data_VDX
#

_chem_comp.id                                   VDX
_chem_comp.name                                 "5-{2-[1-(5-HYDROXY-1,5-DIMETHYL-HEXYL)-7A-METHYL-OCTAHYDRO-INDEN-4-YLIDENE]-ETHYLIDENE}-4-METHYLENE-CYCLOHEXANE-1,3-DIOL"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C27 H44 O3"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        "1,25 DIHYDROXY VITAMIN D3"
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    1999-11-03
_chem_comp.pdbx_modified_date                   2021-03-13
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       416.636
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    VDX
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       ?
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       1DB1
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 PDBJ
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
VDX  O2    O2    O  0  1  N  N  N  17.029  18.071  34.819  -1.260   1.799  -7.708  O2    VDX   1  
VDX  O3    O3    O  0  1  N  N  N   4.489  26.946  35.054  -2.818   0.819   6.766  O3    VDX   2  
VDX  C1    C1    C  0  1  N  N  S  14.139  17.953  35.755  -2.455  -0.546  -5.027  C1    VDX   3  
VDX  C2    C2    C  0  1  N  N  N  14.879  16.893  34.895  -2.317   0.041  -6.435  C2    VDX   4  
VDX  C3    C3    C  0  1  N  N  R  15.992  17.534  33.962  -1.276   1.161  -6.429  C3    VDX   5  
VDX  C4    C4    C  0  1  N  N  N  15.368  18.672  33.049   0.109   0.580  -6.132  C4    VDX   6  
VDX  C5    C5    C  0  1  N  N  N  14.622  19.724  33.864   0.050  -0.138  -4.799  C5    VDX   7  
VDX  C6    C6    C  0  1  N  N  N  14.797  21.120  33.792   0.998   0.042  -3.856  C6    VDX   8  
VDX  C7    C7    C  0  1  N  N  N  14.174  22.286  34.514   0.906  -0.670  -2.580  C7    VDX   9  
VDX  C8    C8    C  0  1  N  N  N  13.966  23.488  34.042   1.842  -0.492  -1.648  C8    VDX  10  
VDX  C9    C9    C  0  1  N  N  N  14.354  23.927  32.544   3.030   0.437  -1.853  C9    VDX  11  
VDX  C10   C10   C  0  1  N  N  N  13.602  19.075  34.828  -1.092  -1.050  -4.585  C10   VDX  12  
VDX  C11   C11   C  0  1  N  N  N  13.088  24.490  31.671   3.181   1.389  -0.668  C11   VDX  13  
VDX  C12   C12   C  0  1  N  N  N  12.147  25.443  32.564   3.123   0.642   0.674  C12   VDX  14  
VDX  C13   C13   C  0  1  N  N  R  11.753  24.897  34.070   1.801  -0.074   0.756  C13   VDX  15  
VDX  C14   C14   C  0  1  N  N  S  13.148  24.538  34.777   1.801  -1.194  -0.324  C14   VDX  16  
VDX  C15   C15   C  0  1  N  N  N  12.661  24.266  36.350   0.510  -1.941   0.018  C15   VDX  17  
VDX  C16   C16   C  0  1  N  N  N  11.429  25.231  36.497   0.550  -2.003   1.571  C16   VDX  18  
VDX  C17   C17   C  0  1  N  N  R  11.276  25.934  35.106   1.445  -0.822   2.031  C17   VDX  19  
VDX  C18   C18   C  0  1  N  N  N  10.769  23.570  33.779   0.674   0.903   0.415  C18   VDX  20  
VDX  C19   C19   C  0  1  N  N  N  12.291  19.455  34.852  -0.938  -2.250  -4.026  C19   VDX  21  
VDX  C20   C20   C  0  1  N  N  R   9.849  26.546  34.726   0.672   0.090   2.985  C20   VDX  22  
VDX  C21   C21   C  0  1  N  N  N   9.804  27.956  35.482   1.548   1.283   3.370  C21   VDX  23  
VDX  C22   C22   C  0  1  N  N  N   8.575  25.824  35.268   0.293  -0.692   4.244  C22   VDX  24  
VDX  C23   C23   C  0  1  N  N  N   7.331  26.060  34.405  -0.479   0.220   5.198  C23   VDX  25  
VDX  C24   C24   C  0  1  N  N  N   6.152  25.266  34.672  -0.858  -0.561   6.457  C24   VDX  26  
VDX  C25   C25   C  0  1  N  N  N   4.775  25.776  34.336  -1.632   0.351   7.411  C25   VDX  27  
VDX  C26   C26   C  0  1  N  N  N   4.701  26.010  32.842  -2.010  -0.430   8.670  C26   VDX  28  
VDX  C27   C27   C  0  1  N  N  N   3.668  24.730  34.723  -0.756   1.545   7.796  C27   VDX  29  
VDX  O1    O1    O  0  1  N  N  N  13.119  17.359  36.620  -2.916   0.463  -4.127  O1    VDX  30  
VDX  HO2   HO2   H  0  1  N  N  N  17.695  18.454  34.260  -0.596   2.501  -7.662  HO2   VDX  31  
VDX  HO3   HO3   H  0  1  N  N  N   3.620  27.267  34.842  -3.340   0.037   6.540  HO3   VDX  32  
VDX  H11   1H1   H  0  1  N  N  N  14.859  18.417  36.467  -3.164  -1.374  -5.043  H11   VDX  33  
VDX  H21   1H2   H  0  1  N  N  N  15.307  16.086  35.534  -3.279   0.441  -6.756  H21   VDX  34  
VDX  H22   2H2   H  0  1  N  N  N  14.158  16.285  34.299  -2.003  -0.741  -7.125  H22   VDX  35  
VDX  H31   1H3   H  0  1  N  N  N  16.419  16.761  33.280  -1.535   1.892  -5.663  H31   VDX  36  
VDX  H41   1H4   H  0  1  N  N  N  16.145  19.140  32.402   0.842   1.386  -6.083  H41   VDX  37  
VDX  H42   2H4   H  0  1  N  N  N  14.714  18.239  32.256   0.388  -0.122  -6.917  H42   VDX  38  
VDX  H61   1H6   H  0  1  N  N  N  15.563  21.340  33.029   1.824   0.711  -4.042  H61   VDX  39  
VDX  H71   1H7   H  0  1  N  N  N  13.812  22.254  35.555   0.079  -1.340  -2.394  H71   VDX  40  
VDX  H91   1H9   H  0  1  N  N  N  15.184  24.670  32.555   3.938  -0.157  -1.954  H91   VDX  41  
VDX  H92   2H9   H  0  1  N  N  N  14.859  23.090  32.008   2.878   1.017  -2.763  H92   VDX  42  
VDX  H111  1H11  H  0  0  N  N  N  13.426  25.002  30.740   4.138   1.905  -0.747  H111  VDX  43  
VDX  H112  2H11  H  0  0  N  N  N  12.507  23.659  31.206   2.378   2.125  -0.700  H112  VDX  44  
VDX  H121  1H12  H  0  0  N  N  N  12.607  26.455  32.642   3.933  -0.085   0.727  H121  VDX  45  
VDX  H122  2H12  H  0  0  N  N  N  11.216  25.684  31.999   3.209   1.353   1.496  H122  VDX  46  
VDX  H141  1H14  H  0  0  N  N  N  13.932  25.330  34.753   2.667  -1.846  -0.206  H141  VDX  47  
VDX  H151  1H15  H  0  0  N  N  N  12.452  23.199  36.598   0.519  -2.944  -0.408  H151  VDX  48  
VDX  H152  2H15  H  0  0  N  N  N  13.457  24.403  37.117  -0.361  -1.383  -0.323  H152  VDX  49  
VDX  H161  1H16  H  0  0  N  N  N  10.500  24.721  36.845   0.982  -2.949   1.897  H161  VDX  50  
VDX  H162  2H16  H  0  0  N  N  N  11.517  25.942  37.350  -0.455  -1.890   1.976  H162  VDX  51  
VDX  H171  1H17  H  0  0  N  N  N  11.888  26.865  35.133   2.347  -1.197   2.514  H171  VDX  52  
VDX  H181  1H18  H  0  0  N  N  N  10.502  23.201  34.796   0.826   1.296  -0.589  H181  VDX  53  
VDX  H182  2H18  H  0  0  N  N  N   9.891  23.785  33.126  -0.282   0.384   0.461  H182  VDX  54  
VDX  H183  3H18  H  0  0  N  N  N  11.225  22.797  33.117   0.677   1.724   1.131  H183  VDX  55  
VDX  H191  1H19  H  0  0  N  N  N  11.563  18.992  35.539   0.042  -2.583  -3.722  H191  VDX  56  
VDX  H192  2H19  H  0  0  N  N  N  11.909  20.252  34.192  -1.795  -2.891  -3.879  H192  VDX  57  
VDX  H201  1H20  H  0  0  N  N  N   9.797  26.508  33.612  -0.232   0.446   2.492  H201  VDX  58  
VDX  H211  1H21  H  0  0  N  N  N   8.808  28.382  35.216   2.452   0.927   3.862  H211  VDX  59  
VDX  H212  2H21  H  0  0  N  N  N   9.993  27.890  36.578   1.818   1.841   2.473  H212  VDX  60  
VDX  H213  3H21  H  0  0  N  N  N  10.663  28.626  35.247   0.997   1.934   4.049  H213  VDX  61  
VDX  H221  1H22  H  0  0  N  N  N   8.764  24.733  35.400  -0.330  -1.542   3.969  H221  VDX  62  
VDX  H222  2H22  H  0  0  N  N  N   8.380  26.107  36.328   1.198  -1.048   4.736  H222  VDX  63  
VDX  H231  1H23  H  0  0  N  N  N   7.059  27.140  34.446   0.144   1.071   5.472  H231  VDX  64  
VDX  H232  2H23  H  0  0  N  N  N   7.607  25.950  33.330  -1.384   0.577   4.706  H232  VDX  65  
VDX  H241  1H24  H  0  0  N  N  N   6.283  24.275  34.176  -1.482  -1.411   6.182  H241  VDX  66  
VDX  H242  2H24  H  0  0  N  N  N   6.162  24.985  35.751   0.045  -0.918   6.949  H242  VDX  67  
VDX  H261  1H26  H  0  0  N  N  N   4.928  25.079  32.271  -2.561   0.220   9.350  H261  VDX  68  
VDX  H262  2H26  H  0  0  N  N  N   3.716  26.440  32.544  -2.634  -1.280   8.396  H262  VDX  69  
VDX  H263  3H26  H  0  0  N  N  N   5.360  26.852  32.527  -1.106  -0.787   9.162  H263  VDX  70  
VDX  H271  1H27  H  0  0  N  N  N   3.895  23.799  34.152   0.148   1.188   8.288  H271  VDX  71  
VDX  H272  2H27  H  0  0  N  N  N   3.584  24.563  35.822  -0.486   2.102   6.899  H272  VDX  72  
VDX  H273  3H27  H  0  0  N  N  N   2.630  25.105  34.559  -1.306   2.196   8.476  H273  VDX  73  
VDX  HO1   HO1   H  0  1  N  N  N  12.666  18.007  37.146  -2.988   0.050  -3.256  HO1   VDX  74  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
VDX  O2   C3    SING  N  N   1  
VDX  O2   HO2   SING  N  N   2  
VDX  O3   C25   SING  N  N   3  
VDX  O3   HO3   SING  N  N   4  
VDX  C1   C2    SING  N  N   5  
VDX  C1   C10   SING  N  N   6  
VDX  C1   O1    SING  N  N   7  
VDX  C1   H11   SING  N  N   8  
VDX  C2   C3    SING  N  N   9  
VDX  C2   H21   SING  N  N  10  
VDX  C2   H22   SING  N  N  11  
VDX  C3   C4    SING  N  N  12  
VDX  C3   H31   SING  N  N  13  
VDX  C4   C5    SING  N  N  14  
VDX  C4   H41   SING  N  N  15  
VDX  C4   H42   SING  N  N  16  
VDX  C5   C6    DOUB  N  Z  17  
VDX  C5   C10   SING  N  N  18  
VDX  C6   C7    SING  N  N  19  
VDX  C6   H61   SING  N  N  20  
VDX  C7   C8    DOUB  N  E  21  
VDX  C7   H71   SING  N  N  22  
VDX  C8   C9    SING  N  N  23  
VDX  C8   C14   SING  N  N  24  
VDX  C9   C11   SING  N  N  25  
VDX  C9   H91   SING  N  N  26  
VDX  C9   H92   SING  N  N  27  
VDX  C10  C19   DOUB  N  N  28  
VDX  C11  C12   SING  N  N  29  
VDX  C11  H111  SING  N  N  30  
VDX  C11  H112  SING  N  N  31  
VDX  C12  C13   SING  N  N  32  
VDX  C12  H121  SING  N  N  33  
VDX  C12  H122  SING  N  N  34  
VDX  C13  C14   SING  N  N  35  
VDX  C13  C17   SING  N  N  36  
VDX  C13  C18   SING  N  N  37  
VDX  C14  C15   SING  N  N  38  
VDX  C14  H141  SING  N  N  39  
VDX  C15  C16   SING  N  N  40  
VDX  C15  H151  SING  N  N  41  
VDX  C15  H152  SING  N  N  42  
VDX  C16  C17   SING  N  N  43  
VDX  C16  H161  SING  N  N  44  
VDX  C16  H162  SING  N  N  45  
VDX  C17  C20   SING  N  N  46  
VDX  C17  H171  SING  N  N  47  
VDX  C18  H181  SING  N  N  48  
VDX  C18  H182  SING  N  N  49  
VDX  C18  H183  SING  N  N  50  
VDX  C19  H191  SING  N  N  51  
VDX  C19  H192  SING  N  N  52  
VDX  C20  C21   SING  N  N  53  
VDX  C20  C22   SING  N  N  54  
VDX  C20  H201  SING  N  N  55  
VDX  C21  H211  SING  N  N  56  
VDX  C21  H212  SING  N  N  57  
VDX  C21  H213  SING  N  N  58  
VDX  C22  C23   SING  N  N  59  
VDX  C22  H221  SING  N  N  60  
VDX  C22  H222  SING  N  N  61  
VDX  C23  C24   SING  N  N  62  
VDX  C23  H231  SING  N  N  63  
VDX  C23  H232  SING  N  N  64  
VDX  C24  C25   SING  N  N  65  
VDX  C24  H241  SING  N  N  66  
VDX  C24  H242  SING  N  N  67  
VDX  C25  C26   SING  N  N  68  
VDX  C25  C27   SING  N  N  69  
VDX  C26  H261  SING  N  N  70  
VDX  C26  H262  SING  N  N  71  
VDX  C26  H263  SING  N  N  72  
VDX  C27  H271  SING  N  N  73  
VDX  C27  H272  SING  N  N  74  
VDX  C27  H273  SING  N  N  75  
VDX  O1   HO1   SING  N  N  76  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
VDX  SMILES            ACDLabs               10.04  "OC3C(=C)/C(=C\C=C1/CCCC2(C)C(C(C)CCCC(O)(C)C)CCC12)CC(O)C3"  
VDX  SMILES_CANONICAL  CACTVS                3.341  "C[C@H](CCCC(C)(C)O)[C@H]1CC[C@H]2C(/CCC[C@]12C)=C/C=C3/C[C@@H](O)C[C@H](O)C3=C"  
VDX  SMILES            CACTVS                3.341  "C[CH](CCCC(C)(C)O)[CH]1CC[CH]2C(CCC[C]12C)=CC=C3C[CH](O)C[CH](O)C3=C"  
VDX  SMILES_CANONICAL  "OpenEye OEToolkits"  1.5.0  "C[C@H](CCCC(C)(C)O)[C@H]1CC[C@@H]\2[C@@]1(CCC/C2=C\C=C/3\C[C@H](C[C@@H](C3=C)O)O)C"  
VDX  SMILES            "OpenEye OEToolkits"  1.5.0  "CC(CCCC(C)(C)O)C1CCC2C1(CCCC2=CC=C3CC(CC(C3=C)O)O)C"  
VDX  InChI             InChI                 1.03   "InChI=1S/C27H44O3/c1-18(8-6-14-26(3,4)30)23-12-13-24-20(9-7-15-27(23,24)5)10-11-21-16-22(28)17-25(29)19(21)2/h10-11,18,22-25,28-30H,2,6-9,12-17H2,1,3-5H3/b20-10+,21-11-/t18-,22-,23-,24+,25+,27-/m1/s1"  
VDX  InChIKey          InChI                 1.03   GMRQFYUYWCNGIN-NKMMMXOESA-N  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
VDX  "SYSTEMATIC NAME"  ACDLabs               10.04  "(1S,3R,5Z,7E,14beta,17alpha)-9,10-secocholesta-5,7,10-triene-1,3,25-triol"  
VDX  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.5.0  "(1R,3S,5Z)-5-[(2E)-2-[(1R,3aS,7aR)-1-[(2R)-6-hydroxy-6-methyl-heptan-2-yl]-7a-methyl-2,3,3a,5,6,7-hexahydro-1H-inden-4-ylidene]ethylidene]-4-methylidene-cyclohexane-1,3-diol"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
VDX  "Create component"   1999-11-03  PDBJ  
VDX  "Modify descriptor"  2011-06-04  RCSB  
VDX  "Modify synonyms"    2021-03-13  RCSB  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     VDX
_pdbx_chem_comp_synonyms.name        "1,25 DIHYDROXY VITAMIN D3"
_pdbx_chem_comp_synonyms.provenance  PDB
_pdbx_chem_comp_synonyms.type        ?
##
