data_P0V
#

_chem_comp.id                                   P0V
_chem_comp.name                                 "9-(5-{[(3R)-3-amino-3-carboxypropyl][3-(3-carbamoylphenyl)prop-2-yn-1-yl]amino}-5-deoxy-alpha-D-lyxofuranosyl)-9H-purin-6-amine"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C24 H28 N8 O6"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2019-07-22
_chem_comp.pdbx_modified_date                   2019-11-22
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       524.529
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    P0V
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       6PVS
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
P0V  C28   C1   C  0  1  Y  N  N   7.380   1.504   -8.040  -5.751  -2.000  -0.629  C28   P0V   1  
P0V  C29   C2   C  0  1  Y  N  N   8.282   2.580   -7.911  -6.674  -2.886  -0.076  C29   P0V   2  
P0V  C30   C3   C  0  1  Y  N  N   9.253   2.558   -6.926  -6.436  -3.443   1.182  C30   P0V   3  
P0V  C27   C4   C  0  1  Y  N  N   7.457   0.412   -7.199  -4.595  -1.677   0.079  C27   P0V   4  
P0V  C26   C5   C  0  1  N  N  N   6.438  -0.726   -7.403  -3.642  -0.767  -0.481  C26   P0V   5  
P0V  C19   C6   C  0  1  N  N  N   3.706  -2.669   -4.962  -1.430   3.321   0.163  C19   P0V   6  
P0V  C14   C7   C  0  1  N  N  S  -0.727  -4.156   -9.125   4.003   1.478  -0.600  C14   P0V   7  
P0V  C15   C8   C  0  1  N  N  N   2.239  -2.536   -8.458   0.395   1.698  -1.251  C15   P0V   8  
P0V  C13   C9   C  0  1  N  N  R   0.250  -4.066   -8.034   2.799   2.386  -0.970  C13   P0V   9  
P0V  C12   C10  C  0  1  N  N  R   0.807  -2.685   -8.007   1.613   1.635  -0.326  C12   P0V  10  
P0V  C6    C11  C  0  1  Y  N  N  -4.567  -1.126  -11.555   6.661  -3.186   0.876  C6    P0V  11  
P0V  C4    C12  C  0  1  Y  N  N  -4.737  -1.907   -9.354   6.959  -2.498  -1.307  C4    P0V  12  
P0V  N3    N1   N  0  1  Y  N  N  -3.475  -2.333   -9.343   5.918  -1.693  -1.267  N3    P0V  13  
P0V  C2    C13  C  0  1  Y  N  N  -2.703  -2.175  -10.431   5.188  -1.585  -0.162  C2    P0V  14  
P0V  C1    C14  C  0  1  Y  N  N  -3.259  -1.549  -11.581   5.542  -2.342   0.967  C1    P0V  15  
P0V  N9    N2   N  0  1  Y  N  N  -1.569  -2.424  -10.818   4.078  -0.863   0.199  N9    P0V  16  
P0V  C8    C15  C  0  1  Y  N  N  -1.172  -2.114  -11.942   3.788  -1.179   1.492  C8    P0V  17  
P0V  C10   C16  C  0  1  N  N  S  -0.561  -3.019  -10.019   3.342   0.078  -0.650  C10   P0V  18  
P0V  C18   C17  C  0  1  N  N  N   2.785  -3.161   -6.102  -1.169   1.875   0.589  C18   P0V  19  
P0V  C20   C18  C  0  1  N  N  R   3.066  -2.567   -3.591  -1.984   4.110   1.351  C20   P0V  20  
P0V  C24   C19  C  0  1  N  N  N   4.623  -2.776   -7.784  -1.880   0.913  -1.516  C24   P0V  21  
P0V  C25   C20  C  0  1  N  N  N   5.644  -1.617   -7.567  -2.860  -0.022  -0.941  C25   P0V  22  
P0V  C31   C21  C  0  1  Y  N  N   9.335   1.455   -6.067  -5.288  -3.118   1.878  C31   P0V  23  
P0V  C32   C22  C  0  1  Y  N  N   8.436   0.380   -6.203  -4.369  -2.241   1.336  C32   P0V  24  
P0V  C33   C23  C  0  1  N  N  N   8.107   3.748   -8.894  -7.904  -3.234  -0.820  C33   P0V  25  
P0V  C36   C24  C  0  1  N  N  N   4.368  -2.423   -2.675  -2.357   5.499   0.902  C36   P0V  26  
P0V  N16   N3   N  0  1  N  N  N   3.231  -2.412   -7.335  -0.760   1.087  -0.581  N16   P0V  27  
P0V  N17   N4   N  0  1  N  N  N  -5.107  -0.474  -12.733   7.054  -3.960   1.954  N17   P0V  28  
P0V  N21   N5   N  0  1  N  N  N   2.080  -3.362   -2.924  -0.962   4.194   2.403  N21   P0V  29  
P0V  N34   N6   N  0  1  N  N  N   6.813   4.436   -8.853  -8.795  -4.091  -0.285  N34   P0V  30  
P0V  N5    N7   N  0  1  Y  N  N  -5.275  -1.313  -10.436   7.330  -3.229  -0.272  N5    P0V  31  
P0V  N7    N8   N  0  1  Y  N  N  -2.194  -1.538  -12.543   4.647  -2.047   1.941  N7    P0V  32  
P0V  O11   O1   O  0  1  N  N  N  -0.005  -1.919   -9.038   2.013   0.272  -0.142  O11   P0V  33  
P0V  O22   O2   O  0  1  N  N  N   1.340  -5.019   -8.113   2.639   2.468  -2.387  O22   P0V  34  
P0V  O23   O3   O  0  1  N  N  N  -0.436  -5.286   -9.976   5.048   1.590  -1.568  O23   P0V  35  
P0V  O35   O4   O  0  1  N  N  N   8.962   4.070   -9.661  -8.110  -2.748  -1.915  O35   P0V  36  
P0V  O37   O5   O  0  1  N  N  N   4.557  -1.490   -1.852  -3.519   5.709   0.264  O37   P0V  37  
P0V  O38   O6   O  0  1  N  N  N   5.349  -3.243   -2.678  -1.610   6.424   1.116  O38   P0V  38  
P0V  H281  H1   H  0  0  N  N  N   6.619   1.535   -8.806  -5.929  -1.570  -1.603  H281  P0V  39  
P0V  H301  H2   H  0  0  N  N  N   9.941   3.384   -6.820  -7.150  -4.129   1.612  H301  P0V  40  
P0V  H192  H3   H  0  0  N  N  N   4.553  -3.367   -4.888  -0.498   3.776  -0.171  H192  P0V  41  
P0V  H191  H4   H  0  0  N  N  N   4.077  -1.670   -5.236  -2.154   3.335  -0.651  H191  P0V  42  
P0V  H141  H5   H  0  0  N  N  N  -1.753  -4.205   -8.732   4.372   1.703   0.401  H141  P0V  43  
P0V  H152  H6   H  0  0  N  N  N   2.505  -3.419   -9.057   0.171   2.739  -1.485  H152  P0V  44  
P0V  H151  H7   H  0  0  N  N  N   2.311  -1.634   -9.083   0.610   1.156  -2.172  H151  P0V  45  
P0V  H131  H8   H  0  0  N  N  N  -0.283  -4.231   -7.086   2.912   3.378  -0.533  H131  P0V  46  
P0V  H121  H9   H  0  0  N  N  N   0.673  -2.236   -7.012   1.369   2.084   0.637  H121  P0V  47  
P0V  H41   H10  H  0  1  N  N  N  -5.345  -2.042   -8.472   7.531  -2.563  -2.221  H41   P0V  48  
P0V  H81   H11  H  0  1  N  N  N  -0.187  -2.280  -12.352   2.966  -0.771   2.061  H81   P0V  49  
P0V  H101  H12  H  0  0  N  N  N   0.278  -3.264  -10.687   3.307  -0.288  -1.676  H101  P0V  50  
P0V  H182  H13  H  0  0  N  N  N   1.734  -2.932   -5.873  -0.375   1.854   1.336  H182  P0V  51  
P0V  H181  H14  H  0  0  N  N  N   2.900  -4.245   -6.248  -2.079   1.451   1.013  H181  P0V  52  
P0V  H201  H15  H  0  0  N  N  N   2.647  -1.550   -3.579  -2.868   3.606   1.742  H201  P0V  53  
P0V  H242  H16  H  0  0  N  N  N   4.594  -3.025   -8.855  -1.507   0.514  -2.459  H242  P0V  54  
P0V  H241  H17  H  0  0  N  N  N   4.959  -3.654   -7.213  -2.357   1.877  -1.694  H241  P0V  55  
P0V  H311  H18  H  0  0  N  N  N  10.091   1.429   -5.297  -5.109  -3.552   2.851  H311  P0V  56  
P0V  H321  H19  H  0  0  N  N  N   8.503  -0.468   -5.538  -3.474  -1.992   1.885  H321  P0V  57  
P0V  H172  H21  H  0  0  N  N  N  -6.055  -0.206  -12.561   7.826  -4.542   1.877  H172  P0V  58  
P0V  H171  H22  H  0  0  N  N  N  -4.563   0.339  -12.943   6.558  -3.920   2.786  H171  P0V  59  
P0V  H211  H23  H  0  0  N  N  N   1.905  -2.983   -2.015  -0.742   3.278   2.767  H211  P0V  60  
P0V  H212  H24  H  0  0  N  N  N   1.233  -3.358   -3.456  -0.133   4.658   2.066  H212  P0V  61  
P0V  H341  H26  H  0  0  N  N  N   6.630   5.195   -9.478  -8.631  -4.479   0.589  H341  P0V  62  
P0V  H342  H27  H  0  0  N  N  N   6.113   4.146   -8.200  -9.602  -4.319  -0.772  H342  P0V  63  
P0V  H221  H28  H  0  0  N  N  N   1.924  -4.895   -7.374   3.398   2.853  -2.846  H221  P0V  64  
P0V  H231  H29  H  0  0  N  N  N  -0.519  -6.089   -9.476   5.418   2.480  -1.646  H231  P0V  65  
P0V  H3    H30  H  0  1  N  N  N   5.394  -1.613   -1.420  -3.714   6.617  -0.005  H3    P0V  66  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
P0V  N17  C6    SING  N  N   1  
P0V  N7   C8    DOUB  Y  N   2  
P0V  N7   C1    SING  Y  N   3  
P0V  C8   N9    SING  Y  N   4  
P0V  C1   C6    DOUB  Y  N   5  
P0V  C1   C2    SING  Y  N   6  
P0V  C6   N5    SING  Y  N   7  
P0V  N9   C2    SING  Y  N   8  
P0V  N9   C10   SING  N  N   9  
P0V  N5   C4    DOUB  Y  N  10  
P0V  C2   N3    DOUB  Y  N  11  
P0V  C10  C14   SING  N  N  12  
P0V  C10  O11   SING  N  N  13  
P0V  O23  C14   SING  N  N  14  
P0V  O35  C33   DOUB  N  N  15  
P0V  C4   N3    SING  Y  N  16  
P0V  C14  C13   SING  N  N  17  
P0V  O11  C12   SING  N  N  18  
P0V  C33  N34   SING  N  N  19  
P0V  C33  C29   SING  N  N  20  
P0V  C15  C12   SING  N  N  21  
P0V  C15  N16   SING  N  N  22  
P0V  O22  C13   SING  N  N  23  
P0V  C28  C29   DOUB  Y  N  24  
P0V  C28  C27   SING  Y  N  25  
P0V  C13  C12   SING  N  N  26  
P0V  C29  C30   SING  Y  N  27  
P0V  C24  C25   SING  N  N  28  
P0V  C24  N16   SING  N  N  29  
P0V  C25  C26   TRIP  N  N  30  
P0V  C26  C27   SING  N  N  31  
P0V  N16  C18   SING  N  N  32  
P0V  C27  C32   DOUB  Y  N  33  
P0V  C30  C31   DOUB  Y  N  34  
P0V  C32  C31   SING  Y  N  35  
P0V  C18  C19   SING  N  N  36  
P0V  C19  C20   SING  N  N  37  
P0V  C20  N21   SING  N  N  38  
P0V  C20  C36   SING  N  N  39  
P0V  O38  C36   DOUB  N  N  40  
P0V  C36  O37   SING  N  N  41  
P0V  C28  H281  SING  N  N  42  
P0V  C30  H301  SING  N  N  43  
P0V  C19  H192  SING  N  N  44  
P0V  C19  H191  SING  N  N  45  
P0V  C14  H141  SING  N  N  46  
P0V  C15  H152  SING  N  N  47  
P0V  C15  H151  SING  N  N  48  
P0V  C13  H131  SING  N  N  49  
P0V  C12  H121  SING  N  N  50  
P0V  C4   H41   SING  N  N  51  
P0V  C8   H81   SING  N  N  52  
P0V  C10  H101  SING  N  N  53  
P0V  C18  H182  SING  N  N  54  
P0V  C18  H181  SING  N  N  55  
P0V  C20  H201  SING  N  N  56  
P0V  C24  H242  SING  N  N  57  
P0V  C24  H241  SING  N  N  58  
P0V  C31  H311  SING  N  N  59  
P0V  C32  H321  SING  N  N  60  
P0V  N17  H172  SING  N  N  61  
P0V  N17  H171  SING  N  N  62  
P0V  N21  H211  SING  N  N  63  
P0V  N21  H212  SING  N  N  64  
P0V  N34  H341  SING  N  N  65  
P0V  N34  H342  SING  N  N  66  
P0V  O22  H221  SING  N  N  67  
P0V  O23  H231  SING  N  N  68  
P0V  O37  H3    SING  N  N  69  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
P0V  SMILES            ACDLabs               12.01  "c1c(cccc1C#CCN(CC4C(C(C(n3c2ncnc(c2nc3)N)O4)O)O)CCC(N)C(O)=O)C(N)=O"  
P0V  InChI             InChI                 1.03   "InChI=1S/C24H28N8O6/c25-15(24(36)37)6-8-31(7-2-4-13-3-1-5-14(9-13)21(27)35)10-16-18(33)19(34)23(38-16)32-12-30-17-20(26)28-11-29-22(17)32/h1,3,5,9,11-12,15-16,18-19,23,33-34H,6-8,10,25H2,(H2,27,35)(H,36,37)(H2,26,28,29)/t15-,16-,18+,19+,23+/m1/s1"  
P0V  InChIKey          InChI                 1.03   BWPXKNJHQXYKGO-VUZQMMKOSA-N  
P0V  SMILES_CANONICAL  CACTVS                3.385  "N[C@H](CCN(CC#Cc1cccc(c1)C(N)=O)C[C@H]2O[C@@H]([C@@H](O)[C@H]2O)n3cnc4c(N)ncnc34)C(O)=O"  
P0V  SMILES            CACTVS                3.385  "N[CH](CCN(CC#Cc1cccc(c1)C(N)=O)C[CH]2O[CH]([CH](O)[CH]2O)n3cnc4c(N)ncnc34)C(O)=O"  
P0V  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "c1cc(cc(c1)C(=O)N)C#CCN(CC[C@H](C(=O)O)N)C[C@@H]2[C@@H]([C@@H]([C@H](O2)n3cnc4c3ncnc4N)O)O"  
P0V  SMILES            "OpenEye OEToolkits"  2.0.7  "c1cc(cc(c1)C(=O)N)C#CCN(CCC(C(=O)O)N)CC2C(C(C(O2)n3cnc4c3ncnc4N)O)O"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
P0V  "SYSTEMATIC NAME"  ACDLabs               12.01  "9-(5-{[(3R)-3-amino-3-carboxypropyl][3-(3-carbamoylphenyl)prop-2-yn-1-yl]amino}-5-deoxy-alpha-D-lyxofuranosyl)-9H-purin-6-amine"  
P0V  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.7  "(2~{R})-4-[3-(3-aminocarbonylphenyl)prop-2-ynyl-[[(2~{R},3~{R},4~{S},5~{S})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl]amino]-2-azanyl-butanoic acid"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
P0V  "Create component"  2019-07-22  RCSB  
P0V  "Initial release"   2019-11-27  RCSB  
##
