data_EDX
# 
_chem_comp.id                                    EDX 
_chem_comp.name                                  "(2~{S})-6-carbamimidamido-2-(phenylmethoxycarbonylamino)hexanoic acid" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C15 H22 N4 O4" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2019-12-13 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        322.360 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     EDX 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   Y 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        6L5Z 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBJ 
_chem_comp.pdbx_pcm                              N 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
EDX C20 C1  C 0 1 N N N N N N 57.383 29.023 1.508  -1.899 2.010  0.378  C20 EDX 1  
EDX C21 C2  C 0 1 N N N N N N 55.977 29.485 1.792  -2.415 0.686  -0.190 C21 EDX 2  
EDX C22 C3  C 0 1 N N N N N N 55.560 30.351 0.599  -3.792 0.379  0.402  C22 EDX 3  
EDX C06 C4  C 0 1 N N N N N N 59.244 27.555 2.055  -0.068 3.677  0.249  C06 EDX 4  
EDX C08 C5  C 0 1 N N S N N N 58.062 28.329 2.639  -0.522 2.317  -0.214 C08 EDX 5  
EDX C23 C6  C 0 1 N N N N N N 55.914 29.674 -0.733 -4.308 -0.945 -0.166 C23 EDX 6  
EDX C25 C7  C 0 1 N N N N N N 54.062 28.584 -2.241 -6.292 -2.385 0.035  C25 EDX 7  
EDX N09 N1  N 0 1 N N N N N N 58.615 29.325 3.472  0.438  1.304  0.232  N09 EDX 8  
EDX N24 N2  N 0 1 N N N N N N 54.606 29.302 -1.141 -5.627 -1.238 0.401  N24 EDX 9  
EDX N26 N3  N 0 1 N N N N N N 52.824 28.545 -2.167 -7.530 -2.660 0.567  N26 EDX 10 
EDX N27 N4  N 0 1 N N N N N N 54.710 27.956 -3.370 -5.749 -3.210 -0.816 N27 EDX 11 
EDX O07 O1  O 0 1 N N N N N N 60.346 27.983 1.951  0.952  3.789  0.886  O07 EDX 12 
EDX O1  O2  O 0 1 N Y N N N N 58.969 26.214 1.649  -0.798 4.765  -0.046 O1  EDX 13 
EDX H1  H1  H 0 1 N N N N N N 57.348 28.330 0.655  -2.592 2.810  0.119  H1  EDX 14 
EDX H2  H2  H 0 1 N N N N N N 57.984 29.905 1.240  -1.820 1.934  1.462  H2  EDX 15 
EDX H3  H3  H 0 1 N N N N N N 55.950 30.076 2.719  -2.494 0.762  -1.274 H3  EDX 16 
EDX H4  H4  H 0 1 N N N N N N 55.304 28.620 1.889  -1.722 -0.115 0.069  H4  EDX 17 
EDX H5  H5  H 0 1 N N N N N N 56.081 31.318 0.659  -3.713 0.303  1.486  H5  EDX 18 
EDX H6  H6  H 0 1 N N N N N N 54.473 30.517 0.639  -4.485 1.180  0.143  H6  EDX 19 
EDX H7  H7  H 0 1 N N N N N N 57.375 27.657 3.174  -0.583 2.305  -1.302 H7  EDX 20 
EDX H8  H8  H 0 1 N N N N N N 56.567 28.800 -0.592 -4.387 -0.869 -1.250 H8  EDX 21 
EDX H9  H9  H 0 1 N N N N N N 56.384 30.373 -1.440 -3.615 -1.745 0.093  H9  EDX 22 
EDX H10 H10 H 0 1 N N N N N N 59.313 29.951 3.821  0.282  0.819  1.058  H10 EDX 23 
EDX H13 H13 H 0 1 N N N N N N 53.902 29.619 -0.506 -6.030 -0.624 1.034  H13 EDX 24 
EDX H14 H14 H 0 1 N N N N N N 52.355 28.986 -1.402 -7.933 -2.046 1.200  H14 EDX 25 
EDX H15 H15 H 0 1 N N N N N N 52.296 28.072 -2.872 -7.999 -3.469 0.309  H15 EDX 26 
EDX H16 H16 H 0 1 N N N N N N 55.704 28.064 -3.339 -4.876 -3.015 -1.191 H16 EDX 27 
EDX H17 H17 H 0 1 N N N N N N 59.766 25.811 1.325  -0.466 5.615  0.272  H17 EDX 28 
EDX C1  C8  C 0 1 N N N N N N ?      ?      ?      1.536  1.045  -0.504 C1  EDX 29 
EDX O2  O3  O 0 1 N N N N N N ?      ?      ?      1.730  1.653  -1.539 O2  EDX 30 
EDX O3  O4  O 0 1 N N N N N N ?      ?      ?      2.418  0.115  -0.094 O3  EDX 31 
EDX C2  C9  C 0 1 N N N N N N ?      ?      ?      3.578  -0.111 -0.938 C2  EDX 32 
EDX C3  C10 C 0 1 Y N N N N N ?      ?      ?      4.446  -1.179 -0.324 C3  EDX 33 
EDX C4  C11 C 0 1 Y N N N N N ?      ?      ?      4.240  -2.507 -0.647 C4  EDX 34 
EDX C5  C12 C 0 1 Y N N N N N ?      ?      ?      5.036  -3.487 -0.084 C5  EDX 35 
EDX C6  C13 C 0 1 Y N N N N N ?      ?      ?      6.038  -3.139 0.803  C6  EDX 36 
EDX C7  C14 C 0 1 Y N N N N N ?      ?      ?      6.244  -1.811 1.126  C7  EDX 37 
EDX C8  C15 C 0 1 Y N N N N N ?      ?      ?      5.451  -0.831 0.559  C8  EDX 38 
EDX H11 H11 H 0 1 N N N N N N ?      ?      ?      3.251  -0.433 -1.927 H11 EDX 39 
EDX H12 H12 H 0 1 N N N N N N ?      ?      ?      4.148  0.813  -1.027 H12 EDX 40 
EDX H18 H18 H 0 1 N N N N N N ?      ?      ?      3.458  -2.780 -1.340 H18 EDX 41 
EDX H19 H19 H 0 1 N N N N N N ?      ?      ?      4.875  -4.525 -0.336 H19 EDX 42 
EDX H20 H20 H 0 1 N N N N N N ?      ?      ?      6.659  -3.904 1.244  H20 EDX 43 
EDX H21 H21 H 0 1 N N N N N N ?      ?      ?      7.026  -1.538 1.819  H21 EDX 44 
EDX H22 H22 H 0 1 N N N N N N ?      ?      ?      5.612  0.207  0.812  H22 EDX 45 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
EDX N27 C25 DOUB N N 1  
EDX C25 N26 SING N N 2  
EDX C25 N24 SING N N 3  
EDX N24 C23 SING N N 4  
EDX C23 C22 SING N N 5  
EDX C22 C21 SING N N 6  
EDX C20 C21 SING N N 7  
EDX C20 C08 SING N N 8  
EDX O07 C06 DOUB N N 9  
EDX C06 C08 SING N N 10 
EDX C08 N09 SING N N 11 
EDX C06 O1  SING N N 12 
EDX C20 H1  SING N N 13 
EDX C20 H2  SING N N 14 
EDX C21 H3  SING N N 15 
EDX C21 H4  SING N N 16 
EDX C22 H5  SING N N 17 
EDX C22 H6  SING N N 18 
EDX C08 H7  SING N N 19 
EDX C23 H8  SING N N 20 
EDX C23 H9  SING N N 21 
EDX N09 H10 SING N N 22 
EDX N24 H13 SING N N 23 
EDX N26 H14 SING N N 24 
EDX N26 H15 SING N N 25 
EDX N27 H16 SING N N 26 
EDX O1  H17 SING N N 27 
EDX N09 C1  SING N N 28 
EDX C1  O2  DOUB N N 29 
EDX C1  O3  SING N N 30 
EDX O3  C2  SING N N 31 
EDX C2  C3  SING N N 32 
EDX C3  C4  SING Y N 33 
EDX C4  C5  DOUB Y N 34 
EDX C5  C6  SING Y N 35 
EDX C6  C7  DOUB Y N 36 
EDX C7  C8  SING Y N 37 
EDX C8  C3  DOUB Y N 38 
EDX C2  H11 SING N N 39 
EDX C2  H12 SING N N 40 
EDX C4  H18 SING N N 41 
EDX C5  H19 SING N N 42 
EDX C6  H20 SING N N 43 
EDX C7  H21 SING N N 44 
EDX C8  H22 SING N N 45 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
EDX InChI            InChI                1.03  "InChI=1S/C15H22N4O4/c16-14(17)18-9-5-4-8-12(13(20)21)19-15(22)23-10-11-6-2-1-3-7-11/h1-3,6-7,12H,4-5,8-10H2,(H,19,22)(H,20,21)(H4,16,17,18)/t12-/m0/s1" 
EDX InChIKey         InChI                1.03  KTPKIMJAZDFELN-LBPRGKRZSA-N                                                                                                                              
EDX SMILES_CANONICAL CACTVS               3.385 "NC(=N)NCCCC[C@H](NC(=O)OCc1ccccc1)C(O)=O"                                                                                                               
EDX SMILES           CACTVS               3.385 "NC(=N)NCCCC[CH](NC(=O)OCc1ccccc1)C(O)=O"                                                                                                                
EDX SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "[H]/N=C(/N)\NCCCC[C@@H](C(=O)O)NC(=O)OCc1ccccc1"                                                                                                        
EDX SMILES           "OpenEye OEToolkits" 2.0.7 "c1ccc(cc1)COC(=O)NC(CCCCNC(=N)N)C(=O)O"                                                                                                                 
# 
_pdbx_chem_comp_identifier.comp_id           EDX 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "(2~{S})-6-carbamimidamido-2-(phenylmethoxycarbonylamino)hexanoic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
EDX "Create component" 2019-12-13 PDBJ 
EDX "Initial release"  2020-10-28 RCSB 
EDX "Modify PCM"       2024-09-27 PDBE 
# 
