data_KDX
# 
_chem_comp.id                                    KDX 
_chem_comp.name                                  "9-methoxy-3,5-dihydro-4H-pyrimido[5,4-b]indol-4-one" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C11 H9 N3 O2" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2022-02-03 
_chem_comp.pdbx_modified_date                    2022-10-07 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        215.208 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     KDX 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        5SKB 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
KDX N3  N1  N 0 1 Y N N 12.983 35.246 -13.641 0.846  1.770  0.004  N3  KDX 1  
KDX C4  C1  C 0 1 Y N N 14.470 36.379 -14.865 -0.714 0.140  0.004  C4  KDX 2  
KDX C5  C2  C 0 1 Y N N 13.795 35.138 -14.745 -0.512 1.531  0.001  C5  KDX 3  
KDX C6  C3  C 0 1 N N N 12.536 37.177 -11.955 2.915  0.255  -0.002 C6  KDX 4  
KDX C10 C4  C 0 1 Y N N 15.395 36.659 -15.867 -2.015 -0.377 0.002  C10 KDX 5  
KDX C15 C5  C 0 1 Y N N 15.621 35.632 -16.802 -3.094 0.487  -0.002 C15 KDX 6  
KDX C1  C6  C 0 1 Y N N 13.136 36.509 -13.054 1.538  0.573  0.002  C1  KDX 7  
KDX C2  C7  C 0 1 Y N N 14.052 37.267 -13.789 0.619  -0.474 -0.002 C2  KDX 8  
KDX N7  N2  N 0 1 N N N 14.395 38.551 -13.471 1.057  -1.746 -0.004 N7  KDX 9  
KDX N8  N3  N 0 1 N N N 12.860 38.506 -11.722 3.274  -1.047 0.001  N8  KDX 10 
KDX C9  C8  C 0 1 N N N 13.796 39.171 -12.475 2.330  -2.021 -0.003 C9  KDX 11 
KDX O11 O1  O 0 1 N N N 11.691 36.578 -11.284 3.759  1.136  0.001  O11 KDX 12 
KDX C12 C9  C 0 1 Y N N 14.035 34.135 -15.673 -1.616 2.381  -0.003 C12 KDX 13 
KDX O13 O2  O 0 1 N N N 15.967 37.943 -15.850 -2.215 -1.720 0.004  O13 KDX 14 
KDX C14 C10 C 0 1 Y N N 14.943 34.400 -16.694 -2.891 1.858  -0.004 C14 KDX 15 
KDX C16 C11 C 0 1 N N N 17.166 38.255 -15.099 -3.570 -2.174 0.001  C16 KDX 16 
KDX H1  H1  H 0 1 N N N 12.373 34.528 -13.306 1.256  2.649  0.003  H1  KDX 17 
KDX H2  H2  H 0 1 N N N 16.320 35.789 -17.610 -4.099 0.092  -0.004 H2  KDX 18 
KDX H3  H3  H 0 1 N N N 12.397 38.995 -10.982 4.214  -1.287 0.005  H3  KDX 19 
KDX H4  H4  H 0 1 N N N 14.040 40.199 -12.251 2.644  -3.055 -0.005 H4  KDX 20 
KDX H5  H5  H 0 1 N N N 13.534 33.181 -15.605 -1.472 3.451  -0.005 H5  KDX 21 
KDX H6  H6  H 0 1 N N N 15.135 33.634 -17.431 -3.741 2.524  -0.008 H6  KDX 22 
KDX H7  H7  H 0 1 N N N 17.421 39.316 -15.238 -3.589 -3.263 0.003  H7  KDX 23 
KDX H8  H8  H 0 1 N N N 16.991 38.057 -14.031 -4.080 -1.800 0.890  H8  KDX 24 
KDX H9  H9  H 0 1 N N N 17.996 37.628 -15.457 -4.076 -1.803 -0.890 H9  KDX 25 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
KDX C1  C2  DOUB Y N 1  
KDX C1  N3  SING Y N 2  
KDX C1  C6  SING N N 3  
KDX C2  C4  SING Y N 4  
KDX C2  N7  SING N N 5  
KDX N3  C5  SING Y N 6  
KDX C4  C10 DOUB Y N 7  
KDX C4  C5  SING Y N 8  
KDX C5  C12 DOUB Y N 9  
KDX C6  N8  SING N N 10 
KDX C6  O11 DOUB N N 11 
KDX N7  C9  DOUB N N 12 
KDX N8  C9  SING N N 13 
KDX C10 O13 SING N N 14 
KDX C10 C15 SING Y N 15 
KDX C12 C14 SING Y N 16 
KDX O13 C16 SING N N 17 
KDX C14 C15 DOUB Y N 18 
KDX N3  H1  SING N N 19 
KDX C15 H2  SING N N 20 
KDX N8  H3  SING N N 21 
KDX C9  H4  SING N N 22 
KDX C12 H5  SING N N 23 
KDX C14 H6  SING N N 24 
KDX C16 H7  SING N N 25 
KDX C16 H8  SING N N 26 
KDX C16 H9  SING N N 27 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
KDX SMILES           ACDLabs              12.01 "COc1cccc2[NH]c3c(N=CNC3=O)c21"                                                              
KDX InChI            InChI                1.03  "InChI=1S/C11H9N3O2/c1-16-7-4-2-3-6-8(7)9-10(14-6)11(15)13-5-12-9/h2-5,14H,1H3,(H,12,13,15)" 
KDX InChIKey         InChI                1.03  LQIHYZDCTRTCLG-UHFFFAOYSA-N                                                                  
KDX SMILES_CANONICAL CACTVS               3.385 "COc1cccc2[nH]c3C(=O)NC=Nc3c12"                                                              
KDX SMILES           CACTVS               3.385 "COc1cccc2[nH]c3C(=O)NC=Nc3c12"                                                              
KDX SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "COc1cccc2c1c3c([nH]2)C(=O)NC=N3"                                                            
KDX SMILES           "OpenEye OEToolkits" 2.0.7 "COc1cccc2c1c3c([nH]2)C(=O)NC=N3"                                                            
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
KDX "SYSTEMATIC NAME" ACDLabs              12.01 "9-methoxy-3,5-dihydro-4H-pyrimido[5,4-b]indol-4-one" 
KDX "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "9-methoxy-3,5-dihydropyrimido[5,4-b]indol-4-one"     
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
KDX "Create component" 2022-02-03 RCSB 
KDX "Initial release"  2022-10-12 RCSB 
# 
