data_APW
#

_chem_comp.id                                   APW
_chem_comp.name                                 "{5'-O-[(R)-{[(S)-AMINO(HYDROXY-KAPPAO)PHOSPHORYL]OXY}(HYDROXY-KAPPAO)PHOSPHORYL]ADENOSINATO(2-)}MAGNESIUM"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C10 H14 Mg N6 O9 P2"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        "MAGNESIUM-5'-ADENYLY-BETA-AMIDO-DIPHOSPHATE"
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2006-02-19
_chem_comp.pdbx_modified_date                   2020-06-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       448.505
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    APW
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       ?
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       ?
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
APW  MG      MG    MG  0  0  N  N  N  29.717  29.386  18.759  -5.845  -0.950   0.038  MG      APW   1  
APW  O2A     O2A   O   0  1  N  N  N  28.749  31.125  19.304  -4.103  -1.713   0.039  O2A     APW   2  
APW  PA      PA    P   0  1  N  N  R  29.072  31.992  20.626  -3.273  -0.302  -0.087  PA      APW   3  
APW  O1A     O1A   O   0  1  N  N  N  28.872  33.540  20.320  -3.133   0.318   1.250  O1A     APW   4  
APW  O3A     O3A   O   0  1  N  N  N  30.541  31.675  21.324  -4.107   0.677  -1.058  O3A     APW   5  
APW  PB      PB    P   0  1  N  N  S  31.542  30.367  21.265  -5.133   1.595  -0.222  PB      APW   6  
APW  O1B     O1B   O   0  1  N  N  N  32.137  30.159  22.606  -5.318   2.893  -0.909  O1B     APW   7  
APW  O2B     O2B   O   0  1  N  N  N  30.561  29.366  20.662  -6.568   0.800  -0.141  O2B     APW   8  
APW  N3B     N3B   N   0  1  N  N  N  32.772  30.789  20.108  -4.534   1.851   1.329  N3B     APW   9  
APW  "O5'"   O5*   O   0  1  N  N  N  27.989  31.483  21.700  -1.816  -0.580  -0.714  "O5'"   APW  10  
APW  "C5'"   C5*   C   0  1  N  N  N  27.945  32.109  22.975  -1.100  -1.368   0.239  "C5'"   APW  11  
APW  "C4'"   C4*   C   0  1  N  N  R  26.496  32.415  23.266   0.301  -1.669  -0.298  "C4'"   APW  12  
APW  "C3'"   C3*   C   0  1  N  N  S  26.364  33.211  24.545   1.080  -2.560   0.694  "C3'"   APW  13  
APW  "O3'"   O3*   O   0  1  N  N  N  26.605  34.593  24.300   1.020  -3.930   0.290  "O3'"   APW  14  
APW  "C2'"   C2*   C   0  1  N  N  R  24.934  32.914  24.931   2.532  -2.033   0.614  "C2'"   APW  15  
APW  "O2'"   O2*   O   0  1  N  N  N  24.034  33.738  24.188   3.414  -3.062   0.160  "O2'"   APW  16  
APW  "C1'"   C1*   C   0  1  N  N  R  24.772  31.454  24.525   2.455  -0.884  -0.416  "C1'"   APW  17  
APW  "O4'"   O4*   O   0  1  N  N  N  25.717  31.226  23.468   1.076  -0.454  -0.391  "O4'"   APW  18  
APW  N9      N9    N   0  1  Y  N  N  25.131  30.642  25.709   3.339   0.215  -0.020  N9      APW  19  
APW  C4      C4    C   0  1  Y  N  N  24.567  30.740  26.918   4.673   0.332  -0.320  C4      APW  20  
APW  C5      C5    C   0  1  Y  N  N  25.249  29.764  27.776   5.098   1.535   0.270  C5      APW  21  
APW  N7      N7    N   0  1  Y  N  N  26.168  29.151  27.009   4.019   2.084   0.879  N7      APW  22  
APW  C8      C8    C   0  1  Y  N  N  26.088  29.696  25.766   2.987   1.309   0.713  C8      APW  23  
APW  N3      N3    N   0  1  Y  N  N  23.579  31.490  27.452   5.552  -0.404  -0.990  N3      APW  24  
APW  C2      C2    C   0  1  Y  N  N  23.229  31.339  28.745   6.804  -0.014  -1.108  C2      APW  25  
APW  N1      N1    N   0  1  Y  N  N  23.806  30.467  29.590   7.248   1.111  -0.577  N1      APW  26  
APW  C6      C6    C   0  1  Y  N  N  24.805  29.654  29.182   6.442   1.912   0.111  C6      APW  27  
APW  N6      N6    N   0  1  N  N  N  25.400  28.773  30.025   6.917   3.089   0.664  N6      APW  28  
APW  H3B1    1H3B  H   0  0  N  N  N  33.186  31.662  20.366  -3.718   2.436   1.232  H3B1    APW  29  
APW  H3B2    2H3B  H   0  0  N  N  N  32.362  30.870  19.200  -5.226   2.398   1.821  H3B2    APW  30  
APW  "H5'1"  1H5*  H   0  0  N  N  N  28.548  33.029  22.981  -1.632  -2.303   0.411  "H5'1"  APW  31  
APW  "H5'2"  2H5*  H   0  0  N  N  N  28.355  31.438  23.744  -1.019  -0.818   1.177  "H5'2"  APW  32  
APW  "H4'"   H4*   H   0  1  N  N  N  26.132  32.972  22.390   0.236  -2.153  -1.273  "H4'"   APW  33  
APW  "H3'"   H3*   H   0  1  N  N  N  27.082  32.954  25.338   0.685  -2.443   1.703  "H3'"   APW  34  
APW  H2      H2    H   0  1  N  N  N  26.659  35.057  25.127   1.522  -4.436   0.944  H2      APW  35  
APW  H1      H1    H   0  1  N  N  N  24.720  33.102  25.993   2.855  -1.655   1.583  H1      APW  36  
APW  "H2'"   H2*   H   0  1  N  N  N  23.264  33.921  24.714   3.371  -3.774   0.813  "H2'"   APW  37  
APW  "H1'"   H1*   H   0  1  N  N  N  23.755  31.201  24.191   2.721  -1.246  -1.409  "H1'"   APW  38  
APW  H8      H8    H   0  1  N  N  N  26.711  29.408  24.932   1.997   1.505   1.099  H8      APW  39  
APW  H3      H3    H   0  1  N  N  N  22.432  31.960  29.127   7.493  -0.636  -1.660  H3      APW  40  
APW  HN61    1HN6  H   0  0  N  N  N  26.280  29.141  30.325   7.848   3.337   0.551  HN61    APW  41  
APW  HN62    2HN6  H   0  0  N  N  N  25.546  27.905  29.551   6.318   3.668   1.161  HN62    APW  42  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
APW  MG     O2A     SING  N  N   1  
APW  MG     O2B     SING  N  N   2  
APW  O2A    PA      SING  N  N   3  
APW  PA     O1A     DOUB  N  N   4  
APW  PA     O3A     SING  N  N   5  
APW  PA     "O5'"   SING  N  N   6  
APW  O3A    PB      SING  N  N   7  
APW  PB     O1B     DOUB  N  N   8  
APW  PB     O2B     SING  N  N   9  
APW  PB     N3B     SING  N  N  10  
APW  N3B    H3B1    SING  N  N  11  
APW  N3B    H3B2    SING  N  N  12  
APW  "O5'"  "C5'"   SING  N  N  13  
APW  "C5'"  "C4'"   SING  N  N  14  
APW  "C5'"  "H5'1"  SING  N  N  15  
APW  "C5'"  "H5'2"  SING  N  N  16  
APW  "C4'"  "C3'"   SING  N  N  17  
APW  "C4'"  "O4'"   SING  N  N  18  
APW  "C4'"  "H4'"   SING  N  N  19  
APW  "C3'"  "O3'"   SING  N  N  20  
APW  "C3'"  "C2'"   SING  N  N  21  
APW  "C3'"  "H3'"   SING  N  N  22  
APW  "O3'"  H2      SING  N  N  23  
APW  "C2'"  "O2'"   SING  N  N  24  
APW  "C2'"  "C1'"   SING  N  N  25  
APW  "C2'"  H1      SING  N  N  26  
APW  "O2'"  "H2'"   SING  N  N  27  
APW  "C1'"  "O4'"   SING  N  N  28  
APW  "C1'"  N9      SING  N  N  29  
APW  "C1'"  "H1'"   SING  N  N  30  
APW  N9     C4      SING  Y  N  31  
APW  N9     C8      SING  Y  N  32  
APW  C4     C5      SING  Y  N  33  
APW  C4     N3      DOUB  Y  N  34  
APW  C5     N7      SING  Y  N  35  
APW  C5     C6      DOUB  Y  N  36  
APW  N7     C8      DOUB  Y  N  37  
APW  C8     H8      SING  N  N  38  
APW  N3     C2      SING  Y  N  39  
APW  C2     N1      DOUB  Y  N  40  
APW  C2     H3      SING  N  N  41  
APW  N1     C6      SING  Y  N  42  
APW  C6     N6      SING  N  N  43  
APW  N6     HN61    SING  N  N  44  
APW  N6     HN62    SING  N  N  45  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
APW  SMILES            ACDLabs               10.04  "O=P4(O[Mg]OP(=O)(OCC3OC(n1c2ncnc(N)c2nc1)C(O)C3O)O4)N"  
APW  SMILES_CANONICAL  CACTVS                3.341  "Nc1ncnc2n(cnc12)[C@@H]3O[C@H](CO[P@]4(=O)O[Mg]O[P@](N)(=O)O4)[C@@H](O)[C@H]3O"  
APW  SMILES            CACTVS                3.341  "Nc1ncnc2n(cnc12)[CH]3O[CH](CO[P]4(=O)O[Mg]O[P](N)(=O)O4)[CH](O)[CH]3O"  
APW  SMILES_CANONICAL  "OpenEye OEToolkits"  1.5.0  "c1nc(c2c(n1)n(cn2)[C@H]3[C@@H]([C@@H]([C@H](O3)CO[P@]4(=O)O[Mg]O[P@](=O)(O4)N)O)O)N"  
APW  SMILES            "OpenEye OEToolkits"  1.5.0  "c1nc(c2c(n1)n(cn2)C3C(C(C(O3)COP4(=O)O[Mg]OP(=O)(O4)N)O)O)N"  
APW  InChI             InChI                 1.03   "InChI=1S/C10H16N6O9P2.Mg/c11-8-5-9(14-2-13-8)16(3-15-5)10-7(18)6(17)4(24-10)1-23-27(21,22)25-26(12,19)20;/h2-4,6-7,10,17-18H,1H2,(H,21,22)(H2,11,13,14)(H3,12,19,20);/q;+2/p-2/t4-,6-,7-,10-;/m1./s1"  
APW  InChIKey          InChI                 1.03   XFWUVFOBMRZZRT-MCDZGGTQSA-L  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
APW  "SYSTEMATIC NAME"  ACDLabs               10.04  "{5'-O-[(R)-{[(S)-amino(hydroxy-kappaO)phosphoryl]oxy}(hydroxy-kappaO)phosphoryl]adenosinato(2-)}magnesium"  
APW  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.5.0  "(2R,3S,4R,5R)-2-[[(2R,4S)-4-amino-2,4-dioxo-1,3,5-trioxa-2$l^{5},4$l^{5}-diphospha-6$l^{2}-magnesacyclohex-2-yl]oxymethyl]-5-(6-aminopurin-9-yl)oxolane-3,4-diol"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
APW  "Create component"   2006-02-19  RCSB  
APW  "Modify descriptor"  2011-06-04  RCSB  
APW  "Modify synonyms"    2020-06-05  PDBE  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     APW
_pdbx_chem_comp_synonyms.name        "MAGNESIUM-5'-ADENYLY-BETA-AMIDO-DIPHOSPHATE"
_pdbx_chem_comp_synonyms.provenance  ?
_pdbx_chem_comp_synonyms.type        ?
##
