data_ODX
# 
_chem_comp.id                                    ODX 
_chem_comp.name                                  "2-(3-chloro-5-{[(1S,2S)-2-hydroxycyclopentyl]amino}phenyl)-N-(4-methylpyridin-3-yl)acetamide" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C19 H22 Cl N3 O2" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-08-17 
_chem_comp.pdbx_modified_date                    2023-11-03 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        359.850 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     ODX 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        7GFK 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
ODX N1  N1  N  0 1 N N N N N N 7.246  -0.807 20.618 3.680  0.173  1.057  N1  ODX 1  
ODX C4  C1  C  0 1 Y N N N N N 6.982  -0.091 18.293 4.061  -1.499 -0.652 C4  ODX 2  
ODX C5  C2  C  0 1 Y N N N N N 6.569  -0.070 19.625 4.553  -0.554 0.239  C5  ODX 3  
ODX C6  C3  C  0 1 N N N N N N 8.447  -0.446 21.112 2.399  0.355  0.681  C6  ODX 4  
ODX C7  C4  C  0 1 N N N N N N 9.105  -1.496 21.983 1.427  1.026  1.617  C7  ODX 5  
ODX C8  C5  C  0 1 Y N N N N N 9.861  -0.840 23.111 0.072  1.106  0.962  C8  ODX 6  
ODX C10 C6  C  0 1 Y N N N N N 11.821 0.249  23.938 -1.501 2.283  -0.412 C10 ODX 7  
ODX C13 C7  C  0 1 N N S N N N 7.906  -0.010 26.920 -4.324 -0.802 0.058  C13 ODX 8  
ODX C15 C8  C  0 1 N N N N N N 6.275  0.221  28.729 -5.222 -2.550 -1.439 C15 ODX 9  
ODX C17 C9  C  0 1 N N S N N N 6.858  1.050  26.529 -5.333 -1.687 0.819  C17 ODX 10 
ODX CL  CL1 CL 0 0 N N N N N N 13.482 0.709  23.710 -1.915 3.669  -1.372 CL  ODX 11 
ODX C9  C10 C  0 1 Y N N N N N 11.172 -0.423 22.924 -0.258 2.206  0.192  C9  ODX 12 
ODX C11 C11 C  0 1 Y N N N N N 11.205 0.530  25.142 -2.416 1.260  -0.246 C11 ODX 13 
ODX C12 C12 C  0 1 Y N N N N N 9.896  0.099  25.340 -2.084 0.152  0.522  C12 ODX 14 
ODX N2  N2  N  0 1 N N N N N N 9.262  0.372  26.550 -3.005 -0.884 0.692  N2  ODX 15 
ODX O1  O1  O  0 1 N N N N N N 6.506  0.981  25.147 -6.111 -0.897 1.720  O1  ODX 16 
ODX C16 C13 C  0 1 N N N N N N 5.671  0.690  27.411 -6.230 -2.283 -0.294 C16 ODX 17 
ODX C14 C14 C  0 1 N N N N N N 7.730  -0.152 28.439 -4.254 -1.350 -1.378 C14 ODX 18 
ODX C18 C15 C  0 1 Y N N N N N 9.236  -0.589 24.326 -0.835 0.078  1.127  C18 ODX 19 
ODX O   O2  O  0 1 N N N N N N 8.983  0.637  20.877 2.028  -0.021 -0.411 O   ODX 20 
ODX C1  C16 C  0 1 Y N N N N N 5.477  0.736  19.980 5.928  -0.340 0.306  C1  ODX 21 
ODX C   C17 C  0 1 N N N N N N 5.021  0.877  21.409 6.505  0.675  1.259  C   ODX 22 
ODX N   N3  N  0 1 Y N N N N N 6.388  0.613  17.327 4.880  -2.188 -1.421 N   ODX 23 
ODX C3  C18 C  0 1 Y N N N N N 5.333  1.362  17.675 6.187  -2.013 -1.377 C3  ODX 24 
ODX C2  C19 C  0 1 Y N N N N N 4.853  1.450  18.965 6.751  -1.083 -0.523 C2  ODX 25 
ODX H1  H1  H  0 1 N N N N N N 6.815  -1.637 20.973 3.997  0.542  1.896  H1  ODX 26 
ODX H2  H2  H  0 1 N N N N N N 7.827  -0.710 18.029 2.997  -1.673 -0.712 H2  ODX 27 
ODX H3  H3  H  0 1 N N N N N N 8.332  -2.158 22.401 1.352  0.448  2.538  H3  ODX 28 
ODX H4  H4  H  0 1 N N N N N N 9.804  -2.088 21.373 1.780  2.031  1.847  H4  ODX 29 
ODX H5  H5  H  0 1 N N N N N N 7.641  -0.964 26.441 -4.669 0.232  0.047  H5  ODX 30 
ODX H6  H6  H  0 1 N N N N N N 6.232  1.029  29.474 -4.686 -3.483 -1.266 H6  ODX 31 
ODX H7  H7  H  0 1 N N N N N N 5.727  -0.655 29.106 -5.736 -2.579 -2.401 H7  ODX 32 
ODX H8  H8  H  0 1 N N N N N N 7.230  2.051  26.795 -4.814 -2.481 1.357  H8  ODX 33 
ODX H9  H9  H  0 1 N N N N N N 11.679 -0.623 21.992 0.455  3.006  0.062  H9  ODX 34 
ODX H10 H10 H  0 1 N N N N N N 11.729 1.073  25.915 -3.387 1.322  -0.714 H10 ODX 35 
ODX H11 H11 H  0 1 N N N N N N 9.848  -0.037 27.249 -2.773 -1.658 1.229  H11 ODX 36 
ODX H12 H12 H  0 1 N N N N N N 5.860  1.649  24.951 -6.762 -1.403 2.225  H12 ODX 37 
ODX H13 H13 H  0 1 N N N N N N 5.030  1.570  27.572 -6.988 -1.564 -0.605 H13 ODX 38 
ODX H14 H14 H  0 1 N N N N N N 5.079  -0.115 26.951 -6.692 -3.213 0.038  H14 ODX 39 
ODX H15 H15 H  0 1 N N N N N N 7.929  -1.187 28.752 -4.564 -0.583 -2.086 H15 ODX 40 
ODX H16 H16 H  0 1 N N N N N N 8.412  0.529  28.969 -3.239 -1.678 -1.603 H16 ODX 41 
ODX H17 H17 H  0 1 N N N N N N 8.225  -0.932 24.486 -0.574 -0.783 1.724  H17 ODX 42 
ODX H18 H18 H  0 1 N N N N N N 4.256  0.117  21.627 6.722  0.195  2.213  H18 ODX 43 
ODX H19 H19 H  0 1 N N N N N N 5.879  0.737  22.083 7.425  1.083  0.841  H19 ODX 44 
ODX H20 H20 H  0 1 N N N N N N 4.595  1.880  21.561 5.787  1.480  1.411  H20 ODX 45 
ODX H21 H21 H  0 1 N N N N N N 4.831  1.927  16.904 6.824  -2.598 -2.023 H21 ODX 46 
ODX H22 H22 H  0 1 N N N N N N 3.997  2.071  19.185 7.822  -0.947 -0.495 H22 ODX 47 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
ODX N   C3  DOUB Y N 1  
ODX N   C4  SING Y N 2  
ODX C3  C2  SING Y N 3  
ODX C4  C5  DOUB Y N 4  
ODX C2  C1  DOUB Y N 5  
ODX C5  C1  SING Y N 6  
ODX C5  N1  SING N N 7  
ODX C1  C   SING N N 8  
ODX N1  C6  SING N N 9  
ODX O   C6  DOUB N N 10 
ODX C6  C7  SING N N 11 
ODX C7  C8  SING N N 12 
ODX C9  C8  DOUB Y N 13 
ODX C9  C10 SING Y N 14 
ODX C8  C18 SING Y N 15 
ODX CL  C10 SING N N 16 
ODX C10 C11 DOUB Y N 17 
ODX C18 C12 DOUB Y N 18 
ODX C11 C12 SING Y N 19 
ODX O1  C17 SING N N 20 
ODX C12 N2  SING N N 21 
ODX C17 C13 SING N N 22 
ODX C17 C16 SING N N 23 
ODX N2  C13 SING N N 24 
ODX C13 C14 SING N N 25 
ODX C16 C15 SING N N 26 
ODX C14 C15 SING N N 27 
ODX N1  H1  SING N N 28 
ODX C4  H2  SING N N 29 
ODX C7  H3  SING N N 30 
ODX C7  H4  SING N N 31 
ODX C13 H5  SING N N 32 
ODX C15 H6  SING N N 33 
ODX C15 H7  SING N N 34 
ODX C17 H8  SING N N 35 
ODX C9  H9  SING N N 36 
ODX C11 H10 SING N N 37 
ODX N2  H11 SING N N 38 
ODX O1  H12 SING N N 39 
ODX C16 H13 SING N N 40 
ODX C16 H14 SING N N 41 
ODX C14 H15 SING N N 42 
ODX C14 H16 SING N N 43 
ODX C18 H17 SING N N 44 
ODX C   H18 SING N N 45 
ODX C   H19 SING N N 46 
ODX C   H20 SING N N 47 
ODX C3  H21 SING N N 48 
ODX C2  H22 SING N N 49 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
ODX SMILES           ACDLabs              12.01 "O=C(Nc1cnccc1C)Cc1cc(NC2CCCC2O)cc(Cl)c1"                                                                                                                        
ODX InChI            InChI                1.06  "InChI=1S/C19H22ClN3O2/c1-12-5-6-21-11-17(12)23-19(25)9-13-7-14(20)10-15(8-13)22-16-3-2-4-18(16)24/h5-8,10-11,16,18,22,24H,2-4,9H2,1H3,(H,23,25)/t16-,18-/m0/s1" 
ODX InChIKey         InChI                1.06  SXRYZSBUMPNSOT-WMZOPIPTSA-N                                                                                                                                      
ODX SMILES_CANONICAL CACTVS               3.385 "Cc1ccncc1NC(=O)Cc2cc(Cl)cc(N[C@H]3CCC[C@@H]3O)c2"                                                                                                               
ODX SMILES           CACTVS               3.385 "Cc1ccncc1NC(=O)Cc2cc(Cl)cc(N[CH]3CCC[CH]3O)c2"                                                                                                                  
ODX SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "Cc1ccncc1NC(=O)Cc2cc(cc(c2)Cl)N[C@H]3CCC[C@@H]3O"                                                                                                               
ODX SMILES           "OpenEye OEToolkits" 2.0.7 "Cc1ccncc1NC(=O)Cc2cc(cc(c2)Cl)NC3CCCC3O"                                                                                                                        
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
ODX "SYSTEMATIC NAME" ACDLabs              12.01 "2-(3-chloro-5-{[(1S,2S)-2-hydroxycyclopentyl]amino}phenyl)-N-(4-methylpyridin-3-yl)acetamide"               
ODX "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "2-[3-chloranyl-5-[[(1~{S},2~{S})-2-oxidanylcyclopentyl]amino]phenyl]-~{N}-(4-methylpyridin-3-yl)ethanamide" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
ODX "Create component" 2023-08-17 RCSB 
ODX "Initial release"  2023-11-08 RCSB 
# 
