data_XYV
#

_chem_comp.id                                   XYV
_chem_comp.name                                 prostratin
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C22 H30 O6"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        "12-deoxyphorbol-13-acetate; (1aR,1bS,4aR,7aS,7bR,8R,9aS)-4a,7b-dihydroxy-3-(hydroxymethyl)-1,1,6,8-tetramethyl-5-oxo-1,1a,1b,4,4a,5,7a,7b,8,9-decahydro-9aH-cyclopropa[3,4]benzo[1,2-e]azulen-9a-yl acetate"
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2021-01-20
_chem_comp.pdbx_modified_date                   2022-04-29
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       390.470
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    XYV
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       7LCB
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
XYV  C10  C1   C  0  1  N  N  R  -3.871   0.728   1.010  -0.240  -0.340   0.666  C10  XYV   1  
XYV  C13  C2   C  0  1  N  N  N  -2.343  -2.813   1.011  -3.424  -2.081   0.239  C13  XYV   2  
XYV  C17  C3   C  0  1  N  N  N  -3.648  -1.178   3.965  -2.800   1.421  -0.596  C17  XYV   3  
XYV  C20  C4   C  0  1  N  N  N  -3.143   0.607   5.797  -2.489   3.546   0.796  C20  XYV   4  
XYV  C26  C5   C  0  1  N  N  N  -4.509   4.810  -0.300   4.727  -0.570   0.502  C26  XYV   5  
XYV  C28  C6   C  0  1  N  N  N  -4.504   6.311  -0.669   6.080  -0.259   1.087  C28  XYV   6  
XYV  C01  C7   C  0  1  N  N  N  -4.048   0.210  -1.522   0.400  -2.724   1.206  C01  XYV   7  
XYV  C02  C8   C  0  1  N  N  R  -4.819   0.440  -0.196   0.547  -1.549   0.212  C02  XYV   8  
XYV  C03  C9   C  0  1  N  N  N  -5.888   1.606  -0.419   2.059  -1.338   0.163  C03  XYV   9  
XYV  C04  C10  C  0  1  N  N  S  -5.660   2.868   0.398   2.533   0.035  -0.225  C04  XYV  10  
XYV  C05  C11  C  0  1  N  N  R  -5.461   2.614   1.903   1.533   1.168  -0.362  C05  XYV  11  
XYV  C06  C12  C  0  1  N  N  N  -6.882   2.762   1.362   2.255   0.617  -1.606  C06  XYV  12  
XYV  C07  C13  C  0  1  N  N  N  -7.580   4.092   1.755   3.354   1.501  -2.213  C07  XYV  13  
XYV  C08  C14  C  0  1  N  N  N  -7.738   1.471   1.432   1.501  -0.248  -2.608  C08  XYV  14  
XYV  C09  C15  C  0  1  N  N  S  -4.722   1.289   2.200   0.041   0.876  -0.236  C09  XYV  15  
XYV  C11  C16  C  0  1  N  N  S  -3.029  -0.535   1.619  -1.748  -0.520   0.714  C11  XYV  16  
XYV  C12  C17  C  0  1  N  N  N  -2.278  -1.384   0.567  -2.278  -1.917   0.907  C12  XYV  17  
XYV  C14  C18  C  0  1  N  N  N  -3.297  -2.928   2.190  -3.793  -0.860  -0.475  C14  XYV  18  
XYV  C16  C19  C  0  1  N  N  R  -3.861  -1.533   2.518  -2.508  -0.038  -0.516  C16  XYV  19  
XYV  C18  C20  C  0  1  N  N  N  -3.655   0.276   4.381  -1.900   2.309   0.178  C18  XYV  20  
XYV  C19  C21  C  0  1  N  N  N  -3.890   1.458   3.486  -0.646   2.080   0.347  C19  XYV  21  
XYV  C23  C22  C  0  1  N  N  N  -1.828  -4.022   0.205  -4.222  -3.360   0.231  C23  XYV  22  
XYV  O15  O1   O  0  1  N  N  N  -3.577  -3.957   2.728  -4.867  -0.554  -0.942  O15  XYV  23  
XYV  O21  O2   O  0  1  N  N  N  -1.818   0.126   5.870  -1.467   4.262   1.493  O21  XYV  24  
XYV  O22  O3   O  0  1  N  N  N  -5.245  -1.604   2.220  -1.841  -0.468  -1.707  O22  XYV  25  
XYV  O24  O4   O  0  1  N  N  N  -2.892   1.661   0.616   0.184   0.014   1.990  O24  XYV  26  
XYV  O25  O5   O  0  1  N  N  N  -5.751   4.161  -0.170   3.822   0.409   0.347  O25  XYV  27  
XYV  O27  O6   O  0  1  N  N  N  -3.483   4.232  -0.128   4.456  -1.701   0.172  O27  XYV  28  
XYV  H2   H2   H  0  1  N  N  N  -4.442  -1.679   4.538  -2.766   1.723  -1.642  H2   XYV  29  
XYV  H3   H3   H  0  1  N  N  N  -3.162   1.694   5.963  -2.907   4.179   0.014  H3   XYV  30  
XYV  H4   H4   H  0  1  N  N  N  -3.769   0.110   6.553  -3.276   3.263   1.495  H4   XYV  31  
XYV  H5   H5   H  0  1  N  N  N  -3.466   6.671  -0.727   6.042  -0.372   2.170  H5   XYV  32  
XYV  H6   H6   H  0  1  N  N  N  -4.996   6.451  -1.643   6.820  -0.946   0.676  H6   XYV  33  
XYV  H7   H7   H  0  1  N  N  N  -5.047   6.879   0.101   6.357   0.765   0.837  H7   XYV  34  
XYV  H8   H8   H  0  1  N  N  N  -3.308  -0.592  -1.382  -0.550  -3.229   1.033  H8   XYV  35  
XYV  H9   H9   H  0  1  N  N  N  -4.756  -0.079  -2.312   1.218  -3.429   1.058  H9   XYV  36  
XYV  H10  H10  H  0  1  N  N  N  -3.533   1.138  -1.812   0.429  -2.343   2.226  H10  XYV  37  
XYV  H11  H11  H  0  1  N  N  N  -5.380  -0.479   0.031   0.192  -1.888  -0.764  H11  XYV  38  
XYV  H12  H12  H  0  1  N  N  N  -5.870   1.883  -1.483   2.461  -1.575   1.162  H12  XYV  39  
XYV  H13  H13  H  0  1  N  N  N  -6.881   1.210  -0.160   2.490  -2.079  -0.523  H13  XYV  40  
XYV  H14  H14  H  0  1  N  N  N  -5.090   3.481   2.469   1.839   2.157  -0.012  H14  XYV  41  
XYV  H15  H15  H  0  1  N  N  N  -8.420   3.880   2.433   3.801   0.992  -3.067  H15  XYV  42  
XYV  H16  H16  H  0  1  N  N  N  -6.858   4.750   2.261   2.921   2.446  -2.540  H16  XYV  43  
XYV  H17  H17  H  0  1  N  N  N  -7.957   4.590   0.849   4.122   1.693  -1.463  H17  XYV  44  
XYV  H18  H18  H  0  1  N  N  N  -8.544   1.604   2.169   1.130  -1.143  -2.108  H18  XYV  45  
XYV  H19  H19  H  0  1  N  N  N  -8.175   1.267   0.443   0.661   0.315  -3.014  H19  XYV  46  
XYV  H20  H20  H  0  1  N  N  N  -7.102   0.625   1.733   2.172  -0.535  -3.418  H20  XYV  47  
XYV  H21  H21  H  0  1  N  N  N  -5.494   0.536   2.416  -0.359   0.726  -1.214  H21  XYV  48  
XYV  H22  H22  H  0  1  N  N  N  -2.263  -0.095   2.274  -2.101   0.078   1.569  H22  XYV  49  
XYV  H23  H23  H  0  1  N  N  N  -1.795  -1.014  -0.325  -1.910  -2.681   1.571  H23  XYV  50  
XYV  H25  H25  H  0  1  N  N  N  -3.478   2.423   3.742  -0.054   2.767   0.920  H25  XYV  51  
XYV  H27  H27  H  0  1  N  N  N  -2.006  -4.946   0.775  -5.110  -3.230  -0.387  H27  XYV  52  
XYV  H28  H28  H  0  1  N  N  N  -2.360  -4.075  -0.756  -3.612  -4.167  -0.175  H28  XYV  53  
XYV  H29  H29  H  0  1  N  N  N  -0.750  -3.907   0.021  -4.522  -3.608   1.249  H29  XYV  54  
XYV  H30  H30  H  0  1  N  N  N  -1.461   0.310   6.731  -1.776   5.074   1.918  H30  XYV  55  
XYV  H31  H31  H  0  1  N  N  N  -5.522  -2.513   2.215  -2.278  -0.191  -2.524  H31  XYV  56  
XYV  H32  H32  H  0  1  N  N  N  -3.309   2.487   0.401  -0.024  -0.650   2.661  H32  XYV  57  
XYV  H1   H1   H  0  1  N  N  N  -2.670  -1.590   4.255  -3.819   1.581  -0.235  H1   XYV  58  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
XYV  C01  C02  SING  N  N   1  
XYV  C28  C26  SING  N  N   2  
XYV  C03  C02  SING  N  N   3  
XYV  C03  C04  SING  N  N   4  
XYV  C26  O25  SING  N  N   5  
XYV  C26  O27  DOUB  N  N   6  
XYV  C02  C10  SING  N  N   7  
XYV  O25  C04  SING  N  N   8  
XYV  C23  C13  SING  N  N   9  
XYV  C04  C06  SING  N  N  10  
XYV  C04  C05  SING  N  N  11  
XYV  C12  C13  DOUB  N  N  12  
XYV  C12  C11  SING  N  N  13  
XYV  O24  C10  SING  N  N  14  
XYV  C10  C11  SING  N  N  15  
XYV  C10  C09  SING  N  N  16  
XYV  C13  C14  SING  N  N  17  
XYV  C06  C08  SING  N  N  18  
XYV  C06  C07  SING  N  N  19  
XYV  C06  C05  SING  N  N  20  
XYV  C11  C16  SING  N  N  21  
XYV  C05  C09  SING  N  N  22  
XYV  C14  C16  SING  N  N  23  
XYV  C14  O15  DOUB  N  N  24  
XYV  C09  C19  SING  N  N  25  
XYV  O22  C16  SING  N  N  26  
XYV  C16  C17  SING  N  N  27  
XYV  C19  C18  DOUB  N  N  28  
XYV  C17  C18  SING  N  N  29  
XYV  C18  C20  SING  N  N  30  
XYV  C20  O21  SING  N  N  31  
XYV  C17  H2   SING  N  N  32  
XYV  C20  H3   SING  N  N  33  
XYV  C20  H4   SING  N  N  34  
XYV  C28  H5   SING  N  N  35  
XYV  C28  H6   SING  N  N  36  
XYV  C28  H7   SING  N  N  37  
XYV  C01  H8   SING  N  N  38  
XYV  C01  H9   SING  N  N  39  
XYV  C01  H10  SING  N  N  40  
XYV  C02  H11  SING  N  N  41  
XYV  C03  H12  SING  N  N  42  
XYV  C03  H13  SING  N  N  43  
XYV  C05  H14  SING  N  N  44  
XYV  C07  H15  SING  N  N  45  
XYV  C07  H16  SING  N  N  46  
XYV  C07  H17  SING  N  N  47  
XYV  C08  H18  SING  N  N  48  
XYV  C08  H19  SING  N  N  49  
XYV  C08  H20  SING  N  N  50  
XYV  C09  H21  SING  N  N  51  
XYV  C11  H22  SING  N  N  52  
XYV  C12  H23  SING  N  N  53  
XYV  C19  H25  SING  N  N  54  
XYV  C23  H27  SING  N  N  55  
XYV  C23  H28  SING  N  N  56  
XYV  C23  H29  SING  N  N  57  
XYV  O21  H30  SING  N  N  58  
XYV  O22  H31  SING  N  N  59  
XYV  O24  H32  SING  N  N  60  
XYV  C17  H1   SING  N  N  61  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
XYV  SMILES            ACDLabs               12.01  "C12(C4C(CC(CO)=CC1C3C(CC2C)(C3(C)C)OC(=O)C)(C(C(=C4)C)=O)O)O"  
XYV  InChI             InChI                 1.03   "InChI=1S/C22H30O6/c1-11-6-16-20(26,18(11)25)9-14(10-23)7-15-17-19(4,5)21(17,28-13(3)24)8-12(2)22(15,16)27/h6-7,12,15-17,23,26-27H,8-10H2,1-5H3/t12-,15+,16-,17-,20-,21+,22-/m1/s1"  
XYV  InChIKey          InChI                 1.03   BOJKFRKNLSCGHY-HXGSDTCMSA-N  
XYV  SMILES_CANONICAL  CACTVS                3.385  "C[C@@H]1C[C@]2(OC(C)=O)[C@H]([C@@H]3C=C(CO)C[C@@]4(O)[C@@H](C=C(C)C4=O)[C@@]13O)C2(C)C"  
XYV  SMILES            CACTVS                3.385  "C[CH]1C[C]2(OC(C)=O)[CH]([CH]3C=C(CO)C[C]4(O)[CH](C=C(C)C4=O)[C]13O)C2(C)C"  
XYV  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "C[C@@H]1C[C@@]2([C@@H](C2(C)C)[C@H]3[C@]1([C@@H]4C=C(C(=O)[C@]4(CC(=C3)CO)O)C)O)OC(=O)C"  
XYV  SMILES            "OpenEye OEToolkits"  2.0.7  "CC1CC2(C(C2(C)C)C3C1(C4C=C(C(=O)C4(CC(=C3)CO)O)C)O)OC(=O)C"  
#
_pdbx_chem_comp_identifier.comp_id          XYV
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          ACDLabs
_pdbx_chem_comp_identifier.program_version  12.01
_pdbx_chem_comp_identifier.identifier       "(1aR,1bS,4aR,7aS,7bR,8R,9aS)-4a,7b-dihydroxy-3-(hydroxymethyl)-1,1,6,8-tetramethyl-5-oxo-1,1a,1b,4,4a,5,7a,7b,8,9-decahydro-9aH-cyclopropa[3,4]benzo[1,2-e]azulen-9a-yl acetate"
#   #
loop_
_pdbx_chem_comp_synonyms.ordinal
_pdbx_chem_comp_synonyms.comp_id
_pdbx_chem_comp_synonyms.name
_pdbx_chem_comp_synonyms.provenance
_pdbx_chem_comp_synonyms.type
1  XYV  12-deoxyphorbol-13-acetate                                                                                                                                                         PDB  ?  
2  XYV  "(1aR,1bS,4aR,7aS,7bR,8R,9aS)-4a,7b-dihydroxy-3-(hydroxymethyl)-1,1,6,8-tetramethyl-5-oxo-1,1a,1b,4,4a,5,7a,7b,8,9-decahydro-9aH-cyclopropa[3,4]benzo[1,2-e]azulen-9a-yl acetate"  PDB  ?  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
XYV  "Create component"  2021-01-20  RCSB  
XYV  "Modify synonyms"   2021-03-13  RCSB  
XYV  "Initial release"   2022-05-04  RCSB  
##
