data_M5V
#

_chem_comp.id                                   M5V
_chem_comp.name                                 "4-[(1S,4S)-5-(3-chlorophenyl)-2,5-diazabicyclo[2.2.1]heptan-2-yl]-2-(pyridin-3-yl)pyrimidine-5-carbonitrile"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C21 H17 Cl N6"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2019-03-26
_chem_comp.pdbx_modified_date                   2019-12-06
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       388.853
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    M5V
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       6OCO
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
M5V  C2   C1   C   0  1  N  N  N  41.080  13.078  35.611  -1.458   1.346   1.437  C2   M5V   1  
M5V  C3   C2   C   0  1  N  N  S  42.098  14.251  35.817  -1.984   2.549   0.595  C3   M5V   2  
M5V  C4   C3   C   0  1  N  N  N  41.192  15.287  36.576  -3.526   2.261   0.657  C4   M5V   3  
M5V  C5   C4   C   0  1  N  N  S  39.999  15.191  35.561  -3.389   0.775   0.168  C5   M5V   4  
M5V  C6   C5   C   0  1  N  N  N  40.781  15.420  34.221  -2.544   1.002  -1.124  C6   M5V   5  
M5V  C8   C6   C   0  1  Y  N  N  42.959  14.533  33.467  -0.329   1.839  -0.969  C8   M5V   6  
M5V  C11  C7   C   0  1  Y  N  N  44.506  13.698  31.286   2.346   1.197  -1.275  C11  M5V   7  
M5V  C12  C8   C   0  1  Y  N  N  44.356  12.874  32.391   1.968   2.163  -0.359  C12  M5V   8  
M5V  C15  C9   C   0  1  Y  N  N  38.678  13.200  34.940  -1.741  -0.862   0.651  C15  M5V   9  
M5V  C17  C10  C   0  1  Y  N  N  36.695  13.668  33.754   0.224  -1.984   0.205  C17  M5V  10  
M5V  C19  C11  C   0  1  Y  N  N  37.340  11.452  33.890  -1.739  -3.025  -0.413  C19  M5V  11  
M5V  C21  C12  C   0  1  N  N  N  39.330  10.743  35.057  -3.891  -1.913   0.025  C21  M5V  12  
M5V  N22  N1   N   0  1  N  N  N  40.045   9.926  35.398  -5.026  -1.894  -0.023  N22  M5V  13  
M5V  C23  C13  C   0  1  Y  N  N  35.722  14.684  33.277   1.704  -2.019   0.269  C23  M5V  14  
M5V  C24  C14  C   0  1  Y  N  N  36.086  16.034  33.136   2.414  -0.959   0.833  C24  M5V  15  
M5V  C27  C15  C   0  1  Y  N  N  33.520  15.279  32.513   3.794  -3.099  -0.149  C27  M5V  16  
M5V  N1   N2   N   0  1  N  N  N  39.740  13.715  35.694  -2.403   0.238   1.158  N1   M5V  17  
M5V  N7   N3   N   0  1  N  N  N  42.174  15.016  34.534  -1.678   2.166  -0.820  N7   M5V  18  
M5V  C9   C16  C   0  1  Y  N  N  43.127  15.360  32.349   0.054   0.865  -1.883  C9   M5V  19  
M5V  C10  C17  C   0  1  Y  N  N  43.890  14.940  31.269   1.390   0.547  -2.033  C10  M5V  20  
M5V  CL1  CL1  CL  0  0  N  N  N  45.118  11.321  32.436   3.172   2.966   0.600  CL1  M5V  21  
M5V  C14  C18  C   0  1  Y  N  N  43.598  13.281  33.475   0.634   2.490  -0.209  C14  M5V  22  
M5V  N16  N4   N   0  1  Y  N  N  37.753  14.053  34.472  -0.416  -0.930   0.691  N16  M5V  23  
M5V  N18  N5   N   0  1  Y  N  N  36.492  12.380  33.469  -0.420  -3.010  -0.339  N18  M5V  24  
M5V  C20  C19  C   0  1  Y  N  N  38.471  11.812  34.648  -2.461  -1.937   0.085  C20  M5V  25  
M5V  N25  N6   N   0  1  Y  N  N  35.207  16.928  32.707   3.729  -0.989   0.891  N25  M5V  26  
M5V  C26  C20  C   0  1  Y  N  N  33.962  16.589  32.404   4.424  -2.010   0.424  C26  M5V  27  
M5V  C28  C21  C   0  1  Y  N  N  34.401  14.305  32.955   2.412  -3.118  -0.228  C28  M5V  28  
M5V  H1   H1   H   0  1  N  N  N  41.198  12.320  36.400  -0.451   1.073   1.120  H1   M5V  29  
M5V  H2   H2   H   0  1  N  N  N  41.225  12.608  34.627  -1.468   1.594   2.499  H2   M5V  30  
M5V  H3   H3   H   0  1  N  N  N  43.047  13.988  36.308  -1.661   3.539   0.916  H3   M5V  31  
M5V  H4   H4   H   0  1  N  N  N  41.636  16.292  36.623  -3.920   2.329   1.672  H4   M5V  32  
M5V  H5   H5   H   0  1  N  N  N  40.921  14.958  37.590  -4.092   2.878  -0.041  H5   M5V  33  
M5V  H6   H6   H   0  1  N  N  N  39.153  15.868  35.747  -4.315   0.211   0.058  H6   M5V  34  
M5V  H7   H7   H   0  1  N  N  N  40.740  16.478  33.922  -1.936   0.123  -1.338  H7   M5V  35  
M5V  H8   H8   H   0  1  N  N  N  40.366  14.795  33.416  -3.197   1.226  -1.968  H8   M5V  36  
M5V  H9   H9   H   0  1  N  N  N  45.099  13.374  30.444   3.390   0.943  -1.391  H9   M5V  37  
M5V  H10  H10  H   0  1  N  N  N  37.162  10.414  33.650  -2.252  -3.867  -0.854  H10  M5V  38  
M5V  H11  H11  H   0  1  N  N  N  37.091  16.346  33.379   1.880  -0.106   1.225  H11  M5V  39  
M5V  H12  H12  H   0  1  N  N  N  32.503  15.021  32.257   4.373  -3.930  -0.523  H12  M5V  40  
M5V  H13  H13  H   0  1  N  N  N  42.659  16.333  32.328  -0.692   0.357  -2.476  H13  M5V  41  
M5V  H14  H14  H   0  1  N  N  N  44.005  15.584  30.410   1.688  -0.209  -2.744  H14  M5V  42  
M5V  H15  H15  H   0  1  N  N  N  43.497  12.632  34.333   0.340   3.250   0.500  H15  M5V  43  
M5V  H16  H16  H   0  1  N  N  N  33.276  17.351  32.064   5.502  -1.992   0.488  H16  M5V  44  
M5V  H17  H17  H   0  1  N  N  N  34.083  13.277  33.051   1.894  -3.956  -0.671  H17  M5V  45  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
M5V  C10  C11  DOUB  Y  N   1  
M5V  C10  C9   SING  Y  N   2  
M5V  C11  C12  SING  Y  N   3  
M5V  C9   C8   DOUB  Y  N   4  
M5V  C12  CL1  SING  N  N   5  
M5V  C12  C14  DOUB  Y  N   6  
M5V  C26  C27  DOUB  Y  N   7  
M5V  C26  N25  SING  Y  N   8  
M5V  C27  C28  SING  Y  N   9  
M5V  N25  C24  DOUB  Y  N  10  
M5V  C28  C23  DOUB  Y  N  11  
M5V  C24  C23  SING  Y  N  12  
M5V  C23  C17  SING  N  N  13  
M5V  C8   C14  SING  Y  N  14  
M5V  C8   N7   SING  N  N  15  
M5V  N18  C17  DOUB  Y  N  16  
M5V  N18  C19  SING  Y  N  17  
M5V  C17  N16  SING  Y  N  18  
M5V  C19  C20  DOUB  Y  N  19  
M5V  C6   N7   SING  N  N  20  
M5V  C6   C5   SING  N  N  21  
M5V  N16  C15  DOUB  Y  N  22  
M5V  N7   C3   SING  N  N  23  
M5V  C20  C15  SING  Y  N  24  
M5V  C20  C21  SING  N  N  25  
M5V  C15  N1   SING  N  N  26  
M5V  C21  N22  TRIP  N  N  27  
M5V  C5   N1   SING  N  N  28  
M5V  C5   C4   SING  N  N  29  
M5V  C2   N1   SING  N  N  30  
M5V  C2   C3   SING  N  N  31  
M5V  C3   C4   SING  N  N  32  
M5V  C2   H1   SING  N  N  33  
M5V  C2   H2   SING  N  N  34  
M5V  C3   H3   SING  N  N  35  
M5V  C4   H4   SING  N  N  36  
M5V  C4   H5   SING  N  N  37  
M5V  C5   H6   SING  N  N  38  
M5V  C6   H7   SING  N  N  39  
M5V  C6   H8   SING  N  N  40  
M5V  C11  H9   SING  N  N  41  
M5V  C19  H10  SING  N  N  42  
M5V  C24  H11  SING  N  N  43  
M5V  C27  H12  SING  N  N  44  
M5V  C9   H13  SING  N  N  45  
M5V  C10  H14  SING  N  N  46  
M5V  C14  H15  SING  N  N  47  
M5V  C26  H16  SING  N  N  48  
M5V  C28  H17  SING  N  N  49  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
M5V  SMILES            ACDLabs               12.01  "C1N(C2CC1N(C2)c3cc(ccc3)Cl)c5nc(c4cnccc4)ncc5C#N"  
M5V  InChI             InChI                 1.03   "InChI=1S/C21H17ClN6/c22-16-4-1-5-17(7-16)27-12-19-8-18(27)13-28(19)21-15(9-23)11-25-20(26-21)14-3-2-6-24-10-14/h1-7,10-11,18-19H,8,12-13H2/t18-,19-/m0/s1"  
M5V  InChIKey          InChI                 1.03   LYMCCCUAFBZMES-OALUTQOASA-N  
M5V  SMILES_CANONICAL  CACTVS                3.385  "Clc1cccc(c1)N2C[C@@H]3C[C@H]2CN3c4nc(ncc4C#N)c5cccnc5"  
M5V  SMILES            CACTVS                3.385  "Clc1cccc(c1)N2C[CH]3C[CH]2CN3c4nc(ncc4C#N)c5cccnc5"  
M5V  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "c1cc(cc(c1)Cl)N2C[C@@H]3C[C@H]2CN3c4c(cnc(n4)c5cccnc5)C#N"  
M5V  SMILES            "OpenEye OEToolkits"  2.0.7  "c1cc(cc(c1)Cl)N2CC3CC2CN3c4c(cnc(n4)c5cccnc5)C#N"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
M5V  "SYSTEMATIC NAME"  ACDLabs               12.01  "4-[(1S,4S)-5-(3-chlorophenyl)-2,5-diazabicyclo[2.2.1]heptan-2-yl]-2-(pyridin-3-yl)pyrimidine-5-carbonitrile"  
M5V  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.7  "4-[(1~{S},4~{S})-5-(3-chlorophenyl)-2,5-diazabicyclo[2.2.1]heptan-2-yl]-2-pyridin-3-yl-pyrimidine-5-carbonitrile"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
M5V  "Create component"  2019-03-26  RCSB  
M5V  "Initial release"   2019-12-11  RCSB  
##
