data_5EX
# 
_chem_comp.id                                    5EX 
_chem_comp.name                                  "ethyl (2Z,4S)-4-[(N-{[(cyclobutylmethyl)amino](oxo)acetyl}-L-phenylalanyl)amino]-5-[(3S)-2-oxopyrrolidin-3-yl]pent-2-enoate" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C27 H36 N4 O6" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2015-09-18 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        512.598 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     5EX 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        5DP9 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
5EX C23 C1  C 0 1 N N N N N N -4.019  -9.076  4.152  -7.408 -1.685 0.651  C23 5EX 1  
5EX C22 C2  C 0 1 N N N N N N -5.919  -6.964  1.895  -3.795 -0.819 0.796  C22 5EX 2  
5EX C21 C3  C 0 1 N N N N N N -4.138  -8.465  2.768  -6.010 -1.718 1.270  C21 5EX 3  
5EX C20 C4  C 0 1 N N N N N N -6.182  -7.462  0.507  -2.858 -0.018 -0.048 C20 5EX 4  
5EX C24 C5  C 0 1 N N N N N N -3.838  -10.592 4.180  -8.479 -2.381 1.509  C24 5EX 5  
5EX C26 C6  C 0 1 N N N N N N -3.383  -7.459  -3.032 5.021  -2.324 -2.811 C26 5EX 6  
5EX C27 C7  C 0 1 N N N N N N -5.178  -10.765 4.874  -9.055 -2.939 0.197  C27 5EX 7  
5EX C18 C8  C 0 1 N N N N N N -6.529  -3.181  -5.955 6.310  0.607  2.984  C18 5EX 8  
5EX C10 C9  C 0 1 N N S N N N -6.052  -7.929  -4.522 3.138  0.412  -0.870 C10 5EX 9  
5EX C7  C10 C 0 1 Y N N N N N -12.583 -7.083  1.050  -4.627 3.851  -1.031 C7  5EX 10 
5EX C5  C11 C 0 1 Y N N N N N -10.789 -7.996  -0.288 -3.112 2.807  0.501  C5  5EX 11 
5EX C6  C12 C 0 1 Y N N N N N -11.896 -8.179  0.541  -4.373 3.291  0.207  C6  5EX 12 
5EX C2  C13 C 0 1 N N S N N N -7.925  -7.290  -1.279 -0.643 0.882  -0.522 C2  5EX 13 
5EX C3  C14 C 0 1 N N N N N N -9.179  -6.448  -1.522 -0.730 2.356  -0.122 C3  5EX 14 
5EX C4  C15 C 0 1 Y N N N N N -10.365 -6.708  -0.614 -2.105 2.883  -0.443 C4  5EX 15 
5EX C11 C16 C 0 1 N N N N N N -4.870  -8.901  -4.548 3.285  -0.770 -1.831 C11 5EX 16 
5EX C12 C17 C 0 1 N N S N N N -4.030  -8.820  -3.269 4.629  -1.459 -1.590 C12 5EX 17 
5EX C13 C18 C 0 1 N N N N N N -2.869  -9.751  -3.333 4.519  -2.451 -0.453 C13 5EX 18 
5EX C14 C19 C 0 1 N N N N N N -6.978  -8.136  -5.747 4.146  1.474  -1.224 C14 5EX 19 
5EX C15 C20 C 0 1 N N N N N N -7.746  -6.832  -5.943 5.052  1.856  -0.327 C15 5EX 20 
5EX C16 C21 C 0 1 N N N N N N -6.961  -5.609  -6.356 5.320  1.018  0.850  C16 5EX 21 
5EX C17 C22 C 0 1 N N N N N N -7.044  -6.993  -2.453 0.765  0.387  -0.316 C17 5EX 22 
5EX O1  O1  O 0 1 N N N N N N -2.994  -10.897 -3.704 3.967  -2.237 0.605  O1  5EX 23 
5EX C8  C23 C 0 1 Y N N N N N -12.169 -5.797  0.723  -3.622 3.922  -1.977 C8  5EX 24 
5EX O2  O2  O 0 1 N N N N N N -7.338  -4.340  -5.771 6.088  1.489  1.853  O2  5EX 25 
5EX C9  C24 C 0 1 Y N N N N N -11.073 -5.612  -0.110 -2.361 3.438  -1.683 C9  5EX 26 
5EX N1  N1  N 0 1 N N N N N N -1.754  -9.143  -2.934 5.121  -3.606 -0.787 N1  5EX 27 
5EX C19 C25 C 0 1 N N N N N N -7.406  -1.951  -6.016 7.198  1.309  4.013  C19 5EX 28 
5EX O3  O3  O 0 1 N N N N N N -6.036  -5.620  -7.157 4.848  -0.100 0.920  O3  5EX 29 
5EX N2  N2  N 0 1 N N N N N N -7.341  -7.010  0.030  -1.562 0.096  0.305  N2  5EX 30 
5EX C25 C26 C 0 1 N N N N N N -1.963  -7.763  -2.560 5.699  -3.536 -2.134 C25 5EX 31 
5EX N   N3  N 0 1 N N N N N N -6.856  -8.010  -3.310 1.786  0.965  -0.980 N   5EX 32 
5EX O4  O4  O 0 1 N N N N N N -6.550  -5.884  -2.560 0.980  -0.531 0.447  O4  5EX 33 
5EX O21 O5  O 0 1 N N N N N N -5.426  -8.176  -0.165 -3.263 0.530  -1.052 O21 5EX 34 
5EX O5  O6  O 0 1 N N N N N N -6.585  -6.012  2.261  -3.390 -1.367 1.800  O5  5EX 35 
5EX N6  N4  N 0 1 N N N N N N -5.070  -7.378  2.828  -5.091 -0.932 0.442  N6  5EX 36 
5EX C28 C27 C 0 1 N N N N N N -5.344  -9.253  4.877  -7.644 -2.787 -0.396 C28 5EX 37 
5EX H1  H1  H 0 1 N N N N N N -3.272  -8.559  4.772  -7.699 -0.691 0.311  H1  5EX 38 
5EX H2  H2  H 0 1 N N N N N N -4.498  -9.224  2.058  -6.047 -1.294 2.274  H2  5EX 39 
5EX H3  H3  H 0 1 N N N N N N -3.156  -8.094  2.441  -5.660 -2.749 1.324  H3  5EX 40 
5EX H4  H4  H 0 1 N N N N N N -3.790  -11.053 3.183  -8.077 -3.148 2.171  H4  5EX 41 
5EX H5  H5  H 0 1 N N N N N N -2.979  -10.927 4.780  -9.147 -1.687 2.019  H5  5EX 42 
5EX H6  H6  H 0 1 N N N N N N -3.362  -6.875  -3.964 4.137  -2.633 -3.369 H6  5EX 43 
5EX H7  H7  H 0 1 N N N N N N -3.934  -6.900  -2.261 5.722  -1.794 -3.456 H7  5EX 44 
5EX H8  H8  H 0 1 N N N N N N -5.931  -11.302 4.278  -9.388 -3.974 0.272  H8  5EX 45 
5EX H9  H9  H 0 1 N N N N N N -5.114  -11.215 5.876  -9.796 -2.288 -0.266 H9  5EX 46 
5EX H10 H10 H 0 1 N N N N N N -5.965  -3.275  -6.895 5.353  0.355  3.442  H10 5EX 47 
5EX H11 H11 H 0 1 N N N N N N -5.827  -3.088  -5.113 6.800  -0.305 2.643  H11 5EX 48 
5EX H12 H12 H 0 1 N N N N N N -5.641  -6.911  -4.595 3.310  0.073  0.151  H12 5EX 49 
5EX H13 H13 H 0 1 N N N N N N -13.435 -7.230  1.697  -5.612 4.229  -1.260 H13 5EX 50 
5EX H14 H14 H 0 1 N N N N N N -10.260 -8.853  -0.678 -2.913 2.370  1.469  H14 5EX 51 
5EX H15 H15 H 0 1 N N N N N N -12.221 -9.179  0.789  -5.160 3.231  0.945  H15 5EX 52 
5EX H16 H16 H 0 1 N N N N N N -8.214  -8.351  -1.321 -0.917 0.773  -1.572 H16 5EX 53 
5EX H17 H17 H 0 1 N N N N N N -8.897  -5.391  -1.407 -0.543 2.454  0.947  H17 5EX 54 
5EX H18 H18 H 0 1 N N N N N N -9.506  -6.629  -2.556 0.016  2.927  -0.675 H18 5EX 55 
5EX H19 H19 H 0 1 N N N N N N -5.255  -9.926  -4.655 2.476  -1.480 -1.660 H19 5EX 56 
5EX H20 H20 H 0 1 N N N N N N -4.230  -8.658  -5.409 3.240  -0.410 -2.859 H20 5EX 57 
5EX H21 H21 H 0 1 N N N N N N -4.662  -9.075  -2.406 5.404  -0.721 -1.381 H21 5EX 58 
5EX H22 H22 H 0 1 N N N N N N -7.063  -9.030  -6.346 4.134  1.926  -2.204 H22 5EX 59 
5EX H24 H24 H 0 1 N N N N N N -8.814  -6.785  -5.792 5.591  2.782  -0.464 H24 5EX 60 
5EX H26 H26 H 0 1 N N N N N N -12.699 -4.942  1.116  -3.821 4.356  -2.946 H26 5EX 61 
5EX H27 H27 H 0 1 N N N N N N -10.764 -4.611  -0.371 -1.574 3.497  -2.421 H27 5EX 62 
5EX H28 H28 H 0 1 N N N N N N -0.863  -9.595  -2.897 5.168  -4.385 -0.211 H28 5EX 63 
5EX H29 H29 H 0 1 N N N N N N -6.778  -1.059  -6.158 7.364  0.647  4.862  H29 5EX 64 
5EX H30 H30 H 0 1 N N N N N N -8.108  -2.043  -6.858 8.155  1.561  3.555  H30 5EX 65 
5EX H31 H31 H 0 1 N N N N N N -7.970  -1.856  -5.077 6.707  2.221  4.354  H31 5EX 66 
5EX H32 H32 H 0 1 N N N N N N -7.869  -6.414  0.635  -1.238 -0.342 1.108  H32 5EX 67 
5EX H33 H33 H 0 1 N N N N N N -1.236  -7.108  -3.063 5.478  -4.449 -2.687 H33 5EX 68 
5EX H34 H34 H 0 1 N N N N N N -1.878  -7.637  -1.471 6.776  -3.381 -2.075 H34 5EX 69 
5EX H35 H35 H 0 1 N N N N N N -7.298  -8.882  -3.102 1.626  1.748  -1.531 H35 5EX 70 
5EX H36 H36 H 0 1 N N N N N N -5.083  -6.864  3.685  -5.415 -0.494 -0.360 H36 5EX 71 
5EX H37 H37 H 0 1 N N N N N N -5.363  -8.810  5.884  -7.639 -2.422 -1.423 H37 5EX 72 
5EX H38 H38 H 0 1 N N N N N N -6.215  -8.900  4.305  -7.015 -3.666 -0.255 H38 5EX 73 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
5EX O3  C16 DOUB N N 1  
5EX C16 C15 SING N N 2  
5EX C16 O2  SING N N 3  
5EX C19 C18 SING N N 4  
5EX C18 O2  SING N N 5  
5EX C15 C14 DOUB N Z 6  
5EX C14 C10 SING N N 7  
5EX C11 C10 SING N N 8  
5EX C11 C12 SING N N 9  
5EX C10 N   SING N N 10 
5EX O1  C13 DOUB N N 11 
5EX C13 C12 SING N N 12 
5EX C13 N1  SING N N 13 
5EX N   C17 SING N N 14 
5EX C12 C26 SING N N 15 
5EX C26 C25 SING N N 16 
5EX N1  C25 SING N N 17 
5EX O4  C17 DOUB N N 18 
5EX C17 C2  SING N N 19 
5EX C3  C2  SING N N 20 
5EX C3  C4  SING N N 21 
5EX C2  N2  SING N N 22 
5EX C4  C5  DOUB Y N 23 
5EX C4  C9  SING Y N 24 
5EX C5  C6  SING Y N 25 
5EX O21 C20 DOUB N N 26 
5EX C9  C8  DOUB Y N 27 
5EX N2  C20 SING N N 28 
5EX C20 C22 SING N N 29 
5EX C6  C7  DOUB Y N 30 
5EX C8  C7  SING Y N 31 
5EX C22 O5  DOUB N N 32 
5EX C22 N6  SING N N 33 
5EX C21 N6  SING N N 34 
5EX C21 C23 SING N N 35 
5EX C23 C24 SING N N 36 
5EX C23 C28 SING N N 37 
5EX C24 C27 SING N N 38 
5EX C27 C28 SING N N 39 
5EX C23 H1  SING N N 40 
5EX C21 H2  SING N N 41 
5EX C21 H3  SING N N 42 
5EX C24 H4  SING N N 43 
5EX C24 H5  SING N N 44 
5EX C26 H6  SING N N 45 
5EX C26 H7  SING N N 46 
5EX C27 H8  SING N N 47 
5EX C27 H9  SING N N 48 
5EX C18 H10 SING N N 49 
5EX C18 H11 SING N N 50 
5EX C10 H12 SING N N 51 
5EX C7  H13 SING N N 52 
5EX C5  H14 SING N N 53 
5EX C6  H15 SING N N 54 
5EX C2  H16 SING N N 55 
5EX C3  H17 SING N N 56 
5EX C3  H18 SING N N 57 
5EX C11 H19 SING N N 58 
5EX C11 H20 SING N N 59 
5EX C12 H21 SING N N 60 
5EX C14 H22 SING N N 61 
5EX C15 H24 SING N N 62 
5EX C8  H26 SING N N 63 
5EX C9  H27 SING N N 64 
5EX N1  H28 SING N N 65 
5EX C19 H29 SING N N 66 
5EX C19 H30 SING N N 67 
5EX C19 H31 SING N N 68 
5EX N2  H32 SING N N 69 
5EX C25 H33 SING N N 70 
5EX C25 H34 SING N N 71 
5EX N   H35 SING N N 72 
5EX N6  H36 SING N N 73 
5EX C28 H37 SING N N 74 
5EX C28 H38 SING N N 75 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
5EX SMILES           ACDLabs              12.01 "C1(CCC1)CNC(=O)C(NC(Cc2ccccc2)C(NC(CC3CCNC3=O)[C@H]=[C@H]C(OCC)=O)=O)=O"                                                                                                                                                                
5EX InChI            InChI                1.03  "InChI=1S/C27H36N4O6/c1-2-37-23(32)12-11-21(16-20-13-14-28-24(20)33)30-25(34)22(15-18-7-4-3-5-8-18)31-27(36)26(35)29-17-19-9-6-10-19/h3-5,7-8,11-12,19-22H,2,6,9-10,13-17H2,1H3,(H,28,33)(H,29,35)(H,30,34)(H,31,36)/t20-,21+,22-/m0/s1" 
5EX InChIKey         InChI                1.03  JXIYUFBHNQDFQS-BDTNDASRSA-N                                                                                                                                                                                                              
5EX SMILES_CANONICAL CACTVS               3.385 "CCOC(=O)\C=C/[C@H](C[C@@H]1CCNC1=O)NC(=O)[C@H](Cc2ccccc2)NC(=O)C(=O)NCC3CCC3"                                                                                                                                                           
5EX SMILES           CACTVS               3.385 "CCOC(=O)C=C[CH](C[CH]1CCNC1=O)NC(=O)[CH](Cc2ccccc2)NC(=O)C(=O)NCC3CCC3"                                                                                                                                                                 
5EX SMILES_CANONICAL "OpenEye OEToolkits" 1.9.2 "CCOC(=O)C=C[C@H](C[C@@H]1CCNC1=O)NC(=O)[C@H](Cc2ccccc2)NC(=O)C(=O)NCC3CCC3"                                                                                                                                                             
5EX SMILES           "OpenEye OEToolkits" 1.9.2 "CCOC(=O)C=CC(CC1CCNC1=O)NC(=O)C(Cc2ccccc2)NC(=O)C(=O)NCC3CCC3"                                                                                                                                                                          
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
5EX "SYSTEMATIC NAME" ACDLabs              12.01 "ethyl (2Z,4S)-4-[(N-{[(cyclobutylmethyl)amino](oxo)acetyl}-L-phenylalanyl)amino]-5-[(3S)-2-oxopyrrolidin-3-yl]pent-2-enoate"                                      
5EX "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.9.2 "ethyl (4S)-4-[[(2S)-2-[[2-(cyclobutylmethylamino)-2-oxidanylidene-ethanoyl]amino]-3-phenyl-propanoyl]amino]-5-[(3S)-2-oxidanylidenepyrrolidin-3-yl]pent-2-enoate" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
5EX "Create component" 2015-09-18 RCSB 
5EX "Initial release"  2016-03-30 RCSB 
5EX "Modify PCM"       2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            5EX 
_pdbx_chem_comp_pcm.modified_residue_id                CYS 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               C14 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   SG 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
