data_ADY
# 
_chem_comp.id                                    ADY 
_chem_comp.name                                  "3'-OXO-ADENOSINE" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C10 H11 N5 O4" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2002-02-13 
_chem_comp.pdbx_modified_date                    2011-06-04 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        265.225 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     ADY 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        ? 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        1KY5 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
ADY "O5'"  O5*  O 0 1 N N N 10.988 24.993 49.429 -4.447 2.195  -0.634 "O5'"  ADY 1  
ADY "C5'"  C5*  C 0 1 N N N 12.316 25.162 48.953 -4.154 1.080  0.210  "C5'"  ADY 2  
ADY "C4'"  C4*  C 0 1 N N R 12.673 23.770 48.476 -3.164 0.151  -0.496 "C4'"  ADY 3  
ADY "O4'"  O4*  O 0 1 N N N 11.864 23.368 47.329 -1.898 0.814  -0.649 "O4'"  ADY 4  
ADY "C3'"  C3*  C 0 1 N N N 14.032 23.280 48.140 -2.935 -1.092 0.342  "C3'"  ADY 5  
ADY "O3'"  O3*  O 0 1 N N N 14.964 23.333 48.969 -3.760 -1.893 0.712  "O3'"  ADY 6  
ADY "C2'"  C2*  C 0 1 N N S 13.983 22.554 46.813 -1.434 -1.111 0.613  "C2'"  ADY 7  
ADY "O2'"  O2*  O 0 1 N Y N 14.930 21.497 46.968 -0.916 -2.440 0.512  "O2'"  ADY 8  
ADY "C1'"  C1*  C 0 1 N N R 12.500 22.167 46.930 -0.883 -0.207 -0.518 "C1'"  ADY 9  
ADY N9     N9   N 0 1 Y N N 11.896 21.554 45.710 0.399  0.385  -0.130 N9     ADY 10 
ADY C8     C8   C 0 1 Y N N 11.978 22.019 44.376 0.580  1.596  0.471  C8     ADY 11 
ADY N7     N7   N 0 1 Y N N 11.347 21.275 43.489 1.848  1.806  0.673  N7     ADY 12 
ADY C5     C5   C 0 1 Y N N 10.803 20.246 44.265 2.559  0.745  0.222  C5     ADY 13 
ADY C6     C6   C 0 1 Y N N 9.998  19.083 43.953 3.926  0.423  0.166  C6     ADY 14 
ADY N6     N6   N 0 1 N N N 9.601  18.776 42.725 4.880  1.294  0.663  N6     ADY 15 
ADY N1     N1   N 0 1 Y N N 9.636  18.270 44.986 4.281  -0.740 -0.370 N1     ADY 16 
ADY C2     C2   C 0 1 Y N N 10.030 18.562 46.250 3.378  -1.577 -0.846 C2     ADY 17 
ADY N3     N3   N 0 1 Y N N 10.779 19.603 46.674 2.088  -1.315 -0.821 N3     ADY 18 
ADY C4     C4   C 0 1 Y N N 11.134 20.408 45.632 1.639  -0.177 -0.305 C4     ADY 19 
ADY "HO5'" *HO5 H 0 0 N N N 10.764 25.866 49.728 -5.072 2.754  -0.153 "HO5'" ADY 20 
ADY "H5'1" 1H5* H 0 0 N N N 12.441 25.965 48.190 -5.073 0.535  0.426  "H5'1" ADY 21 
ADY "H5'2" 2H5* H 0 0 N N N 13.026 25.600 49.691 -3.715 1.436  1.143  "H5'2" ADY 22 
ADY "H4'"  H4*  H 0 1 N N N 12.491 23.318 49.479 -3.555 -0.129 -1.474 "H4'"  ADY 23 
ADY "H2'"  H2*  H 0 1 N N N 14.231 23.026 45.834 -1.211 -0.684 1.591  "H2'"  ADY 24 
ADY "HO2'" *HO2 H 0 0 N N N 14.899 21.041 46.135 -1.364 -2.966 1.188  "HO2'" ADY 25 
ADY "H1'"  H1*  H 0 1 N N N 12.366 21.339 47.664 -0.781 -0.769 -1.446 "H1'"  ADY 26 
ADY H8     H8   H 0 1 N N N 12.511 22.924 44.041 -0.212 2.279  0.739  H8     ADY 27 
ADY HN61   1HN6 H 0 0 N N N 9.034  17.957 42.505 5.820  1.059  0.623  HN61   ADY 28 
ADY HN62   2HN6 H 0 0 N N N 10.435 18.732 42.139 4.608  2.142  1.048  HN62   ADY 29 
ADY H2     H2   H 0 1 N N N 9.698  17.861 47.035 3.710  -2.512 -1.273 H2     ADY 30 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
ADY "O5'" "C5'"  SING N N 1  
ADY "O5'" "HO5'" SING N N 2  
ADY "C5'" "C4'"  SING N N 3  
ADY "C5'" "H5'1" SING N N 4  
ADY "C5'" "H5'2" SING N N 5  
ADY "C4'" "O4'"  SING N N 6  
ADY "C4'" "C3'"  SING N N 7  
ADY "C4'" "H4'"  SING N N 8  
ADY "O4'" "C1'"  SING N N 9  
ADY "C3'" "O3'"  DOUB N N 10 
ADY "C3'" "C2'"  SING N N 11 
ADY "C2'" "O2'"  SING N N 12 
ADY "C2'" "C1'"  SING N N 13 
ADY "C2'" "H2'"  SING N N 14 
ADY "O2'" "HO2'" SING N N 15 
ADY "C1'" N9     SING N N 16 
ADY "C1'" "H1'"  SING N N 17 
ADY N9    C8     SING Y N 18 
ADY N9    C4     SING Y N 19 
ADY C8    N7     DOUB Y N 20 
ADY C8    H8     SING N N 21 
ADY N7    C5     SING Y N 22 
ADY C5    C6     SING Y N 23 
ADY C5    C4     DOUB Y N 24 
ADY C6    N6     SING N N 25 
ADY C6    N1     DOUB Y N 26 
ADY N6    HN61   SING N N 27 
ADY N6    HN62   SING N N 28 
ADY N1    C2     SING Y N 29 
ADY C2    N3     DOUB Y N 30 
ADY C2    H2     SING N N 31 
ADY N3    C4     SING Y N 32 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
ADY SMILES           ACDLabs              10.04 "O=C3C(OC(n2cnc1c(ncnc12)N)C3O)CO"                                                                                                
ADY SMILES_CANONICAL CACTVS               3.341 "Nc1ncnc2n(cnc12)[C@@H]3O[C@H](CO)C(=O)[C@H]3O"                                                                                   
ADY SMILES           CACTVS               3.341 "Nc1ncnc2n(cnc12)[CH]3O[CH](CO)C(=O)[CH]3O"                                                                                       
ADY SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "c1nc(c2c(n1)n(cn2)[C@H]3[C@@H](C(=O)[C@H](O3)CO)O)N"                                                                             
ADY SMILES           "OpenEye OEToolkits" 1.5.0 "c1nc(c2c(n1)n(cn2)C3C(C(=O)C(O3)CO)O)N"                                                                                          
ADY InChI            InChI                1.03  "InChI=1S/C10H11N5O4/c11-8-5-9(13-2-12-8)15(3-14-5)10-7(18)6(17)4(1-16)19-10/h2-4,7,10,16,18H,1H2,(H2,11,12,13)/t4-,7-,10-/m1/s1" 
ADY InChIKey         InChI                1.03  MIAZJCOESMXYNJ-XMRAEQSQSA-N                                                                                                       
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
ADY "SYSTEMATIC NAME" ACDLabs              10.04 9-beta-D-erythro-pentofuranosyl-3-ulose-9H-purin-6-amine                   
ADY "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "(2R,4S,5R)-5-(6-aminopurin-9-yl)-4-hydroxy-2-(hydroxymethyl)oxolan-3-one" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
ADY "Create component"  2002-02-13 RCSB 
ADY "Modify descriptor" 2011-06-04 RCSB 
# 
