data_IRY
# 
_chem_comp.id                                    IRY 
_chem_comp.name                                  "[(2~{S})-2,3-bis(oxidanyl)propyl] 8-hexylselanyloctanoate" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C17 H34 O4 Se" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-08-03 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        381.409 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     IRY 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8Q2O 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
IRY SE1 SE1 SE 0 0 N N N N N N -0.988 -18.383 32.542 -4.423  -0.747 0.108  SE1 IRY 1  
IRY C1  C1  C  0 1 N N N N N N 1.827  -20.197 20.500 10.752  -0.488 -0.164 C1  IRY 2  
IRY C10 C2  C  0 1 N N N N N N -0.165 -20.384 30.674 -1.583  -0.412 0.036  C10 IRY 3  
IRY C11 C3  C  0 1 N N N N N N -1.450 -19.706 31.184 -2.861  0.421  -0.085 C11 IRY 4  
IRY C12 C4  C  0 1 N N N N N N -2.549 -17.916 33.592 -5.883  0.546  -0.084 C12 IRY 5  
IRY C13 C5  C  0 1 N N N N N N -2.431 -16.513 34.174 -7.226  -0.178 0.038  C13 IRY 6  
IRY C14 C6  C  0 1 N N N N N N -3.700 -16.113 34.924 -8.365  0.832  -0.112 C14 IRY 7  
IRY C15 C7  C  0 1 N N N N N N -4.987 -16.169 34.090 -9.707  0.108  0.011  C15 IRY 8  
IRY C16 C8  C  0 1 N N N N N N -6.115 -15.344 34.720 -10.847 1.117  -0.139 C16 IRY 9  
IRY C17 C9  C  0 1 N N N N N N -7.238 -14.982 33.748 -12.189 0.394  -0.017 C17 IRY 10 
IRY C2  C10 C  0 1 N N N N N N 1.164  -21.562 20.328 9.524   0.425  -0.171 C2  IRY 11 
IRY C3  C11 C  0 1 N N N N N N -0.093 -21.678 21.180 8.257   -0.423 -0.030 C3  IRY 12 
IRY C4  C12 C  0 1 N N N N N N 0.483  -21.828 23.406 5.889   -0.163 -0.054 C4  IRY 13 
IRY C5  C13 C  0 1 N N N N N N 0.205  -22.201 24.852 4.630   0.657  -0.174 C5  IRY 14 
IRY C6  C14 C  0 1 N N N N N N 0.603  -20.974 25.687 3.411   -0.255 -0.023 C6  IRY 15 
IRY C7  C15 C  0 1 N N N N N N 0.739  -21.199 27.189 2.133   0.578  -0.144 C7  IRY 16 
IRY C8  C16 C  0 1 N N N N N N -0.102 -20.228 28.038 0.914   -0.333 0.007  C8  IRY 17 
IRY C9  C17 C  0 1 N N N N N N 0.483  -19.801 29.397 -0.364  0.500  -0.115 C9  IRY 18 
IRY O1  O1  O  0 1 N N N N N N 0.988  -19.256 19.918 11.925  0.290  -0.412 O1  IRY 19 
IRY O2  O2  O  0 1 N N N N N N 0.771  -21.630 18.990 9.606   1.343  0.921  O2  IRY 20 
IRY O3  O3  O  0 1 N N N N N N 0.030  -22.545 22.283 7.089   0.430  -0.155 O3  IRY 21 
IRY O4  O4  O  0 1 N N N N N N 1.114  -20.839 23.252 5.817   -1.355 0.133  O4  IRY 22 
IRY H1  H1  H  0 1 N N N N N N 2.807  -20.188 20.000 10.837  -0.975 0.808  H1  IRY 23 
IRY H2  H2  H  0 1 N N N N N N 1.959  -19.974 21.569 10.646  -1.245 -0.941 H2  IRY 24 
IRY H3  H3  H  0 1 N N N N N N -0.405 -21.438 30.471 -1.557  -0.896 1.013  H3  IRY 25 
IRY H4  H4  H  0 1 N N N N N N 0.582  -20.326 31.480 -1.569  -1.171 -0.746 H4  IRY 26 
IRY H5  H5  H  0 1 N N N N N N -1.960 -19.209 30.346 -2.888  0.905  -1.061 H5  IRY 27 
IRY H6  H6  H  0 1 N N N N N N -2.116 -20.464 31.622 -2.876  1.180  0.697  H6  IRY 28 
IRY H7  H7  H  0 1 N N N N N N -3.440 -17.962 32.948 -5.805  1.301  0.698  H7  IRY 29 
IRY H8  H8  H  0 1 N N N N N N -2.654 -18.637 34.416 -5.817  1.026  -1.060 H8  IRY 30 
IRY H9  H9  H  0 1 N N N N N N -1.580 -16.485 34.870 -7.304  -0.933 -0.744 H9  IRY 31 
IRY H10 H10 H  0 1 N N N N N N -2.259 -15.799 33.355 -7.292  -0.658 1.015  H10 IRY 32 
IRY H11 H11 H  0 1 N N N N N N -3.572 -15.082 35.287 -8.287  1.587  0.671  H11 IRY 33 
IRY H12 H12 H  0 1 N N N N N N -3.819 -16.792 35.782 -8.299  1.312  -1.088 H12 IRY 34 
IRY H13 H13 H  0 1 N N N N N N -5.314 -17.216 34.011 -9.786  -0.647 -0.771 H13 IRY 35 
IRY H14 H14 H  0 1 N N N N N N -4.777 -15.774 33.085 -9.774  -0.372 0.987  H14 IRY 36 
IRY H15 H15 H  0 1 N N N N N N -5.684 -14.412 35.113 -10.769 1.873  0.643  H15 IRY 37 
IRY H16 H16 H  0 1 N N N N N N -6.548 -15.925 35.548 -10.781 1.598  -1.116 H16 IRY 38 
IRY H17 H17 H  0 1 N N N N N N -8.004 -14.394 34.274 -12.268 -0.362 -0.799 H17 IRY 39 
IRY H18 H18 H  0 1 N N N N N N -6.827 -14.389 32.917 -12.255 -0.087 0.959  H18 IRY 40 
IRY H19 H19 H  0 1 N N N N N N -7.691 -15.903 33.352 -13.001 1.113  -0.124 H19 IRY 41 
IRY H20 H20 H  0 1 N N N N N N 1.873  -22.361 20.590 9.488   0.978  -1.109 H20 IRY 42 
IRY H21 H21 H  0 1 N N N N N N -0.347 -20.676 21.556 8.239   -1.181 -0.812 H21 IRY 43 
IRY H22 H22 H  0 1 N N N N N N -0.909 -22.047 20.541 8.251   -0.907 0.947  H22 IRY 44 
IRY H23 H23 H  0 1 N N N N N N -0.862 -22.428 24.990 4.615   1.416  0.609  H23 IRY 45 
IRY H24 H24 H  0 1 N N N N N N 0.807  -23.074 25.144 4.603   1.141  -1.150 H24 IRY 46 
IRY H25 H25 H  0 1 N N N N N N 1.572  -20.613 25.312 3.425   -1.014 -0.805 H25 IRY 47 
IRY H26 H26 H  0 1 N N N N N N -0.162 -20.199 25.531 3.438   -0.739 0.953  H26 IRY 48 
IRY H27 H27 H  0 1 N N N N N N 0.419  -22.226 27.417 2.118   1.337  0.638  H27 IRY 49 
IRY H28 H28 H  0 1 N N N N N N 1.797  -21.075 27.465 2.106   1.062  -1.120 H28 IRY 50 
IRY H29 H29 H  0 1 N N N N N N -0.258 -19.316 27.443 0.928   -1.092 -0.776 H29 IRY 51 
IRY H30 H30 H  0 1 N N N N N N -1.072 -20.710 28.231 0.940   -0.817 0.983  H30 IRY 52 
IRY H31 H31 H  0 1 N N N N N N 1.544  -20.093 29.404 -0.391  0.984  -1.091 H31 IRY 53 
IRY H32 H32 H  0 1 N N N N N N 0.404  -18.706 29.459 -0.379  1.258  0.668  H32 IRY 54 
IRY H33 H33 H  0 1 N N N N N N 1.371  -18.391 20.007 12.743  -0.225 -0.422 H33 IRY 55 
IRY H34 H34 H  0 1 N N N N N N 0.349  -22.465 18.825 9.642   0.919  1.789  H34 IRY 56 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
IRY O2  C2  SING N N 1  
IRY O1  C1  SING N N 2  
IRY C2  C1  SING N N 3  
IRY C2  C3  SING N N 4  
IRY C3  O3  SING N N 5  
IRY O3  C4  SING N N 6  
IRY O4  C4  DOUB N N 7  
IRY C4  C5  SING N N 8  
IRY C5  C6  SING N N 9  
IRY C6  C7  SING N N 10 
IRY C7  C8  SING N N 11 
IRY C8  C9  SING N N 12 
IRY C9  C10 SING N N 13 
IRY C10 C11 SING N N 14 
IRY C11 SE1 SING N N 15 
IRY SE1 C12 SING N N 16 
IRY C12 C13 SING N N 17 
IRY C17 C16 SING N N 18 
IRY C15 C16 SING N N 19 
IRY C15 C14 SING N N 20 
IRY C13 C14 SING N N 21 
IRY C1  H1  SING N N 22 
IRY C1  H2  SING N N 23 
IRY C10 H3  SING N N 24 
IRY C10 H4  SING N N 25 
IRY C11 H5  SING N N 26 
IRY C11 H6  SING N N 27 
IRY C12 H7  SING N N 28 
IRY C12 H8  SING N N 29 
IRY C13 H9  SING N N 30 
IRY C13 H10 SING N N 31 
IRY C14 H11 SING N N 32 
IRY C14 H12 SING N N 33 
IRY C15 H13 SING N N 34 
IRY C15 H14 SING N N 35 
IRY C16 H15 SING N N 36 
IRY C16 H16 SING N N 37 
IRY C17 H17 SING N N 38 
IRY C17 H18 SING N N 39 
IRY C17 H19 SING N N 40 
IRY C2  H20 SING N N 41 
IRY C3  H21 SING N N 42 
IRY C3  H22 SING N N 43 
IRY C5  H23 SING N N 44 
IRY C5  H24 SING N N 45 
IRY C6  H25 SING N N 46 
IRY C6  H26 SING N N 47 
IRY C7  H27 SING N N 48 
IRY C7  H28 SING N N 49 
IRY C8  H29 SING N N 50 
IRY C8  H30 SING N N 51 
IRY C9  H31 SING N N 52 
IRY C9  H32 SING N N 53 
IRY O1  H33 SING N N 54 
IRY O2  H34 SING N N 55 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
IRY InChI            InChI                1.06  "InChI=1S/C17H34O4Se/c1-2-3-4-9-12-22-13-10-7-5-6-8-11-17(20)21-15-16(19)14-18/h16,18-19H,2-15H2,1H3/t16-/m0/s1" 
IRY InChIKey         InChI                1.06  NDMGORYXSUYATF-INIZCTEOSA-N                                                                                      
IRY SMILES_CANONICAL CACTVS               3.385 "CCCCCC[Se]CCCCCCCC(=O)OC[C@@H](O)CO"                                                                            
IRY SMILES           CACTVS               3.385 "CCCCCC[Se]CCCCCCCC(=O)OC[CH](O)CO"                                                                              
IRY SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CCCCCC[Se]CCCCCCCC(=O)OC[C@H](CO)O"                                                                             
IRY SMILES           "OpenEye OEToolkits" 2.0.7 "CCCCCC[Se]CCCCCCCC(=O)OCC(CO)O"                                                                                 
# 
_pdbx_chem_comp_identifier.comp_id           IRY 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "[(2~{S})-2,3-bis(oxidanyl)propyl] 8-hexylselanyloctanoate" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
IRY "Create component" 2023-08-04 PDBE 
IRY "Initial release"  2024-05-15 RCSB 
IRY "Modify PCM"       2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            IRY 
_pdbx_chem_comp_pcm.modified_residue_id                CYS 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           Lipid/lipid-like 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               SE1 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   SG 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
