data_1SY
# 
_chem_comp.id                                    1SY 
_chem_comp.name                                  cGAMP 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C20 H24 N10 O13 P2" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         
;2',3' cGAMP; c-GMP-AMP; c[G(2',5')pA(3',5')p]
;
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2013-05-24 
_chem_comp.pdbx_modified_date                    2020-05-26 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        674.411 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     1SY 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        4KSY 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
1SY C2    C2    C 0 1 Y N N 52.285 8.645  -17.445 7.555  -0.917 0.622  C2    CGA 1  
1SY N01   N01   N 0 1 N N N 49.671 10.964 -18.686 8.057  2.550  -0.093 N01   CGA 2  
1SY C6    C6    C 0 1 Y N N 50.424 9.721  -18.417 7.450  1.313  0.032  C6    CGA 3  
1SY N1    N1    N 0 1 Y N N 51.572 9.746  -17.722 8.127  0.268  0.498  N1    CGA 4  
1SY N3    N3    N 0 1 Y N N 51.861 7.466  -17.865 6.300  -1.133 0.291  N3    CGA 5  
1SY C4    C4    C 0 1 Y N N 50.707 7.322  -18.571 5.544  -0.148 -0.184 C4    CGA 6  
1SY C5    C5    C 0 1 Y N N 49.932 8.463  -18.884 6.104  1.132  -0.329 C5    CGA 7  
1SY N7    N7    N 0 1 Y N N 48.846 8.028  -19.599 5.135  1.938  -0.825 N7    CGA 8  
1SY C8    C8    C 0 1 Y N N 48.904 6.680  -19.752 4.042  1.250  -0.990 C8    CGA 9  
1SY N9    N9    N 0 1 Y N N 50.021 6.278  -19.141 4.244  -0.043 -0.608 N9    CGA 10 
1SY "C1'" "C1'" C 0 1 N N R 50.682 5.019  -18.928 3.254  -1.122 -0.645 "C1'" CGA 11 
1SY "C2'" "C2'" C 0 1 N N R 50.380 4.522  -17.603 2.577  -1.255 0.728  "C2'" CGA 12 
1SY "O2'" "O2'" O 0 1 N N N 51.440 3.630  -17.229 3.124  -2.361 1.447  "O2'" CGA 13 
1SY "C3'" "C3'" C 0 1 N N S 49.138 3.764  -17.764 1.093  -1.515 0.402  "C3'" CGA 14 
1SY "C4'" "C4'" C 0 1 N N R 49.370 3.094  -19.052 0.956  -1.196 -1.096 "C4'" CGA 15 
1SY C16   C16   C 0 1 N N N 48.077 2.813  -19.760 -0.034 -0.048 -1.296 C16   CGA 16 
1SY O17   O17   O 0 1 N N N 47.351 4.005  -19.842 -0.998 -0.416 -2.283 O17   CGA 17 
1SY P18   P18   P 0 1 N N N 45.831 3.976  -20.336 -2.326 0.434  -2.600 P18   CGA 18 
1SY O19   O19   O 0 1 N N N 45.210 5.359  -20.429 -2.014 2.003  -2.414 O19   CGA 19 
1SY O20   O20   O 0 1 N N N 44.941 3.030  -19.356 -3.507 -0.001 -1.594 O20   CGA 20 
1SY C21   C21   C 0 1 N N R 45.238 3.102  -17.973 -3.266 -0.650 -0.354 C21   CGA 21 
1SY C22   C22   C 0 1 N N R 45.225 1.757  -17.318 -3.912 -2.059 -0.330 C22   CGA 22 
1SY O23   O23   O 0 1 N N N 44.203 0.940  -17.865 -5.124 -2.066 -1.082 O23   CGA 23 
1SY C24   C24   C 0 1 N N R 44.873 2.031  -15.933 -4.203 -2.261 1.175  C24   CGA 24 
1SY C25   C25   C 0 1 N N N 46.069 2.169  -15.026 -2.988 -2.905 1.844  C25   CGA 25 
1SY O26   O26   O 0 1 N N N 46.821 3.329  -15.275 -1.793 -2.490 1.184  O26   CGA 26 
1SY P27   P27   P 0 1 N N N 48.421 3.298  -15.237 -0.712 -3.505 0.558  P27   CGA 27 
1SY O28   O28   O 0 1 N N N 49.055 2.793  -16.676 0.761  -2.875 0.671  O28   CGA 28 
1SY O29   O29   O 0 1 N N N 48.935 4.647  -14.857 -0.754 -4.782 1.307  O29   CGA 29 
1SY O30   O30   O 0 1 N N N 48.867 2.315  -14.223 -1.066 -3.783 -0.988 O30   CGA 30 
1SY O31   O31   O 0 1 N N N 44.051 3.225  -15.940 -4.423 -0.955 1.724  O31   CGA 31 
1SY C32   C32   C 0 1 N N R 44.157 3.838  -17.254 -3.994 0.060  0.807  C32   CGA 32 
1SY N33   N33   N 0 1 Y N N 44.435 5.171  -17.082 -3.085 0.986  1.476  N33   CGA 33 
1SY C34   C34   C 0 1 Y N N 45.479 5.722  -16.498 -2.342 0.724  2.589  C34   CGA 34 
1SY N35   N35   N 0 1 Y N N 45.348 7.054  -16.528 -1.646 1.778  2.908  N35   CGA 35 
1SY C36   C36   C 0 1 Y N N 43.590 6.164  -17.482 -2.820 2.267  1.099  C36   CGA 36 
1SY C37   C37   C 0 1 Y N N 44.175 7.370  -17.126 -1.906 2.766  2.020  C37   CGA 37 
1SY C38   C38   C 0 1 N N N 43.486 8.666  -17.444 -1.440 4.146  1.853  C38   CGA 38 
1SY N39   N39   N 0 1 N N N 42.231 8.640  -18.103 -1.914 4.863  0.822  N39   CGA 39 
1SY C40   C40   C 0 1 N N N 41.638 7.385  -18.456 -2.779 4.352  -0.028 C40   CGA 40 
1SY N41   N41   N 0 1 N N N 40.375 7.354  -19.117 -3.233 5.135  -1.055 N41   CGA 41 
1SY N42   N42   N 0 1 N N N 42.319 6.133  -18.156 -3.250 3.083  0.084  N42   CGA 42 
1SY O43   O43   O 0 1 N N N 44.002 9.763  -17.139 -0.638 4.632  2.634  O43   CGA 43 
1SY O44   O44   O 0 1 N N N 45.826 3.332  -21.655 -2.754 0.178  -3.994 O44   CGA 44 
1SY "O4'" "O4'" O 0 1 N N N 50.154 4.044  -19.820 2.236  -0.816 -1.598 "O4'" CGA 45 
1SY H1    H1    H 0 1 N N N 53.203 8.721  -16.881 8.141  -1.739 1.004  H1    CGA 46 
1SY H2    H2    H 0 1 N N N 50.153 11.741 -18.281 8.987  2.662  0.160  H2    CGA 47 
1SY H3    H3    H 0 1 N N N 49.593 11.099 -19.674 7.553  3.305  -0.434 H3    CGA 48 
1SY H4    H4    H 0 1 N N N 48.188 6.056  -20.266 3.113  1.646  -1.371 H4    CGA 49 
1SY H5    H5    H 0 1 N N N 51.769 5.124  -19.061 3.739  -2.060 -0.910 H5    CGA 50 
1SY H6    H6    H 0 1 N N N 50.259 5.342  -16.879 2.686  -0.335 1.299  H6    CGA 51 
1SY H7    H7    H 0 1 N N N 51.272 3.284  -16.360 4.070  -2.282 1.630  H7    CGA 52 
1SY H8    H8    H 0 1 N N N 48.257 4.421  -17.798 0.461  -0.851 0.993  H8    CGA 53 
1SY H9    H9    H 0 1 N N N 49.929 2.158  -18.903 0.601  -2.079 -1.628 H9    CGA 54 
1SY H10   H10   H 0 1 N N N 47.500 2.065  -19.197 -0.541 0.165  -0.357 H10   CGA 55 
1SY H11   H11   H 0 1 N N N 48.282 2.433  -20.772 0.504  0.842  -1.622 H11   CGA 56 
1SY H12   H12   H 0 1 N N N 44.943 5.527  -21.325 -1.316 2.337  -2.994 H12   CGA 57 
1SY H13   H13   H 0 1 N N N 46.207 3.594  -17.801 -2.201 -0.728 -0.133 H13   CGA 58 
1SY H14   H14   H 0 1 N N N 46.214 1.280  -17.392 -3.221 -2.809 -0.697 H14   CGA 59 
1SY H15   H15   H 0 1 N N N 44.211 0.092  -17.437 -5.571 -2.923 -1.101 H15   CGA 60 
1SY H16   H16   H 0 1 N N N 44.265 1.194  -15.559 -5.088 -2.878 1.302  H16   CGA 61 
1SY H17   H17   H 0 1 N N N 45.716 2.198  -13.984 -2.953 -2.594 2.891  H17   CGA 62 
1SY H18   H18   H 0 1 N N N 46.719 1.293  -15.169 -3.077 -3.992 1.803  H18   CGA 63 
1SY H19   H19   H 0 1 N N N 49.380 2.757  -13.557 -1.939 -4.175 -1.127 H19   CGA 64 
1SY H20   H20   H 0 1 N N N 43.211 3.705  -17.799 -4.861 0.594  0.424  H20   CGA 65 
1SY H21   H21   H 0 1 N N N 46.309 5.185  -16.064 -2.331 -0.214 3.125  H21   CGA 66 
1SY H22   H22   H 0 1 N N N 39.903 8.209  -19.334 -3.879 4.780  -1.686 H22   CGA 67 
1SY H23   H23   H 0 1 N N N 39.961 6.478  -19.363 -2.909 6.044  -1.153 H23   CGA 68 
1SY H24   H24   H 0 1 N N N 41.907 5.260  -18.416 -3.887 2.747  -0.565 H24   CGA 69 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
1SY O44   P18   DOUB N N 1  
1SY O19   P18   SING N N 2  
1SY P18   O17   SING N N 3  
1SY P18   O20   SING N N 4  
1SY O17   C16   SING N N 5  
1SY "O4'" "C4'" SING N N 6  
1SY "O4'" "C1'" SING N N 7  
1SY C16   "C4'" SING N N 8  
1SY C8    N7    DOUB Y N 9  
1SY C8    N9    SING Y N 10 
1SY N7    C5    SING Y N 11 
1SY O20   C21   SING N N 12 
1SY N9    "C1'" SING N N 13 
1SY N9    C4    SING Y N 14 
1SY N41   C40   SING N N 15 
1SY "C4'" "C3'" SING N N 16 
1SY "C1'" "C2'" SING N N 17 
1SY C5    C4    DOUB Y N 18 
1SY C5    C6    SING Y N 19 
1SY N01   C6    SING N N 20 
1SY C4    N3    SING Y N 21 
1SY C40   N42   SING N N 22 
1SY C40   N39   DOUB N N 23 
1SY C6    N1    DOUB Y N 24 
1SY N42   C36   SING N N 25 
1SY N39   C38   SING N N 26 
1SY C21   C22   SING N N 27 
1SY C21   C32   SING N N 28 
1SY O23   C22   SING N N 29 
1SY N3    C2    DOUB Y N 30 
1SY "C3'" "C2'" SING N N 31 
1SY "C3'" O28   SING N N 32 
1SY N1    C2    SING Y N 33 
1SY "C2'" "O2'" SING N N 34 
1SY C36   C37   DOUB Y N 35 
1SY C36   N33   SING Y N 36 
1SY C38   O43   DOUB N N 37 
1SY C38   C37   SING N N 38 
1SY C22   C24   SING N N 39 
1SY C32   N33   SING N N 40 
1SY C32   O31   SING N N 41 
1SY C37   N35   SING Y N 42 
1SY N33   C34   SING Y N 43 
1SY O28   P27   SING N N 44 
1SY N35   C34   DOUB Y N 45 
1SY O31   C24   SING N N 46 
1SY C24   C25   SING N N 47 
1SY O26   P27   SING N N 48 
1SY O26   C25   SING N N 49 
1SY P27   O29   DOUB N N 50 
1SY P27   O30   SING N N 51 
1SY C2    H1    SING N N 52 
1SY N01   H2    SING N N 53 
1SY N01   H3    SING N N 54 
1SY C8    H4    SING N N 55 
1SY "C1'" H5    SING N N 56 
1SY "C2'" H6    SING N N 57 
1SY "O2'" H7    SING N N 58 
1SY "C3'" H8    SING N N 59 
1SY "C4'" H9    SING N N 60 
1SY C16   H10   SING N N 61 
1SY C16   H11   SING N N 62 
1SY O19   H12   SING N N 63 
1SY C21   H13   SING N N 64 
1SY C22   H14   SING N N 65 
1SY O23   H15   SING N N 66 
1SY C24   H16   SING N N 67 
1SY C25   H17   SING N N 68 
1SY C25   H18   SING N N 69 
1SY O30   H19   SING N N 70 
1SY C32   H20   SING N N 71 
1SY C34   H21   SING N N 72 
1SY N41   H22   SING N N 73 
1SY N41   H23   SING N N 74 
1SY N42   H24   SING N N 75 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
1SY SMILES           ACDLabs              12.01 "O=C7N=C(N)Nc1c7ncn1C5OC6COP(=O)(O)OC4C(OC(n2c3ncnc(N)c3nc2)C4O)COP(=O)(OC5C6O)O"                                                                                                                                                                                                              
1SY InChI            InChI                1.03  "InChI=1S/C20H24N10O13P2/c21-14-8-15(24-3-23-14)29(4-25-8)18-11(32)12-7(41-18)2-39-45(36,37)43-13-10(31)6(1-38-44(34,35)42-12)40-19(13)30-5-26-9-16(30)27-20(22)28-17(9)33/h3-7,10-13,18-19,31-32H,1-2H2,(H,34,35)(H,36,37)(H2,21,23,24)(H3,22,27,28,33)/t6-,7-,10-,11-,12-,13-,18-,19-/m1/s1" 
1SY InChIKey         InChI                1.03  XRILCFTWUCUKJR-INFSMZHSSA-N                                                                                                                                                                                                                                                                    
1SY SMILES_CANONICAL CACTVS               3.370 "NC1=NC(=O)c2ncn([C@@H]3O[C@@H]4CO[P](O)(=O)O[C@H]5[C@@H](O)[C@@H](O[C@@H]5CO[P](O)(=O)O[C@@H]3[C@@H]4O)n6cnc7c(N)ncnc67)c2N1"                                                                                                                                                                 
1SY SMILES           CACTVS               3.370 "NC1=NC(=O)c2ncn([CH]3O[CH]4CO[P](O)(=O)O[CH]5[CH](O)[CH](O[CH]5CO[P](O)(=O)O[CH]3[CH]4O)n6cnc7c(N)ncnc67)c2N1"                                                                                                                                                                                
1SY SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "c1nc(c2c(n1)n(cn2)[C@H]3[C@@H]([C@H]4[C@H](O3)COP(=O)(O[C@@H]5[C@@H]([C@@H](COP(=O)(O4)O)O[C@H]5n6cnc7c6NC(=NC7=O)N)O)O)O)N"                                                                                                                                                                  
1SY SMILES           "OpenEye OEToolkits" 1.7.6 "c1nc(c2c(n1)n(cn2)C3C(C4C(O3)COP(=O)(OC5C(C(COP(=O)(O4)O)OC5n6cnc7c6NC(=NC7=O)N)O)O)O)N"                                                                                                                                                                                                      
# 
_pdbx_chem_comp_identifier.comp_id           1SY 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           ACDLabs 
_pdbx_chem_comp_identifier.program_version   12.01 
_pdbx_chem_comp_identifier.identifier        "2-amino-9-[(2R,5R,7R,8R,10S,12aR,14R,15R,15aS,16R)-14-(6-amino-9H-purin-9-yl)-2,10,15,16-tetrahydroxy-2,10-dioxidooctahydro-12H-5,8-methanofuro[3,2-l][1,3,6,9,11,2,10]pentaoxadiphosphacyclotetradecin-7-yl]-3,9-dihydro-6H-purin-6-one" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
1SY "Create component" 2013-05-24 RCSB 
1SY "Initial release"  2013-06-12 RCSB 
1SY "Modify synonyms"  2015-07-29 RCSB 
1SY "Modify synonyms"  2020-05-26 PDBE 
# 
loop_
_pdbx_chem_comp_synonyms.ordinal 
_pdbx_chem_comp_synonyms.comp_id 
_pdbx_chem_comp_synonyms.name 
_pdbx_chem_comp_synonyms.provenance 
_pdbx_chem_comp_synonyms.type 
1 1SY 
;2',3' cGAMP
;
? ? 
2 1SY c-GMP-AMP               ? ? 
3 1SY "c[G(2',5')pA(3',5')p]" ? ? 
# 
