data_C8V
# 
_chem_comp.id                                    C8V 
_chem_comp.name                                  "(2S,5R)-1-formyl-N'-[(3R)-piperidine-3-carbonyl]-5-[(sulfooxy)amino]piperidine-2-carbohydrazide" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C13 H23 N5 O7 S" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         "OPEN FORM -  Zidebactam" 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2017-09-19 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        393.416 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     C8V 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        6B1J 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
C8V OAF O1  O 0 1 N N N N N N -9.165  -0.546 -1.627 -7.584 -0.921 0.778  OAF C8V 1  
C8V SAZ S1  S 0 1 N N N N N N -9.131  -1.664 -0.634 -6.804 0.012  0.043  SAZ C8V 2  
C8V OAD O2  O 0 1 N N N N N N -8.126  -1.393 0.416  -6.959 -0.361 -1.425 OAD C8V 3  
C8V OAE O3  O 0 1 N N N N N N -9.035  -3.041 -1.179 -6.994 1.417  0.122  OAE C8V 4  
C8V OAS O4  O 0 1 N N N N N N -10.559 -1.607 -0.001 -5.353 -0.248 0.423  OAS C8V 5  
C8V NAR N1  N 0 1 N N N N N N -10.813 -2.645 1.003  -4.416 0.751  -0.090 NAR C8V 6  
C8V CAV C1  C 0 1 N N R N N N -11.472 -2.174 2.271  -3.039 0.438  0.314  CAV C8V 7  
C8V CAK C2  C 0 1 N N N N N N -12.655 -1.289 1.876  -2.238 1.735  0.451  CAK C8V 8  
C8V CB  C3  C 0 1 N N N N N N -12.248 0.082  1.569  -0.813 1.411  0.904  CB  C8V 9  
C8V CAN C4  C 0 1 N N N N N N -10.569 -1.486 3.325  -2.384 -0.452 -0.747 CAN C8V 10 
C8V N   N2  N 0 1 N N N N N N -10.314 -0.053 2.908  -0.972 -0.649 -0.394 N   C8V 11 
C8V CAG C5  C 0 1 N N N N N N -9.064  0.394  2.615  -0.455 -1.890 -0.295 CAG C8V 12 
C8V OAA O5  O 0 1 N N N N N N -8.785  1.487  2.122  -1.178 -2.858 -0.402 OAA C8V 13 
C8V CA  C6  C 0 1 N N S N N N -11.538 0.701  2.768  -0.133 0.533  -0.151 CA  C8V 14 
C8V C   C7  C 0 1 N N N N N N -12.227 1.070  3.939  1.220  0.098  0.349  C   C8V 15 
C8V O   O6  O 0 1 N N N N N N -11.805 0.764  5.083  1.304  -0.755 1.207  O   C8V 16 
C8V NAQ N3  N 0 1 N N N N N N -13.482 1.559  3.773  2.338  0.656  -0.157 NAQ C8V 17 
C8V NAP N4  N 0 1 N N N N N N -14.156 2.047  4.845  3.595  0.252  0.308  NAP C8V 18 
C8V CAT C8  C 0 1 N N N N N N -13.882 3.347  5.151  4.713  0.810  -0.198 CAT C8V 19 
C8V OAB O7  O 0 1 N N N N N N -12.931 3.990  4.722  4.629  1.663  -1.056 OAB C8V 20 
C8V CAW C9  C 0 1 N N R N N N -14.895 4.064  6.083  6.066  0.375  0.303  CAW C8V 21 
C8V CAJ C10 C 0 1 N N N N N N -16.199 4.154  5.332  7.159  1.155  -0.433 CAJ C8V 22 
C8V CAH C11 C 0 1 N N N N N N -16.126 5.039  4.104  8.531  0.665  0.038  CAH C8V 23 
C8V CAI C12 C 0 1 N N N N N N -15.706 6.448  4.564  8.644  -0.840 -0.216 CAI C8V 24 
C8V NAO N5  N 0 1 N N N N N N -14.392 6.322  5.240  7.577  -1.542 0.510  NAO C8V 25 
C8V CAM C13 C 0 1 N N N N N N -14.471 5.463  6.458  6.251  -1.121 0.041  CAM C8V 26 
C8V H1  H1  H 0 1 N N N N N N -11.404 -3.337 0.588  -4.488 0.834  -1.093 H1  C8V 27 
C8V H2  H2  H 0 1 N N N N N N -11.895 -3.064 2.760  -3.050 -0.086 1.270  H2  C8V 28 
C8V H3  H3  H 0 1 N N N N N N -13.373 -1.266 2.709  -2.207 2.245  -0.512 H3  C8V 29 
C8V H4  H4  H 0 1 N N N N N N -13.138 -1.721 0.987  -2.716 2.380  1.188  H4  C8V 30 
C8V H5  H5  H 0 1 N N N N N N -11.565 0.074  0.707  -0.250 2.337  1.023  H5  C8V 31 
C8V H6  H6  H 0 1 N N N N N N -13.139 0.680  1.326  -0.845 0.879  1.854  H6  C8V 32 
C8V H7  H7  H 0 1 N N N N N N -11.071 -1.500 4.304  -2.891 -1.417 -0.779 H7  C8V 33 
C8V H8  H8  H 0 1 N N N N N N -9.612  -2.024 3.396  -2.456 0.030  -1.722 H8  C8V 34 
C8V H9  H9  H 0 1 N Y N N N N -8.241  -0.270 2.835  0.603  -2.022 -0.121 H9  C8V 35 
C8V H10 H10 H 0 1 N N N N N N -11.191 1.663  2.364  -0.019 1.096  -1.077 H10 C8V 36 
C8V H11 H11 H 0 1 N N N N N N -13.907 1.560  2.868  2.271  1.338  -0.843 H11 C8V 37 
C8V H12 H12 H 0 1 N N N N N N -14.804 1.495  5.370  3.662  -0.431 0.995  H12 C8V 38 
C8V H13 H13 H 0 1 N N N N N N -15.033 3.463  6.994  6.138  0.569  1.373  H13 C8V 39 
C8V H14 H14 H 0 1 N N N N N N -16.964 4.560  6.010  7.062  0.992  -1.507 H14 C8V 40 
C8V H15 H15 H 0 1 N N N N N N -16.490 3.141  5.015  7.056  2.219  -0.216 H15 C8V 41 
C8V H16 H16 H 0 1 N N N N N N -17.110 5.083  3.615  9.312  1.187  -0.514 H16 C8V 42 
C8V H17 H17 H 0 1 N N N N N N -15.383 4.639  3.398  8.642  0.864  1.104  H17 C8V 43 
C8V H18 H18 H 0 1 N N N N N N -15.619 7.117  3.695  8.546  -1.036 -1.284 H18 C8V 44 
C8V H19 H19 H 0 1 N N N N N N -16.452 6.852  5.264  9.614  -1.195 0.131  H19 C8V 45 
C8V H20 H20 H 0 1 N N N N N N -13.738 5.917  4.601  7.687  -2.542 0.436  H20 C8V 46 
C8V H22 H22 H 0 1 N N N N N N -13.483 5.426  6.941  5.483  -1.681 0.576  H22 C8V 47 
C8V H23 H23 H 0 1 N N N N N N -15.205 5.890  7.157  6.164  -1.317 -1.027 H23 C8V 48 
C8V H24 H24 H 0 1 N N N N N N -7.705  -0.559 0.244  -7.853 -0.232 -1.771 H24 C8V 49 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
C8V OAF SAZ DOUB N N 1  
C8V OAE SAZ DOUB N N 2  
C8V SAZ OAS SING N N 3  
C8V SAZ OAD SING N N 4  
C8V OAS NAR SING N N 5  
C8V NAR CAV SING N N 6  
C8V CB  CAK SING N N 7  
C8V CB  CA  SING N N 8  
C8V CAK CAV SING N N 9  
C8V OAA CAG DOUB N N 10 
C8V CAV CAN SING N N 11 
C8V CAG N   SING N N 12 
C8V CA  N   SING N N 13 
C8V CA  C   SING N N 14 
C8V N   CAN SING N N 15 
C8V NAQ C   SING N N 16 
C8V NAQ NAP SING N N 17 
C8V C   O   DOUB N N 18 
C8V CAH CAI SING N N 19 
C8V CAH CAJ SING N N 20 
C8V CAI NAO SING N N 21 
C8V OAB CAT DOUB N N 22 
C8V NAP CAT SING N N 23 
C8V CAT CAW SING N N 24 
C8V NAO CAM SING N N 25 
C8V CAJ CAW SING N N 26 
C8V CAW CAM SING N N 27 
C8V NAR H1  SING N N 28 
C8V CAV H2  SING N N 29 
C8V CAK H3  SING N N 30 
C8V CAK H4  SING N N 31 
C8V CB  H5  SING N N 32 
C8V CB  H6  SING N N 33 
C8V CAN H7  SING N N 34 
C8V CAN H8  SING N N 35 
C8V CAG H9  SING N N 36 
C8V CA  H10 SING N N 37 
C8V NAQ H11 SING N N 38 
C8V NAP H12 SING N N 39 
C8V CAW H13 SING N N 40 
C8V CAJ H14 SING N N 41 
C8V CAJ H15 SING N N 42 
C8V CAH H16 SING N N 43 
C8V CAH H17 SING N N 44 
C8V CAI H18 SING N N 45 
C8V CAI H19 SING N N 46 
C8V NAO H20 SING N N 47 
C8V CAM H22 SING N N 48 
C8V CAM H23 SING N N 49 
C8V OAD H24 SING N N 50 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
C8V SMILES           ACDLabs              12.01 "O=S(ONC1CN(C=O)C(CC1)C(=O)NNC(C2CNCCC2)=O)(O)=O"                                                                                                                     
C8V InChI            InChI                1.03  "InChI=1S/C13H23N5O7S/c19-8-18-7-10(17-25-26(22,23)24)3-4-11(18)13(21)16-15-12(20)9-2-1-5-14-6-9/h8-11,14,17H,1-7H2,(H,15,20)(H,16,21)(H,22,23,24)/t9-,10-,11+/m1/s1" 
C8V InChIKey         InChI                1.03  KMYLRFCWFBWPGR-MXWKQRLJSA-N                                                                                                                                           
C8V SMILES_CANONICAL CACTVS               3.385 "O[S](=O)(=O)ON[C@@H]1CC[C@H](N(C1)C=O)C(=O)NNC(=O)[C@@H]2CCCNC2"                                                                                                     
C8V SMILES           CACTVS               3.385 "O[S](=O)(=O)ON[CH]1CC[CH](N(C1)C=O)C(=O)NNC(=O)[CH]2CCCNC2"                                                                                                          
C8V SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "C1C[C@H](CNC1)C(=O)NNC(=O)[C@@H]2CC[C@H](CN2C=O)NOS(=O)(=O)O"                                                                                                        
C8V SMILES           "OpenEye OEToolkits" 2.0.6 "C1CC(CNC1)C(=O)NNC(=O)C2CCC(CN2C=O)NOS(=O)(=O)O"                                                                                                                     
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
C8V "SYSTEMATIC NAME" ACDLabs              12.01 "(2S,5R)-1-formyl-N'-[(3R)-piperidine-3-carbonyl]-5-[(sulfooxy)amino]piperidine-2-carbohydrazide"                        
C8V "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 "[[(3~{R},6~{S})-1-methanoyl-6-[[[(3~{R})-piperidin-3-yl]carbonylamino]carbamoyl]piperidin-3-yl]amino] hydrogen sulfate" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
C8V "Create component" 2017-09-19 RCSB 
C8V "Initial release"  2018-08-01 RCSB 
C8V "Modify synonyms"  2021-03-01 PDBE 
C8V "Modify PCM"       2024-09-27 PDBE 
# 
_pdbx_chem_comp_synonyms.ordinal      1 
_pdbx_chem_comp_synonyms.comp_id      C8V 
_pdbx_chem_comp_synonyms.name         "OPEN FORM -  Zidebactam" 
_pdbx_chem_comp_synonyms.provenance   ? 
_pdbx_chem_comp_synonyms.type         ? 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            C8V 
_pdbx_chem_comp_pcm.modified_residue_id                SER 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               CAG 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   OG 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
