data_JDY
#

_chem_comp.id                                   JDY
_chem_comp.name                                 "(3S,3aR,5R,7aS,8S)-hexahydro-4H-3,5-methanofuro[2,3-b]pyran-8-yl [(2S,3R)-4-[{[2-(cyclopropylamino)-1,3-benzothiazol-6-yl]sulfonyl}(2-methylpropyl)amino]-1-(3-fluorophenyl)-3-hydroxybutan-2-yl]carbamate"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C33 H41 F N4 O7 S2"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2018-09-05
_chem_comp.pdbx_modified_date                   2019-04-19
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       688.830
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    JDY
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       6MCR
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
JDY  CAA  C1   C  0  1  N  N  R   -6.888  -17.626  21.259    8.535   1.231   0.393  CAA  JDY   1  
JDY  CAC  C2   C  0  1  N  N  N   -6.294  -18.192  19.025    7.338  -0.056   1.872  CAC  JDY   2  
JDY  CAD  C3   C  0  1  N  N  S   -6.177  -16.709  19.134    7.577  -0.941   0.580  CAD  JDY   3  
JDY  CAE  C4   C  0  1  N  N  R   -6.090  -16.482  20.712    8.772  -0.216  -0.111  CAE  JDY   4  
JDY  CAF  C5   C  0  1  N  N  S   -7.394  -15.871  18.614    6.393  -0.779  -0.390  CAF  JDY   5  
JDY  CAG  C6   C  0  1  N  N  R   -8.043  -15.563  19.920    6.939  -0.031  -1.639  CAG  JDY   6  
JDY  CAH  C7   C  0  1  N  N  N   -6.846  -15.243  20.846    8.466  -0.319  -1.614  CAH  JDY   7  
JDY  CAJ  C8   C  0  1  N  N  N   -8.865  -16.756  20.418    6.825   1.463  -1.359  CAJ  JDY   8  
JDY  CAL  C9   C  0  1  N  N  N   -8.439  -16.213  16.433    4.079  -0.248  -0.141  CAL  JDY   9  
JDY  CAO  C10  C  0  1  N  N  S   -8.717  -17.305  14.146    1.682   0.168  -0.008  CAO  JDY  10  
JDY  CAP  C11  C  0  1  N  N  N  -10.313  -17.304  12.134   -0.590   1.160  -0.318  CAP  JDY  11  
JDY  CAS  C12  C  0  1  Y  N  N   -9.601  -15.421   9.469   -3.894   1.828   0.772  CAS  JDY  12  
JDY  CAT  C13  C  0  1  N  N  R  -10.182  -17.627  13.641    0.818   1.409   0.225  CAT  JDY  13  
JDY  CAW  C14  C  0  1  N  N  N   -7.670  -18.350  13.680    1.131  -0.999   0.815  CAW  JDY  14  
JDY  CAX  C15  C  0  1  Y  N  N  -10.171  -14.390   8.821   -4.040   0.479   1.010  CAX  JDY  15  
JDY  CAY  C16  C  0  1  Y  N  N  -10.548  -14.584   7.584   -5.252  -0.153   0.742  CAY  JDY  16  
JDY  CAZ  C17  C  0  1  Y  N  N  -10.347  -15.749   6.920   -6.330   0.574   0.229  CAZ  JDY  17  
JDY  CBA  C18  C  0  1  Y  N  N   -9.755  -16.744   7.504   -6.157   1.954  -0.007  CBA  JDY  18  
JDY  CBB  C19  C  0  1  Y  N  N   -9.340  -16.600   8.814   -4.958   2.562   0.269  CBB  JDY  19  
JDY  CBD  C20  C  0  1  Y  N  N  -11.398  -14.584   5.371   -7.350  -1.440   0.314  CBD  JDY  20  
JDY  CBG  C21  C  0  1  N  N  N  -12.742  -13.173   3.809   -9.671  -1.905  -0.371  CBG  JDY  21  
JDY  CBH  C22  C  0  1  Y  N  N   -6.431  -18.034  14.148    1.905  -2.251   0.493  CBH  JDY  22  
JDY  CBI  C23  C  0  1  Y  N  N   -5.836  -18.845  15.090    3.035  -2.572   1.222  CBI  JDY  23  
JDY  CBJ  C24  C  0  1  Y  N  N   -4.606  -18.546  15.649    3.747  -3.720   0.927  CBJ  JDY  24  
JDY  CBK  C25  C  0  1  Y  N  N   -3.900  -17.454  15.208    3.329  -4.548  -0.098  CBK  JDY  25  
JDY  CBL  C26  C  0  1  Y  N  N   -4.446  -16.656  14.224    2.197  -4.228  -0.828  CBL  JDY  26  
JDY  CBM  C27  C  0  1  Y  N  N   -5.721  -16.930  13.692    1.482  -3.081  -0.528  CBM  JDY  27  
JDY  CBN  C28  C  0  1  N  N  N  -13.994  -12.842   4.624  -10.906  -2.726   0.004  CBN  JDY  28  
JDY  CBO  C29  C  0  1  N  N  N  -14.151  -13.484   3.303  -10.346  -2.793  -1.418  CBO  JDY  29  
JDY  CBR  C30  C  0  1  N  N  N  -11.568  -15.366  11.813   -1.310   3.406  -1.253  CBR  JDY  30  
JDY  CBS  C31  C  0  1  N  N  N  -12.295  -14.982  13.128   -1.863   2.832  -2.559  CBS  JDY  31  
JDY  CBT  C32  C  0  1  N  N  N  -13.579  -14.411  12.599   -3.355   2.537  -2.395  CBT  JDY  32  
JDY  CBU  C33  C  0  1  N  N  N  -11.583  -13.886  13.881   -1.665   3.848  -3.686  CBU  JDY  33  
JDY  FBP  F1   F  0  1  N  N  N   -3.733  -15.702  13.873    1.788  -5.037  -1.830  FBP  JDY  34  
JDY  NAN  N1   N  0  1  N  N  N   -8.630  -17.265  15.594    3.060   0.447   0.402  NAN  JDY  35  
JDY  NAQ  N2   N  0  1  N  N  N  -10.286  -15.887  12.042   -1.382   2.387  -0.203  NAQ  JDY  36  
JDY  NBE  N3   N  0  1  Y  N  N  -10.853  -15.737   5.712   -7.424  -0.186   0.022  NBE  JDY  37  
JDY  NBF  N4   N  0  1  N  N  N  -11.919  -14.353   4.155   -8.379  -2.346   0.159  NBF  JDY  38  
JDY  OAB  O1   O  0  1  N  N  N   -7.020  -18.622  20.160    8.320   1.001   1.824  OAB  JDY  39  
JDY  OAI  O2   O  0  1  N  N  N   -8.237  -17.341  21.561    7.264   1.729  -0.038  OAI  JDY  40  
JDY  OAK  O3   O  0  1  N  N  N   -8.313  -16.548  17.787    5.346   0.009   0.237  OAK  JDY  41  
JDY  OAM  O4   O  0  1  N  N  N   -8.301  -15.109  16.102    3.855  -1.107  -0.970  OAM  JDY  42  
JDY  OAU  O5   O  0  1  N  N  N   -7.867  -16.075  11.232   -2.631   4.016   1.167  OAU  JDY  43  
JDY  OAV  O6   O  0  1  N  N  N   -8.922  -13.940  11.422   -1.765   1.904   2.187  OAV  JDY  44  
JDY  OBQ  O7   O  0  1  N  N  N  -10.552  -18.941  13.759    0.747   1.684   1.625  OBQ  JDY  45  
JDY  SAR  S1   S  0  1  N  N  N   -9.094  -15.243  11.047   -2.359   2.622   1.113  SAR  JDY  46  
JDY  SBC  S2   S  0  1  Y  N  N  -11.296  -13.515   6.550   -5.752  -1.831   0.932  SBC  JDY  47  
JDY  HAA  H1   H  0  1  N  N  N   -6.369  -18.074  22.119    9.361   1.908   0.173  HAA  JDY  48  
JDY  HAD  H2   H  0  1  N  N  N   -6.831  -18.464  18.105    6.333   0.364   1.854  HAD  JDY  49  
JDY  HAC  H3   H  0  1  N  N  N   -5.295  -18.652  19.016    7.474  -0.661   2.768  HAC  JDY  50  
JDY  HAE  H4   H  0  1  N  N  N   -5.250  -16.353  18.661    7.794  -1.982   0.819  HAE  JDY  51  
JDY  HAF  H5   H  0  1  N  N  N   -5.054  -16.437  21.078    9.747  -0.616   0.169  HAF  JDY  52  
JDY  HAG  H6   H  0  1  N  N  N   -7.026  -14.948  18.141    6.006  -1.758  -0.671  HAG  JDY  53  
JDY  HAH  H7   H  0  1  N  N  N   -8.688  -14.677  19.829    6.449  -0.332  -2.565  HAH  JDY  54  
JDY  HAI  H8   H  0  1  N  N  N   -6.274  -14.374  20.489    9.015   0.435  -2.178  HAI  JDY  55  
JDY  HAJ  H9   H  0  1  N  N  N   -7.167  -15.070  21.884    8.681  -1.319  -1.989  HAJ  JDY  56  
JDY  HAK  H10  H  0  1  N  N  N   -9.874  -16.414  20.692    7.461   2.016  -2.050  HAK  JDY  57  
JDY  HAL  H11  H  0  1  N  N  N   -8.937  -17.507  19.618    5.789   1.781  -1.478  HAL  JDY  58  
JDY  HAO  H12  H  0  1  N  N  N   -8.429  -16.326  13.736    1.664  -0.094  -1.066  HAO  JDY  59  
JDY  HAQ  H13  H  0  1  N  N  N  -11.262  -17.696  11.739   -0.529   0.863  -1.365  HAQ  JDY  60  
JDY  HAP  H14  H  0  1  N  N  N   -9.473  -17.741  11.573   -1.066   0.365   0.257  HAP  JDY  61  
JDY  HAT  H15  H  0  1  N  N  N  -10.877  -16.978  14.193    1.261   2.261  -0.290  HAT  JDY  62  
JDY  HAX  H16  H  0  1  N  N  N   -7.957  -19.342  14.059    1.231  -0.773   1.877  HAX  JDY  63  
JDY  HAW  H17  H  0  1  N  N  N   -7.646  -18.371  12.580    0.079  -1.149   0.573  HAW  JDY  64  
JDY  HAY  H18  H  0  1  N  N  N  -10.313  -13.435   9.305   -3.213  -0.090   1.407  HAY  JDY  65  
JDY  HBA  H19  H  0  1  N  N  N   -9.589  -17.671   6.975   -6.975   2.537  -0.403  HBA  JDY  66  
JDY  HBB  H20  H  0  1  N  N  N   -8.818  -17.402   9.315   -4.839   3.619   0.084  HBB  JDY  67  
JDY  HBG  H21  H  0  1  N  N  N  -12.230  -12.323   3.335   -9.795  -0.826  -0.470  HBG  JDY  68  
JDY  HBI  H22  H  0  1  N  N  N   -6.347  -19.744  15.402    3.363  -1.925   2.022  HBI  JDY  69  
JDY  HBJ  H23  H  0  1  N  N  N   -4.202  -19.171  16.431    4.629  -3.969   1.497  HBJ  JDY  70  
JDY  HBK  H24  H  0  1  N  N  N   -2.931  -17.223  15.626    3.885  -5.445  -0.329  HBK  JDY  71  
JDY  HBM  H25  H  0  1  N  N  N   -6.144  -16.286  12.935    0.597  -2.832  -1.094  HBM  JDY  72  
JDY  HBO  H26  H  0  1  N  N  N  -14.296  -11.793   4.762  -10.758  -3.594   0.645  HBO  JDY  73  
JDY  HBN  H27  H  0  1  N  N  N  -14.217  -13.411   5.539  -11.843  -2.187   0.151  HBN  JDY  74  
JDY  HBQ  H28  H  0  1  N  N  N  -14.569  -12.910   2.463  -10.914  -2.299  -2.207  HBQ  JDY  75  
JDY  HBP  H29  H  0  1  N  N  N  -14.491  -14.528   3.240   -9.829  -3.706  -1.713  HBP  JDY  76  
JDY  HBR  H30  H  0  1  N  N  N  -11.477  -14.468  11.185   -0.272   3.705  -1.398  HBR  JDY  77  
JDY  HBS  H31  H  0  1  N  N  N  -12.168  -16.123  11.286   -1.900   4.274  -0.959  HBS  JDY  78  
JDY  HBT  H32  H  0  1  N  N  N  -12.468  -15.866  13.759   -1.335   1.911  -2.804  HBT  JDY  79  
JDY  HBV  H33  H  0  1  N  N  N  -14.211  -14.088  13.439   -3.490   1.743  -1.661  HBV  JDY  80  
JDY  HBW  H34  H  0  1  N  N  N  -13.358  -13.548  11.954   -3.868   3.437  -2.056  HBW  JDY  81  
JDY  HBU  H35  H  0  1  N  N  N  -14.109  -15.179  12.015   -3.770   2.221  -3.352  HBU  JDY  82  
JDY  HBY  H36  H  0  1  N  N  N  -12.138  -13.653  14.802   -0.602   4.059  -3.803  HBY  JDY  83  
JDY  HBZ  H37  H  0  1  N  N  N  -10.567  -14.219  14.140   -2.059   3.440  -4.617  HBZ  JDY  84  
JDY  HBX  H38  H  0  1  N  N  N  -11.524  -12.987  13.251   -2.193   4.770  -3.442  HBX  JDY  85  
JDY  HAN  H39  H  0  1  N  N  N   -8.726  -18.152  16.046    3.239   1.133   1.064  HAN  JDY  86  
JDY  HBF  H40  H  0  1  N  N  N  -12.489  -15.149   3.951   -8.246  -3.276   0.401  HBF  JDY  87  
JDY  HB0  H41  H  0  1  N  N  N  -10.494  -19.206  14.669    0.363   0.966   2.148  HB0  JDY  88  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
JDY  CBO  CBG  SING  N  N   1  
JDY  CBO  CBN  SING  N  N   2  
JDY  CBG  NBF  SING  N  N   3  
JDY  CBG  CBN  SING  N  N   4  
JDY  NBF  CBD  SING  N  N   5  
JDY  CBD  NBE  DOUB  Y  N   6  
JDY  CBD  SBC  SING  Y  N   7  
JDY  NBE  CAZ  SING  Y  N   8  
JDY  SBC  CAY  SING  Y  N   9  
JDY  CAZ  CBA  DOUB  Y  N  10  
JDY  CAZ  CAY  SING  Y  N  11  
JDY  CBA  CBB  SING  Y  N  12  
JDY  CAY  CAX  DOUB  Y  N  13  
JDY  CBB  CAS  DOUB  Y  N  14  
JDY  CAX  CAS  SING  Y  N  15  
JDY  CAS  SAR  SING  N  N  16  
JDY  SAR  OAU  DOUB  N  N  17  
JDY  SAR  OAV  DOUB  N  N  18  
JDY  SAR  NAQ  SING  N  N  19  
JDY  CBR  NAQ  SING  N  N  20  
JDY  CBR  CBS  SING  N  N  21  
JDY  NAQ  CAP  SING  N  N  22  
JDY  CAP  CAT  SING  N  N  23  
JDY  CBT  CBS  SING  N  N  24  
JDY  CBS  CBU  SING  N  N  25  
JDY  CAT  OBQ  SING  N  N  26  
JDY  CAT  CAO  SING  N  N  27  
JDY  CAW  CAO  SING  N  N  28  
JDY  CAW  CBH  SING  N  N  29  
JDY  CBM  CBH  DOUB  Y  N  30  
JDY  CBM  CBL  SING  Y  N  31  
JDY  FBP  CBL  SING  N  N  32  
JDY  CAO  NAN  SING  N  N  33  
JDY  CBH  CBI  SING  Y  N  34  
JDY  CBL  CBK  DOUB  Y  N  35  
JDY  CBI  CBJ  DOUB  Y  N  36  
JDY  CBK  CBJ  SING  Y  N  37  
JDY  NAN  CAL  SING  N  N  38  
JDY  OAM  CAL  DOUB  N  N  39  
JDY  CAL  OAK  SING  N  N  40  
JDY  OAK  CAF  SING  N  N  41  
JDY  CAF  CAD  SING  N  N  42  
JDY  CAF  CAG  SING  N  N  43  
JDY  CAC  CAD  SING  N  N  44  
JDY  CAC  OAB  SING  N  N  45  
JDY  CAD  CAE  SING  N  N  46  
JDY  CAG  CAJ  SING  N  N  47  
JDY  CAG  CAH  SING  N  N  48  
JDY  OAB  CAA  SING  N  N  49  
JDY  CAJ  OAI  SING  N  N  50  
JDY  CAE  CAH  SING  N  N  51  
JDY  CAE  CAA  SING  N  N  52  
JDY  CAA  OAI  SING  N  N  53  
JDY  CAA  HAA  SING  N  N  54  
JDY  CAC  HAD  SING  N  N  55  
JDY  CAC  HAC  SING  N  N  56  
JDY  CAD  HAE  SING  N  N  57  
JDY  CAE  HAF  SING  N  N  58  
JDY  CAF  HAG  SING  N  N  59  
JDY  CAG  HAH  SING  N  N  60  
JDY  CAH  HAI  SING  N  N  61  
JDY  CAH  HAJ  SING  N  N  62  
JDY  CAJ  HAK  SING  N  N  63  
JDY  CAJ  HAL  SING  N  N  64  
JDY  CAO  HAO  SING  N  N  65  
JDY  CAP  HAQ  SING  N  N  66  
JDY  CAP  HAP  SING  N  N  67  
JDY  CAT  HAT  SING  N  N  68  
JDY  CAW  HAX  SING  N  N  69  
JDY  CAW  HAW  SING  N  N  70  
JDY  CAX  HAY  SING  N  N  71  
JDY  CBA  HBA  SING  N  N  72  
JDY  CBB  HBB  SING  N  N  73  
JDY  CBG  HBG  SING  N  N  74  
JDY  CBI  HBI  SING  N  N  75  
JDY  CBJ  HBJ  SING  N  N  76  
JDY  CBK  HBK  SING  N  N  77  
JDY  CBM  HBM  SING  N  N  78  
JDY  CBN  HBO  SING  N  N  79  
JDY  CBN  HBN  SING  N  N  80  
JDY  CBO  HBQ  SING  N  N  81  
JDY  CBO  HBP  SING  N  N  82  
JDY  CBR  HBR  SING  N  N  83  
JDY  CBR  HBS  SING  N  N  84  
JDY  CBS  HBT  SING  N  N  85  
JDY  CBT  HBV  SING  N  N  86  
JDY  CBT  HBW  SING  N  N  87  
JDY  CBT  HBU  SING  N  N  88  
JDY  CBU  HBY  SING  N  N  89  
JDY  CBU  HBZ  SING  N  N  90  
JDY  CBU  HBX  SING  N  N  91  
JDY  NAN  HAN  SING  N  N  92  
JDY  NBF  HBF  SING  N  N  93  
JDY  OBQ  HB0  SING  N  N  94  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
JDY  SMILES            ACDLabs               12.01  "C21OCC3C(C(CO1)C2C3)OC(NC(C(CN(CC(C)C)S(c4cc5c(cc4)nc(s5)NC6CC6)(=O)=O)O)Cc7cccc(c7)F)=O"  
JDY  InChI             InChI                 1.03   "InChI=1S/C33H41FN4O7S2/c1-18(2)14-38(47(41,42)23-8-9-26-29(13-23)46-32(36-26)35-22-6-7-22)15-28(39)27(11-19-4-3-5-21(34)10-19)37-33(40)45-30-20-12-24-25(30)17-44-31(24)43-16-20/h3-5,8-10,13,18,20,22,24-25,27-28,30-31,39H,6-7,11-12,14-17H2,1-2H3,(H,35,36)(H,37,40)/t20-,24-,25-,27+,28-,30+,31+/m1/s1"  
JDY  InChIKey          InChI                 1.03   JQZKWUOMGKUWLH-LZEUUTFHSA-N  
JDY  SMILES_CANONICAL  CACTVS                3.385  "CC(C)CN(C[C@@H](O)[C@H](Cc1cccc(F)c1)NC(=O)O[C@H]2[C@H]3CO[C@H]4OC[C@@H]2[C@H]4C3)[S](=O)(=O)c5ccc6nc(NC7CC7)sc6c5"  
JDY  SMILES            CACTVS                3.385  "CC(C)CN(C[CH](O)[CH](Cc1cccc(F)c1)NC(=O)O[CH]2[CH]3CO[CH]4OC[CH]2[CH]4C3)[S](=O)(=O)c5ccc6nc(NC7CC7)sc6c5"  
JDY  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.6  "CC(C)CN(C[C@H]([C@H](Cc1cccc(c1)F)NC(=O)O[C@H]2[C@@H]3C[C@@H]4[C@H]2CO[C@@H]4OC3)O)S(=O)(=O)c5ccc6c(c5)sc(n6)NC7CC7"  
JDY  SMILES            "OpenEye OEToolkits"  2.0.6  "CC(C)CN(CC(C(Cc1cccc(c1)F)NC(=O)OC2C3CC4C2COC4OC3)O)S(=O)(=O)c5ccc6c(c5)sc(n6)NC7CC7"  
#
_pdbx_chem_comp_identifier.comp_id          JDY
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          ACDLabs
_pdbx_chem_comp_identifier.program_version  12.01
_pdbx_chem_comp_identifier.identifier       "(3S,3aR,5R,7aS,8S)-hexahydro-4H-3,5-methanofuro[2,3-b]pyran-8-yl [(2S,3R)-4-[{[2-(cyclopropylamino)-1,3-benzothiazol-6-yl]sulfonyl}(2-methylpropyl)amino]-1-(3-fluorophenyl)-3-hydroxybutan-2-yl]carbamate"
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
JDY  "Create component"  2018-09-05  RCSB  
JDY  "Initial release"   2019-04-24  RCSB  
##
