data_9MY
# 
_chem_comp.id                                    9MY 
_chem_comp.name                                  "(2S)-2-cyclohexyl-2-{5,6-difluoro-2-[(R)-methoxy(phenyl)methyl]-1H-benzimidazol-1-yl}-N-(trans-4-hydroxycyclohexyl)acetamide" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C29 H35 F2 N3 O3" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2017-05-19 
_chem_comp.pdbx_modified_date                    2017-06-30 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        511.603 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     9MY 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        5Q18 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
9MY N1  N1  N 0 1 Y N N 12.880 24.401 3.878 1.256  0.116  0.183  N1  9MY 1  
9MY N3  N2  N 0 1 Y N N 12.822 25.968 2.242 2.984  -0.898 -0.681 N3  9MY 2  
9MY C4  C1  C 0 1 Y N N 11.562 24.906 3.834 1.776  0.963  -0.777 C4  9MY 3  
9MY C5  C2  C 0 1 Y N N 11.566 25.871 2.829 2.886  0.295  -1.322 C5  9MY 4  
9MY C6  C3  C 0 1 N N N 12.475 22.072 4.592 -1.126 0.580  0.156  C6  9MY 5  
9MY C7  C4  C 0 1 N N S 13.412 23.316 4.757 0.087  0.374  1.027  C7  9MY 6  
9MY C8  C5  C 0 1 Y N N 10.427 24.614 4.582 1.427  2.223  -1.243 C8  9MY 7  
9MY C10 C6  C 0 1 Y N N 10.399 26.576 2.541 3.634  0.910  -2.330 C10 9MY 8  
9MY C13 C7  C 0 1 Y N N 9.277  26.285 3.279 3.273  2.161  -2.783 C13 9MY 9  
9MY C15 C8  C 0 1 Y N N 16.024 25.212 3.590 1.227  -3.329 0.301  C15 9MY 10 
9MY C17 C9  C 0 1 N N N 11.692 20.403 2.930 -3.540 0.592  -0.173 C17 9MY 11 
9MY C21 C10 C 0 1 N N N 10.115 18.846 0.944 -6.286 -0.197 -0.823 C21 9MY 12 
9MY C22 C11 C 0 1 N N N 12.384 19.663 1.793 -4.732 1.104  0.638  C22 9MY 13 
9MY C24 C12 C 0 1 N N N 11.558 18.458 1.291 -5.964 1.191  -0.265 C24 9MY 14 
9MY C28 C13 C 0 1 Y N N 17.048 24.322 3.936 -0.141 -3.520 0.272  C28 9MY 15 
9MY C31 C14 C 0 1 N N N 15.109 23.051 0.899 2.954  -3.190 2.954  C31 9MY 16 
9MY O20 O1  O 0 1 N N N 15.079 23.385 2.284 3.063  -2.596 1.659  O20 9MY 17 
9MY C9  C15 C 0 1 N N R 15.013 24.840 2.539 1.812  -2.191 1.098  C9  9MY 18 
9MY C2  C16 C 0 1 Y N N 13.567 25.089 2.877 2.028  -1.005 0.194  C2  9MY 19 
9MY F19 F1  F 0 1 N N N 8.126  26.951 3.029 3.996  2.755  -3.757 F19 9MY 20 
9MY C12 C17 C 0 1 Y N N 9.288  25.331 4.275 2.172  2.817  -2.242 C12 9MY 21 
9MY F18 F2  F 0 1 N N N 8.150  25.095 4.960 1.830  4.042  -2.696 F18 9MY 22 
9MY C16 C18 C 0 1 N N N 13.884 23.718 6.197 0.331  1.630  1.866  C16 9MY 23 
9MY C29 C19 C 0 1 N N N 13.290 25.029 6.705 -0.831 1.824  2.842  C29 9MY 24 
9MY C35 C20 C 0 1 N N N 13.964 25.479 8.013 -0.587 3.080  3.682  C35 9MY 25 
9MY C37 C21 C 0 1 N N N 13.843 24.415 9.110 0.718  2.924  4.466  C37 9MY 26 
9MY C34 C22 C 0 1 N N N 14.347 23.005 8.622 1.880  2.729  3.490  C34 9MY 27 
9MY C30 C23 C 0 1 N N N 13.726 22.606 7.239 1.635  1.473  2.650  C30 9MY 28 
9MY O14 O2  O 0 1 N N N 11.798 21.631 5.515 -0.991 0.810  -1.027 O14 9MY 29 
9MY N11 N3  N 0 1 N N N 12.476 21.553 3.351 -2.360 0.509  0.692  N11 9MY 30 
9MY O26 O3  O 0 1 N N N 9.334  17.656 0.690 -7.437 -0.117 -1.666 O26 9MY 31 
9MY C25 C24 C 0 1 N N N 9.457  19.642 2.085 -5.094 -0.710 -1.634 C25 9MY 32 
9MY C23 C25 C 0 1 N N N 10.311 20.840 2.500 -3.862 -0.796 -0.731 C23 9MY 33 
9MY C27 C26 C 0 1 Y N N 15.968 26.445 4.233 2.060  -4.185 -0.396 C27 9MY 34 
9MY C33 C27 C 0 1 Y N N 16.907 26.780 5.199 1.524  -5.232 -1.122 C33 9MY 35 
9MY C36 C28 C 0 1 Y N N 17.913 25.892 5.536 0.155  -5.424 -1.151 C36 9MY 36 
9MY C32 C29 C 0 1 Y N N 17.985 24.664 4.905 -0.678 -4.567 -0.454 C32 9MY 37 
9MY H1  H1  H 0 1 N N N 14.343 23.002 4.262 -0.080 -0.477 1.686  H1  9MY 38 
9MY H2  H2  H 0 1 N N N 10.436 23.866 5.361 0.574  2.737  -0.826 H2  9MY 39 
9MY H3  H3  H 0 1 N N N 10.377 27.326 1.764 4.491  0.408  -2.752 H3  9MY 40 
9MY H4  H4  H 0 1 N N N 11.587 19.710 3.777 -3.340 1.277  -0.997 H4  9MY 41 
9MY H5  H5  H 0 1 N N N 10.131 19.478 0.044 -6.486 -0.882 0.001  H5  9MY 42 
9MY H6  H6  H 0 1 N N N 13.359 19.300 2.149 -4.932 0.419  1.462  H6  9MY 43 
9MY H7  H7  H 0 1 N N N 12.536 20.361 0.957 -4.503 2.093  1.036  H7  9MY 44 
9MY H8  H8  H 0 1 N N N 11.538 17.690 2.078 -5.764 1.876  -1.088 H8  9MY 45 
9MY H9  H9  H 0 1 N N N 12.040 18.049 0.391 -6.813 1.556  0.313  H9  9MY 46 
9MY H10 H10 H 0 1 N N N 17.111 23.362 3.446 -0.792 -2.852 0.817  H10 9MY 47 
9MY H11 H11 H 0 1 N N N 15.158 21.958 0.786 3.945  -3.470 3.310  H11 9MY 48 
9MY H12 H12 H 0 1 N N N 14.199 23.430 0.411 2.507  -2.475 3.645  H12 9MY 49 
9MY H13 H13 H 0 1 N N N 15.993 23.508 0.431 2.325  -4.079 2.894  H13 9MY 50 
9MY H14 H14 H 0 1 N N N 15.255 25.378 1.611 1.126  -1.918 1.899  H14 9MY 51 
9MY H15 H15 H 0 1 N N N 14.966 23.894 6.110 0.403  2.497  1.210  H15 9MY 52 
9MY H16 H16 H 0 1 N N N 13.434 25.807 5.941 -1.760 1.936  2.284  H16 9MY 53 
9MY H17 H17 H 0 1 N N N 12.214 24.888 6.886 -0.903 0.957  3.499  H17 9MY 54 
9MY H18 H18 H 0 1 N N N 15.030 25.669 7.817 -0.514 3.947  3.026  H18 9MY 55 
9MY H19 H19 H 0 1 N N N 13.484 26.405 8.361 -1.414 3.219  4.377  H19 9MY 56 
9MY H20 H20 H 0 1 N N N 14.445 24.727 9.976 0.892  3.818  5.064  H20 9MY 57 
9MY H21 H21 H 0 1 N N N 12.788 24.331 9.409 0.645  2.056  5.122  H21 9MY 58 
9MY H22 H22 H 0 1 N N N 14.065 22.249 9.369 1.952  3.596  2.833  H22 9MY 59 
9MY H23 H23 H 0 1 N N N 15.442 23.034 8.525 2.809  2.618  4.048  H23 9MY 60 
9MY H24 H24 H 0 1 N N N 12.655 22.398 7.377 1.563  0.606  3.306  H24 9MY 61 
9MY H25 H25 H 0 1 N N N 14.230 21.700 6.871 2.463  1.335  1.955  H25 9MY 62 
9MY H26 H26 H 0 1 N N N 13.059 21.991 2.667 -2.468 0.403  1.650  H26 9MY 63 
9MY H27 H27 H 0 1 N N N 8.442  17.902 0.476 -7.699 -0.962 -2.055 H27 9MY 64 
9MY H28 H28 H 0 1 N N N 8.474  20.004 1.748 -5.323 -1.699 -2.031 H28 9MY 65 
9MY H29 H29 H 0 1 N N N 9.326  18.979 2.953 -4.893 -0.024 -2.457 H29 9MY 66 
9MY H30 H30 H 0 1 N N N 10.402 21.529 1.647 -3.013 -1.161 -1.309 H30 9MY 67 
9MY H31 H31 H 0 1 N N N 9.821  21.357 3.338 -4.062 -1.481 0.093  H31 9MY 68 
9MY H32 H32 H 0 1 N N N 15.188 27.147 3.978 3.129  -4.035 -0.373 H32 9MY 69 
9MY H33 H33 H 0 1 N N N 16.852 27.740 5.691 2.174  -5.900 -1.667 H33 9MY 70 
9MY H34 H34 H 0 1 N N N 18.640 26.157 6.290 -0.264 -6.241 -1.718 H34 9MY 71 
9MY H35 H35 H 0 1 N N N 18.770 23.969 5.165 -1.747 -4.717 -0.476 H35 9MY 72 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
9MY O26 C21 SING N N 1  
9MY C31 O20 SING N N 2  
9MY C21 C24 SING N N 3  
9MY C21 C25 SING N N 4  
9MY C24 C22 SING N N 5  
9MY C22 C17 SING N N 6  
9MY C25 C23 SING N N 7  
9MY N3  C5  SING Y N 8  
9MY N3  C2  DOUB Y N 9  
9MY O20 C9  SING N N 10 
9MY C23 C17 SING N N 11 
9MY C9  C2  SING N N 12 
9MY C9  C15 SING N N 13 
9MY C10 C5  DOUB Y N 14 
9MY C10 C13 SING Y N 15 
9MY C5  C4  SING Y N 16 
9MY C2  N1  SING Y N 17 
9MY C17 N11 SING N N 18 
9MY F19 C13 SING N N 19 
9MY C13 C12 DOUB Y N 20 
9MY N11 C6  SING N N 21 
9MY C15 C28 DOUB Y N 22 
9MY C15 C27 SING Y N 23 
9MY C4  N1  SING Y N 24 
9MY C4  C8  DOUB Y N 25 
9MY N1  C7  SING N N 26 
9MY C28 C32 SING Y N 27 
9MY C27 C33 DOUB Y N 28 
9MY C12 C8  SING Y N 29 
9MY C12 F18 SING N N 30 
9MY C6  C7  SING N N 31 
9MY C6  O14 DOUB N N 32 
9MY C7  C16 SING N N 33 
9MY C32 C36 DOUB Y N 34 
9MY C33 C36 SING Y N 35 
9MY C16 C29 SING N N 36 
9MY C16 C30 SING N N 37 
9MY C29 C35 SING N N 38 
9MY C30 C34 SING N N 39 
9MY C35 C37 SING N N 40 
9MY C34 C37 SING N N 41 
9MY C7  H1  SING N N 42 
9MY C8  H2  SING N N 43 
9MY C10 H3  SING N N 44 
9MY C17 H4  SING N N 45 
9MY C21 H5  SING N N 46 
9MY C22 H6  SING N N 47 
9MY C22 H7  SING N N 48 
9MY C24 H8  SING N N 49 
9MY C24 H9  SING N N 50 
9MY C28 H10 SING N N 51 
9MY C31 H11 SING N N 52 
9MY C31 H12 SING N N 53 
9MY C31 H13 SING N N 54 
9MY C9  H14 SING N N 55 
9MY C16 H15 SING N N 56 
9MY C29 H16 SING N N 57 
9MY C29 H17 SING N N 58 
9MY C35 H18 SING N N 59 
9MY C35 H19 SING N N 60 
9MY C37 H20 SING N N 61 
9MY C37 H21 SING N N 62 
9MY C34 H22 SING N N 63 
9MY C34 H23 SING N N 64 
9MY C30 H24 SING N N 65 
9MY C30 H25 SING N N 66 
9MY N11 H26 SING N N 67 
9MY O26 H27 SING N N 68 
9MY C25 H28 SING N N 69 
9MY C25 H29 SING N N 70 
9MY C23 H30 SING N N 71 
9MY C23 H31 SING N N 72 
9MY C27 H32 SING N N 73 
9MY C33 H33 SING N N 74 
9MY C36 H34 SING N N 75 
9MY C32 H35 SING N N 76 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
9MY SMILES           ACDLabs              12.01 "n3(C(C(=O)NC1CCC(CC1)O)C2CCCCC2)c5cc(c(cc5nc3C(c4ccccc4)OC)F)F" 
9MY InChI            InChI                1.03  
"InChI=1S/C29H35F2N3O3/c1-37-27(19-10-6-3-7-11-19)28-33-24-16-22(30)23(31)17-25(24)34(28)26(18-8-4-2-5-9-18)29(36)32-20-12-14-21(35)15-13-20/h3,6-7,10-11,16-18,20-21,26-27,35H,2,4-5,8-9,12-15H2,1H3,(H,32,36)/t20-,21-,26-,27+/m0/s1" 
9MY InChIKey         InChI                1.03  JJRPVOCGGUAZIT-LKSLQULUSA-N 
9MY SMILES_CANONICAL CACTVS               3.385 "CO[C@H](c1ccccc1)c2nc3cc(F)c(F)cc3n2[C@@H](C4CCCCC4)C(=O)N[C@@H]5CC[C@@H](O)CC5" 
9MY SMILES           CACTVS               3.385 "CO[CH](c1ccccc1)c2nc3cc(F)c(F)cc3n2[CH](C4CCCCC4)C(=O)N[CH]5CC[CH](O)CC5" 
9MY SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "CO[C@H](c1ccccc1)c2nc3cc(c(cc3n2[C@@H](C4CCCCC4)C(=O)NC5CCC(CC5)O)F)F" 
9MY SMILES           "OpenEye OEToolkits" 2.0.6 "COC(c1ccccc1)c2nc3cc(c(cc3n2C(C4CCCCC4)C(=O)NC5CCC(CC5)O)F)F" 
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
9MY "SYSTEMATIC NAME" ACDLabs              12.01 "(2S)-2-cyclohexyl-2-{5,6-difluoro-2-[(R)-methoxy(phenyl)methyl]-1H-benzimidazol-1-yl}-N-(trans-4-hydroxycyclohexyl)acetamide"        
9MY "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 "(2~{S})-2-[5,6-bis(fluoranyl)-2-[(~{R})-methoxy(phenyl)methyl]benzimidazol-1-yl]-2-cyclohexyl-~{N}-(4-oxidanylcyclohexyl)ethanamide" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
9MY "Create component" 2017-05-19 RCSB 
9MY "Initial release"  2017-07-05 RCSB 
# 
