data_Y2W
# 
_chem_comp.id                                    Y2W 
_chem_comp.name                                  "[(1~{S},2~{R},3~{R},4~{S},6~{R})-6-azanyl-2,3,4-tris(oxidanyl)cyclohexyl]methanesulfonic acid" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C7 H15 N O6 S" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-11-16 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        241.262 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     Y2W 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8R56 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
Y2W C5  C1  C 0 1 N N R N N N 14.731 5.795 55.312 -0.618 0.938  -0.412 C5  Y2W 1  
Y2W C4  C2  C 0 1 N N R N N N 15.753 4.730 54.948 -2.134 0.820  -0.244 C4  Y2W 2  
Y2W C3  C3  C 0 1 N N S N N N 15.723 4.439 53.454 -2.457 -0.381 0.648  C3  Y2W 3  
Y2W C6  C4  C 0 1 N N S N N N 13.299 5.286 55.110 -0.076 -0.338 -1.059 C6  Y2W 4  
Y2W C7  C5  C 0 1 N N N N N N 12.249 6.388 55.124 1.440  -0.221 -1.227 C7  Y2W 5  
Y2W C2  C6  C 0 1 N N N N N N 14.316 4.512 52.895 -1.915 -1.657 0.001  C2  Y2W 6  
Y2W C1  C7  C 0 1 N N R N N N 13.149 4.405 53.864 -0.398 -1.539 -0.167 C1  Y2W 7  
Y2W N1  N1  N 0 1 N N N N N N 12.989 2.978 54.286 0.122  -2.764 -0.788 N1  Y2W 8  
Y2W O1  O1  O 0 1 N N N N N N 16.263 3.126 53.238 -3.873 -0.491 0.805  O1  Y2W 9  
Y2W O2  O2  O 0 1 N N N N N N 17.084 5.088 55.368 -2.641 2.012  0.360  O2  Y2W 10 
Y2W O3  O3  O 0 1 N N N N N N 14.901 6.170 56.696 -0.317 2.059  -1.245 O3  Y2W 11 
Y2W S1  S1  S 0 1 N N N N N N 10.545 5.957 55.444 2.198  0.167  0.375  S1  Y2W 12 
Y2W O4  O4  O 0 1 N N N N N N 9.858  7.226 55.377 2.023  -0.912 1.283  O4  Y2W 13 
Y2W O5  O5  O 0 1 N N N N N N 10.518 5.406 56.790 3.694  0.183  0.093  O5  Y2W 14 
Y2W O6  O6  O 0 1 N N N N N N 10.214 5.000 54.422 1.899  1.503  0.757  O6  Y2W 15 
Y2W H1  H1  H 0 1 N N N N N N 14.887 6.672 54.666 -0.154 1.076  0.564  H1  Y2W 16 
Y2W H2  H2  H 0 1 N N N N N N 15.463 3.805 55.468 -2.599 0.682  -1.220 H2  Y2W 17 
Y2W H3  H3  H 0 1 N N N N N N 16.345 5.186 52.939 -1.992 -0.243 1.625  H3  Y2W 18 
Y2W H4  H4  H 0 1 N N N N N N 13.079 4.639 55.972 -0.540 -0.476 -2.036 H4  Y2W 19 
Y2W H5  H5  H 0 1 N N N N N N 12.550 7.110 55.898 1.839  -1.165 -1.599 H5  Y2W 20 
Y2W H6  H6  H 0 1 N N N N N N 12.279 6.874 54.138 1.666  0.574  -1.938 H6  Y2W 21 
Y2W H7  H7  H 0 1 N N N N N N 14.221 5.477 52.376 -2.144 -2.512 0.637  H7  Y2W 22 
Y2W H8  H8  H 0 1 N N N N N N 14.212 3.693 52.168 -2.379 -1.795 -0.975 H8  Y2W 23 
Y2W H9  H9  H 0 1 N N N N N N 12.236 4.716 53.336 0.066  -1.401 0.809  H9  Y2W 24 
Y2W H10 H10 H 0 1 N N N N N N 12.222 2.902 54.924 -0.078 -3.572 -0.217 H10 Y2W 25 
Y2W H11 H11 H 0 1 N N N N N N 12.811 2.411 53.482 -0.244 -2.881 -1.721 H11 Y2W 26 
Y2W H13 H13 H 0 1 N N N N N N 17.145 3.084 53.589 -4.150 -1.232 1.360  H13 Y2W 27 
Y2W H14 H14 H 0 1 N N N N N N 17.085 5.266 56.301 -3.598 2.007  0.497  H14 Y2W 28 
Y2W H15 H15 H 0 1 N N N N N N 14.263 6.836 56.925 -0.632 2.904  -0.897 H15 Y2W 29 
Y2W H12 H12 H 0 1 N N N N N N 10.048 5.998 57.366 4.238  0.379  0.868  H12 Y2W 30 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
Y2W C2 C3  SING N N 1  
Y2W C2 C1  SING N N 2  
Y2W O1 C3  SING N N 3  
Y2W C3 C4  SING N N 4  
Y2W C1 N1  SING N N 5  
Y2W C1 C6  SING N N 6  
Y2W O6 S1  DOUB N N 7  
Y2W C4 C5  SING N N 8  
Y2W C4 O2  SING N N 9  
Y2W C6 C7  SING N N 10 
Y2W C6 C5  SING N N 11 
Y2W C7 S1  SING N N 12 
Y2W C5 O3  SING N N 13 
Y2W O4 S1  DOUB N N 14 
Y2W S1 O5  SING N N 15 
Y2W C5 H1  SING N N 16 
Y2W C4 H2  SING N N 17 
Y2W C3 H3  SING N N 18 
Y2W C6 H4  SING N N 19 
Y2W C7 H5  SING N N 20 
Y2W C7 H6  SING N N 21 
Y2W C2 H7  SING N N 22 
Y2W C2 H8  SING N N 23 
Y2W C1 H9  SING N N 24 
Y2W N1 H10 SING N N 25 
Y2W N1 H11 SING N N 26 
Y2W O1 H13 SING N N 27 
Y2W O2 H14 SING N N 28 
Y2W O3 H15 SING N N 29 
Y2W O5 H12 SING N N 30 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
Y2W InChI            InChI                1.06  "InChI=1S/C7H15NO6S/c8-4-1-5(9)7(11)6(10)3(4)2-15(12,13)14/h3-7,9-11H,1-2,8H2,(H,12,13,14)/t3-,4+,5-,6+,7+/m0/s1" 
Y2W InChIKey         InChI                1.06  UVCDOBMNOOKYMK-PJEQPVAWSA-N                                                                                       
Y2W SMILES_CANONICAL CACTVS               3.385 "N[C@@H]1C[C@H](O)[C@@H](O)[C@H](O)[C@H]1C[S](O)(=O)=O"                                                           
Y2W SMILES           CACTVS               3.385 "N[CH]1C[CH](O)[CH](O)[CH](O)[CH]1C[S](O)(=O)=O"                                                                  
Y2W SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C1[C@H]([C@@H]([C@H]([C@@H]([C@H]1O)O)O)CS(=O)(=O)O)N"                                                           
Y2W SMILES           "OpenEye OEToolkits" 2.0.7 "C1C(C(C(C(C1O)O)O)CS(=O)(=O)O)N"                                                                                 
# 
_pdbx_chem_comp_identifier.comp_id           Y2W 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "[(1~{S},2~{R},3~{R},4~{S},6~{R})-6-azanyl-2,3,4-tris(oxidanyl)cyclohexyl]methanesulfonic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
Y2W "Create component" 2023-11-16 PDBE 
Y2W "Initial release"  2024-05-08 RCSB 
Y2W "Modify PCM"       2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            Y2W 
_pdbx_chem_comp_pcm.modified_residue_id                ASP 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               C2 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   OD2 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
