data_F9X
#

_chem_comp.id                                   F9X
_chem_comp.name                                 "(2S,3R)-2-[[2-methyl-3-oxidanyl-5-(phosphonooxymethyl)pyridin-4-yl]methylamino]-3-oxidanyl-pentanoic acid"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C13 H21 N2 O8 P"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2020-04-22
_chem_comp.pdbx_modified_date                   2021-04-16
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       364.288
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    F9X
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       7BXR
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 PDBJ
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
F9X  P    P1   P  0  1  N  N  N   -7.291  -2.295  15.508  -3.961  -1.213   0.275  P    F9X   1  
F9X  O1P  O1   O  0  1  N  N  N   -8.359  -1.243  15.582  -4.289  -1.685  -1.229  O1P  F9X   2  
F9X  O2P  O2   O  0  1  N  N  N   -7.852  -3.604  15.020  -5.332  -0.827   1.026  O2P  F9X   3  
F9X  O3P  O3   O  0  1  N  N  N   -6.139  -1.807  14.655  -3.293  -2.314   1.003  O3P  F9X   4  
F9X  N1   N1   N  0  1  Y  N  N   -4.768  -4.174  20.485  -1.203   3.647   0.464  N1   F9X   5  
F9X  CA   C1   C  0  1  N  N  S  -10.217  -0.876  21.324   2.619  -1.321  -0.638  CA   F9X   6  
F9X  C    C2   C  0  1  N  N  N  -10.306   0.500  21.878   1.761  -2.555  -0.750  C    F9X   7  
F9X  O    O4   O  0  1  N  N  N  -11.338   1.178  21.641   0.599  -2.515  -0.420  O    F9X   8  
F9X  CB   C3   C  0  1  N  N  R  -11.068  -1.785  22.202   3.792  -1.598   0.304  CB   F9X   9  
F9X  CG   C4   C  0  1  N  N  N  -12.516  -1.857  21.724   4.591  -0.311   0.516  CG   F9X  10  
F9X  N    N2   N  0  1  N  N  N   -8.806  -1.318  21.278   1.815  -0.212  -0.105  N    F9X  11  
F9X  OB   O5   O  0  1  N  N  N  -10.477  -3.080  22.223   3.294  -2.062   1.561  OB   F9X  12  
F9X  CD   C5   C  0  1  N  N  N  -13.459  -1.430  22.825   5.834  -0.615   1.356  CD   F9X  13  
F9X  C2   C6   C  0  1  Y  N  N   -5.211  -3.461  21.549   0.030   3.888   0.066  C2   F9X  14  
F9X  C2A  C7   C  0  1  N  N  N   -4.417  -3.462  22.838   0.600   5.276   0.202  C2A  F9X  15  
F9X  C3   C8   C  0  1  Y  N  N   -6.474  -2.682  21.461   0.810   2.876  -0.477  C3   F9X  16  
F9X  C4   C9   C  0  1  Y  N  N   -7.203  -2.740  20.175   0.271   1.599  -0.597  C4   F9X  17  
F9X  C4A  C10  C  0  1  N  N  N   -8.492  -1.986  20.005   1.082   0.471  -1.180  C4A  F9X  18  
F9X  C5   C11  C  0  1  Y  N  N   -6.605  -3.566  19.089  -1.029   1.390  -0.166  C5   F9X  19  
F9X  C5A  C12  C  0  1  N  N  N   -7.244  -3.665  17.743  -1.657   0.024  -0.274  C5A  F9X  20  
F9X  C6   C13  C  0  1  Y  N  N   -5.408  -4.238  19.303  -1.743   2.447   0.364  C6   F9X  21  
F9X  O3   O6   O  0  1  N  N  N   -6.939  -1.963  22.532   2.081   3.129  -0.886  O3   F9X  22  
F9X  O4P  O7   O  0  1  N  N  N   -6.745  -2.552  17.003  -2.992   0.072   0.235  O4P  F9X  23  
F9X  OT   O8   O  0  1  N  N  N   -9.340   0.868  22.578   2.287  -3.698  -1.216  OT   F9X  24  
F9X  H1   H1   H  0  1  N  N  N   -8.092  -0.484  15.077  -4.729  -1.011  -1.766  H1   F9X  25  
F9X  H2   H2   H  0  1  N  N  N   -7.371  -3.889  14.252  -5.965  -1.555   1.087  H2   F9X  26  
F9X  H3   H3   H  0  1  N  N  N  -10.632  -0.882  20.305   3.000  -1.052  -1.623  H3   F9X  27  
F9X  H4   H4   H  0  1  N  N  N  -11.068  -1.370  23.221   4.437  -2.359  -0.134  H4   F9X  28  
F9X  H5   H5   H  0  1  N  N  N  -12.645  -1.191  20.858   4.896   0.090  -0.450  H5   F9X  29  
F9X  H6   H6   H  0  1  N  N  N  -12.749  -2.891  21.429   3.972   0.420   1.035  H6   F9X  30  
F9X  H7   H7   H  0  1  N  N  N   -8.641  -1.957  22.030   2.390   0.437   0.409  H7   F9X  31  
F9X  H9   H9   H  0  1  N  N  N  -10.998  -3.658  22.768   2.711  -1.434   2.009  H9   F9X  32  
F9X  H10  H10  H  0  1  N  N  N  -14.496  -1.488  22.463   6.403   0.301   1.507  H10  F9X  33  
F9X  H11  H11  H  0  1  N  N  N  -13.335  -2.096  23.692   5.529  -1.017   2.323  H11  F9X  34  
F9X  H12  H12  H  0  1  N  N  N  -13.232  -0.395  23.122   6.453  -1.347   0.837  H12  F9X  35  
F9X  H13  H13  H  0  1  N  N  N   -3.523  -4.091  22.718   1.086   5.376   1.172  H13  F9X  36  
F9X  H14  H14  H  0  1  N  N  N   -4.112  -2.434  23.081   1.329   5.449  -0.590  H14  F9X  37  
F9X  H15  H15  H  0  1  N  N  N   -5.040  -3.862  23.652  -0.204   6.008   0.121  H15  F9X  38  
F9X  H16  H16  H  0  1  N  N  N   -8.382  -1.236  19.208   1.791   0.870  -1.906  H16  F9X  39  
F9X  H17  H17  H  0  1  N  N  N   -9.300  -2.685  19.742   0.417  -0.238  -1.674  H17  F9X  40  
F9X  H18  H18  H  0  1  N  N  N   -8.339  -3.608  17.832  -1.678  -0.285  -1.319  H18  F9X  41  
F9X  H19  H19  H  0  1  N  N  N   -6.964  -4.609  17.253  -1.073  -0.691   0.305  H19  F9X  42  
F9X  H20  H20  H  0  1  N  N  N   -4.982  -4.825  18.503  -2.757   2.290   0.702  H20  F9X  43  
F9X  H21  H21  H  0  1  N  N  N   -6.334  -2.051  23.259   2.748   3.001  -0.199  H21  F9X  44  
F9X  H22  H22  H  0  1  N  N  N   -9.503   1.744  22.907   1.698  -4.463  -1.270  H22  F9X  45  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
F9X  O3P  P    DOUB  N  N   1  
F9X  O2P  P    SING  N  N   2  
F9X  P    O1P  SING  N  N   3  
F9X  P    O4P  SING  N  N   4  
F9X  O4P  C5A  SING  N  N   5  
F9X  C5A  C5   SING  N  N   6  
F9X  C5   C6   DOUB  Y  N   7  
F9X  C5   C4   SING  Y  N   8  
F9X  C6   N1   SING  Y  N   9  
F9X  C4A  C4   SING  N  N  10  
F9X  C4A  N    SING  N  N  11  
F9X  C4   C3   DOUB  Y  N  12  
F9X  N1   C2   DOUB  Y  N  13  
F9X  N    CA   SING  N  N  14  
F9X  CA   C    SING  N  N  15  
F9X  CA   CB   SING  N  N  16  
F9X  C3   C2   SING  Y  N  17  
F9X  C3   O3   SING  N  N  18  
F9X  C2   C2A  SING  N  N  19  
F9X  O    C    DOUB  N  N  20  
F9X  CG   CB   SING  N  N  21  
F9X  CG   CD   SING  N  N  22  
F9X  C    OT   SING  N  N  23  
F9X  CB   OB   SING  N  N  24  
F9X  O1P  H1   SING  N  N  25  
F9X  O2P  H2   SING  N  N  26  
F9X  CA   H3   SING  N  N  27  
F9X  CB   H4   SING  N  N  28  
F9X  CG   H5   SING  N  N  29  
F9X  CG   H6   SING  N  N  30  
F9X  N    H7   SING  N  N  31  
F9X  OB   H9   SING  N  N  32  
F9X  CD   H10  SING  N  N  33  
F9X  CD   H11  SING  N  N  34  
F9X  CD   H12  SING  N  N  35  
F9X  C2A  H13  SING  N  N  36  
F9X  C2A  H14  SING  N  N  37  
F9X  C2A  H15  SING  N  N  38  
F9X  C4A  H16  SING  N  N  39  
F9X  C4A  H17  SING  N  N  40  
F9X  C5A  H18  SING  N  N  41  
F9X  C5A  H19  SING  N  N  42  
F9X  C6   H20  SING  N  N  43  
F9X  O3   H21  SING  N  N  44  
F9X  OT   H22  SING  N  N  45  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
F9X  InChI             InChI                 1.03   "InChI=1S/C13H21N2O8P/c1-3-10(16)11(13(18)19)15-5-9-8(6-23-24(20,21)22)4-14-7(2)12(9)17/h4,10-11,15-17H,3,5-6H2,1-2H3,(H,18,19)(H2,20,21,22)/t10-,11+/m1/s1"  
F9X  InChIKey          InChI                 1.03   BXUMTZWSUSTQMU-MNOVXSKESA-N  
F9X  SMILES_CANONICAL  CACTVS                3.385  "CC[C@@H](O)[C@H](NCc1c(O)c(C)ncc1CO[P](O)(O)=O)C(O)=O"  
F9X  SMILES            CACTVS                3.385  "CC[CH](O)[CH](NCc1c(O)c(C)ncc1CO[P](O)(O)=O)C(O)=O"  
F9X  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "CC[C@H]([C@@H](C(=O)O)NCc1c(cnc(c1O)C)COP(=O)(O)O)O"  
F9X  SMILES            "OpenEye OEToolkits"  2.0.7  "CCC(C(C(=O)O)NCc1c(cnc(c1O)C)COP(=O)(O)O)O"  
#
_pdbx_chem_comp_identifier.comp_id          F9X
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version  2.0.7
_pdbx_chem_comp_identifier.identifier       "(2~{S},3~{R})-2-[[2-methyl-3-oxidanyl-5-(phosphonooxymethyl)pyridin-4-yl]methylamino]-3-oxidanyl-pentanoic acid"
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
F9X  "Create component"  2020-04-22  PDBJ  
F9X  "Initial release"   2021-04-21  RCSB  
##
