537  -1.740   1.199  H7   6BV  30  
6BV  H8   H8   H  0  1  N  N  N  30.692  30.628  38.100   3.696  -1.349   3.252  H8   6BV  31  
6BV  H9   H9   H  0  1  N  N  N  27.671  29.958  38.283   1.768   1.179   1.660  H9   6BV  32  
6BV  H10  H10  H  0  1  N  N  N  29.626  28.842  38.960   0.427  -0.433   2.807  H10  6BV  33  
6BV  H11  H11  H  0  1  N  N  N  28.007  28.013  35.943   1.145  -0.707  -0.662  H11  6BV  34  
6BV  H12  H12  H  0  1  N  N  N  26.875  25.478  36.218  -1.242   0.393   1.089  H12  6BV  35  
6BV  H13  H13  H  0  1  N  N  N  25.820  24.426  34.105  -2.627  -1.589   0.848  H13  6BV  36  
6BV  H14  H14  H  0  1  N  N  N  24.067  24.824  32.235  -3.832  -3.144  -0.716  H14  6BV  37  
6BV  H15  H15  H  0  1  N  N  N  25.434  25.987  32.165  -2.986  -2.373  -2.079  H15  6BV  38  
6BV  H16  H16  H  0  1  N  N  N  23.327  27.076  32.175  -1.818  -4.297  -1.280  H16  6BV  39  
6BV  H17  H17  H  0  1  N  N  N  23.001  25.342  35.130  -4.220  -0.273  -1.401  H17  6BV  40  
6BV  H18  H18  H  0  1  N  N  N  22.470  23.120  34.797  -6.001  -0.732   0.124  H18  6BV  41  
6BV  H19  H19  H  0  1  N  N  N  25.077  23.267  36.074  -3.745   0.604   1.486  H19  6BV  42  
6BV  H20  H20  H  0  1  N  N  N  23.549  23.040  37.886  -4.972   2.495   0.697  H20  6BV  43  
6BV  H21  H21  H  0  1  N  N  N  24.188  25.762  37.522  -2.768   1.803  -1.148  H21  6BV  44  
6BV  H22  H22  H  0  1  N  N  N  25.164  24.024  38.744  -1.630   3.239   0.387  H22  6BV  45  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
6BV  C62  O62  SING  N  N   1  
6BV  C62  C52  SING  N  N   2  
6BV  C61  O61  SING  N  N   3  
6BV  C61  C51  SING  N  N   4  
6BV  C52  C42  SING  N  N   5  
6BV  C52  O02  SING  N  N   6  
6BV  O42  C42  SING  N  N   7  
6BV  O41  C41  SING  N  N   8  
6BV  C42  C32  SING  N  N   9  
6BV  O02  C12  SING  N  N  10  
6BV  C51  C41  SING  N  N  11  
6BV  C51  O01  SING  N  N  12  
6BV  C41  C31  SING  N  N  13  
6BV  O01  C11  SING  N  N  14  
6BV  C12  C22  SING  N  N  15  
6BV  C12  S12  SING  N  N  16  
6BV  C32  O32  SING  N  N  17  
6BV  C32  C22  SING  N  N  18  
6BV  C31  S12  SING  N  N  19  
6BV  C31  C21  SING  N  N  20  
6BV  C11  C21  SING  N  N  21  
6BV  C11  O11  SING  N  N  22  
6BV  C22  O22  SING  N  N  23  
6BV  C21  O21  SING  N  N  24  
6BV  O41  H1   SING  N  N  25  
6BV  C41  H2   SING  N  N  26  
6BV  C51  H3   SING  N  N  27  
6BV  C61  H4   SING  N  N  28  
6BV  C61  H5   SING  N  N  29  
6BV  O61  H6   SING  N  N  30  
6BV  C11  H7   SING  N  N  31  
6BV  O11  H8   SING  N  N  32  
6BV  C21  H9   SING  N  N  33  
6BV  O21  H10  SING  N  N  34  
6BV  C31  H11  SING  N  N  35  
6BV  C12  H12  SING  N  N  36  
6BV  C52  H13  SING  N  N  37  
6BV  C62  H14  SING  N  N  38  
6BV  C62  H15  SING  N  N  39  
6BV  O62  H16  SING  N  N  40  
6BV  C42  H17  SING  N  N  41  
6BV  O42  H18  SING  N  N  42  
6BV  C32  H19  SING  N  N  43  
6BV  O32  H20  SING  N  N  44  
6BV  C22  H21  SING  N  N  45  
6BV  O22  H22  SING  N  N  46  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
6BV  InChI             InChI                 1.03   "InChI=1S/C12H22O10S/c13-1-3-5(15)7(17)8(18)12(22-3)23-10-6(16)4(2-14)21-11(20)9(10)19/h3-20H,1-2H2/t3-,4-,5-,6-,7+,8-,9-,10+,11-,12+/m1/s1"  
6BV  InChIKey          InChI                 1.03   XRTVCRDMGYFFNB-CSOAUFAESA-N  
6BV  SMILES_CANONICAL  CACTVS                3.385  "OC[C@H]1O[C@@H](S[C@@H]2[C@@H](O)[C@H](O)O[C@H](CO)[C@H]2O)[C@H](O)[C@@H](O)[C@@H]1O"  
6BV  SMILES            CACTVS                3.385  "OC[CH]1O[CH](S[CH]2[CH](O)[CH](O)O[CH](CO)[CH]2O)[CH](O)[CH](O)[CH]1O"  
6BV  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "C([C@@H]1[C@H]([C@@H]([C@H]([C@@H](O1)O)O)S[C@H]2[C@@H]([C@H]([C@@H]([C@H](O2)CO)O)O)O)O)O"  
6BV  SMILES            "OpenEye OEToolkits"  2.0.7  "C(C1C(C(C(C(O1)O)O)SC2C(C(C(C(O2)CO)O)O)O)O)O"  
#
_pdbx_chem_comp_identifier.comp_id          6BV
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version  2.0.7
_pdbx_chem_comp_identifier.identifier       "(2~{R},3~{S},4~{S},5~{R},6~{R})-6-(hydroxymethyl)-4-[(2~{S},3~{R},4~{S},5~{S},6~{R})-6-(hydroxymethyl)-3,4,5-tris(oxidanyl)oxan-2-yl]sulfanyl-oxane-2,3,5-triol"
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
6BV  "Create component"  2019-10-02  PDBJ  
6BV  "Initial release"   2020-08-19  RCSB  
##
